Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Solanum_20lycopersicum_20[refseq_20GCF_5F000188115.3_202014-10-16] 3,145 sequences; 823,786,402 total letters Query= NC_016656.1 Length=45890 Score E Sequences producing significant alignments: (Bits) Value seq3145 499 9e-137 seq2 260 4e-65 seq5 172 2e-38 seq1 149 2e-31 seq11 111 5e-20 seq3 98.7 3e-16 seq12 96.9 1e-15 >seq3145 Length=155461 Score = 499 bits (552), Expect = 9e-137 Identities = 707/986 (72%), Gaps = 6/986 (1%) Strand=Plus/Minus Query 25802 TTTTGTGAGTGGGTTACAAGTACTGAGAACCGTCTCTATGTGGGATGGTTCGGGGTGCTT 25861 || ||| | ||| | || || ||||| |||||||| || | |||||||| || || | Sbjct 1550 TTCTGTAACTGGATAACTAGCACTGAAAACCGTCTTTACATTGGATGGTTTGGTGTTTTG 1491 Query 25862 ATGATACCCTGCTTACTCGCAGCCACTACATGT-TTTATACTTGCCTTCATCGCAGCACC 25920 ||||| || |||| | | || ||| | ||| ||||| |||||||||| || || || Sbjct 1490 ATGATCCCTACCTTATTGACGGCAACTTC-TGTATTTATTATTGCCTTCATTGCTGCTCC 1432 Query 25921 GCCTGTAGATATAGATGGCATACGTGAGCCAGTTTCCGGCTCGTTAATGTACGGAAACAA 25980 || ||||| || ||||| || ||||| || ||||| || || || | ||||||||||| Sbjct 1431 TCCAGTAGACATTGATGGTATTCGTGAACCTGTTTCAGGGTCTCTACTTTACGGAAACAA 1372 Query 25981 TATAATATCAGGAGCAGTCGTCCCCTCCTCTAACGCAATCGGACTACATTTTTACCCGAT 26040 || || || || || | | || | ||| || || || ||||||||||||| || Sbjct 1371 CATTATTTCCGGTGCCATTATTCCTACTTCTGCAGCTATAGGTTTACATTTTTACCCAAT 1312 Query 26041 CTGGGAAGCTGGCACAC-TGGACGAGTGGCTATACAATGGCGGACCATATCAACTCATTA 26099 ||||||||| |||| | | || || ||| ||||||| || || || ||| |||| ||| Sbjct 1311 CTGGGAAGC-GGCATCCGTTGATGAATGGTTATACAACGGTGGTCCTTATGAACTAATTG 1253 Query 26100 TCTTCCACTTCTTAATAGGAGTAGCAGCATATGCAGGGAGACAGTGGGAACT-ATCTTAC 26158 | | ||||||||| | || ||||| || || | ||||||| || | ||| | Sbjct 1252 TTCTACACTTCTTACTTGGCGTAGCTTGTTACATGGGTCGTGAGTGGGAGCTTAGCTTCC 1193 Query 26159 AGACTAGGAATGAGACCATGGATATTTGTTGCATATACAGCACCACTATCCGCAGCTCTC 26218 | || || ||| |||| ||||| |||||||||| |||| || | | || ||| | Sbjct 1192 -GTCTGGGTATGCGACCTTGGATTGCTGTTGCATATTCAGCTCCTGTTGCAGCTGCTACC 1134 Query 26219 GCAGTGTTCTTAGTTTATCCTTTCGGACAAGGGAGTTTTAGTGATGGAATGCCTCTTGGT 26278 ||||| ||||| | || || |||| ||||| |||||| |||||| |||||||| || Sbjct 1133 GCAGTTTTCTTGATCTACCCAATCGGTCAAGGAAGTTTTTCTGATGGTATGCCTCTAGGA 1074 Query 26279 ATCTCTGGTACTTTTAACTTTATGTTCGTATTCCAAGCAGAACATAATATACTCATGCAC 26338 |||||||||||||| || || ||| | |||||||| || ||||| || || || |||||| Sbjct 1073 ATCTCTGGTACTTTCAATTTCATGATTGTATTCCAGGCTGAACACAACATCCTTATGCAC 1014 Query 26339 CCATTCCATATGGCTGGTGTTGCTGGGGTTTTCGGTGGAGCTCTTTTCGCTGCTATGCAC 26398 ||||| || ||| || || |||||||| ||||| || | || ||| ||||||||| Sbjct 1013 CCATTTCACATGTTAGGCGTAGCTGGGGTATTCGGCGGCTCCCTATTCAGTGCTATGCAT 954 Query 26399 GGAAGTTTGGTTACTTCCTCACTTATTGCAGAAACGACAGAGGAAGTCTCACAGAATTAT 26458 || ||||| ||||| | || ||||| ||||| | | || ||| | Sbjct 953 GGTTCCTTGGTAACTTCTAGTTTGATCAGGGAAACCACAGAAAATGAATCTGCTAATGAA 894 Query 26459 GGCTATAAGTTTGGGCAAGATGAAGAGACATATAATATTGTCGCTGCACACGGGTACTTT 26518 || || | || || ||||| ||||| || |||||||| || || || || || || ||| Sbjct 893 GGTTACAGATTCGGTCAAGAGGAAGAAACTTATAATATCGTAGCCGCTCATGGTTATTTT 834 Query 26519 GGGAGATTAATTTTTCAGTATGCGAGTTTTAATAACAGCCGTTCTCTTCATTTCTTTCTT 26578 || |||| || || || ||||| ||||| || ||| ||||| | || ||||| || Sbjct 833 GGCCGATTGATCTTCCAATATGCTAGTTTCAACAACTCTCGTTCGTTACACTTCTTCCTA 774 Query 26579 GCTACTTGGCCGGTTGTTGGCATATGGCTGACATCTATGGGTATCTGCACAATGGCATTT 26638 ||| ||||||| || || || || ||| | || || | |||||| |||| ||||| || Sbjct 773 GCTGCTTGGCCTGTAGTAGGTATCTGGTTTACCGCTTTAGGTATCAGCACTATGGCTTTC 714 Query 26639 AACCTAAATGGTTTTAACTTTAACCAGTCAGTAGTAGATGTTAATGGAAAGATAATACCT 26698 |||||||||||||| || || ||||| || ||||| || | | || |||| Sbjct 713 AACCTAAATGGTTTCAATTTCAACCAATCTGTAGTTGACAGTCAGGGTCGTGTAATTAAC 654 Query 26699 ACATGGGCTGATGTATTAAACCGAGCTAACCTCGGCTTTGAAGTTATGCACGAGCGTAAT 26758 || ||||||||| | | ||||| |||||||| || | ||||||||||| || |||||| Sbjct 653 ACTTGGGCTGATATCATCAACCGTGCTAACCTTGGTATGGAAGTTATGCATGAACGTAAT 594 Query 26759 GCTCATAACTTTCCACTTGACTTAGC 26784 ||||||||||| || || ||| |||| Sbjct 593 GCTCATAACTTCCCTCTAGACCTAGC 568 >seq2 Length=55340444 Score = 260 bits (288), Expect = 4e-65 Identities = 640/960 (67%), Gaps = 8/960 (1%) Strand=Plus/Minus Query 25829 AACCGTCTCTATGTGGGATGGTTCGGGGTGCTTATGATACCCTGCTTACTCGCAGCCACT 25888 ||| |||| || | ||| ||| ||||| | ||||| | |||| | | || ||| Sbjct 13824720 AACTGTCTTTACATTTGATTGTTTGGGGTTTTCATGATCCATACCTTATTGACGGCAACT 13824661 Query 25889 ACATGT-TTTATACTTGCCTTCATCGCAGCACCGCCTGTAGATATAGATGGCATACGTGA 25947 | ||| ||||| |||||||||| | || || | ||| || ||||| || ||||| Sbjct 13824660 TC-TGTATTTATTATTGCCTTCATTGATGCTTGTCCAGCAGACATTGATGGTATTCGTGA 13824602 Query 25948 GCCAGTTTCCGGCTCGTTAATGTACGGAAACAATATAATATCAGGAGCAGTCGTCCCCTC 26007 || |||| | | || | |||| |||||| || || || || || | | || | Sbjct 13824601 ACCTTTTTCAAGGTTTCTACTTTACGAAAACAACATTATTTCCGGTGCGATTATTCCTAC 13824542 Query 26008 CTCTAACGCAATCGGACTACATTTTTACCCGATCTGGGAAGCTGGCACAC-TGGACGAGT 26066 ||| || || || ||||||||||||| || | ||| || |||| | | | || | Sbjct 13824541 TTCTGCAGCTATAGGTTTACATTTTTACCCAATTTAGGATGC-GGCATCCATTTATGAAT 13824483 Query 26067 GGCTATACAATGGCGGACCATATCAACTCATTATCTTCCACTTCTTAATAGGAGTAGCAG 26126 || ||||||| | || ||| |||| ||| | | |||||||| | || ||| | Sbjct 13824482 GGTTATACAACGATGGTTATTATGAACTAATTTTTCTACACTTCTTTCTTGGCGTATCCT 13824423 Query 26127 CATATGCAGGGAGACAGTGGGAACT-ATCTTACAGACTAGGAATGAGACCATGGATATTT 26185 || || | | ||||| || | ||| | | ||||| |||||||| ||||| || Sbjct 13824422 GTTACAAGGGTCGTGATTGGGAGCTTAGCTTCC-GTCTAGGTATGAGACCTTGGATTGTT 13824364 Query 26186 GTTGCATATACAGCACCACTATCCGCAGCTCTCGCAGTGTTCTTAGTTTATCCTTTCGGA 26245 ||||||||| ||| || | | ||| | || | ||| | | || || |||| Sbjct 13824363 GTTGCATATTAAGCTCCTGTTAGATCTGCTACCACAATTTTCCTTATCTACCCAATCGGT 13824304 Query 26246 CAAGGGAGTTTTAGTGATGGAATGCCTCTTGGTATCTCTGGTACTTTTAACTTTATGTTC 26305 |||| | ||| |||||| |||||||| || |||||| | ||||| || || ||| | Sbjct 13824303 CAAGCAAACTTTTCTGATGGTATGCCTCTAGGAATCTCTTGCACTTTCAATTTCATGATT 13824244 Query 26306 GTATTCCAAGCAGAACATAATATACTCATGCACCCATTCCATATGGCTGGTGTTGCTGGG 26365 |||||||| || ||| | || || || ||||||||||| || ||| || || ||| || Sbjct 13824243 GTATTCCAGGCCGAATACAACATCCTTATGCACCCATTTCACATGTTAGGCGTAGCTAGG 13824184 Query 26366 GTTTTCGGTGGAGCTCTTTTCGCTGCTATGCACGGAAGTTTGGTTACTTCCTCACTTATT 26425 || |||| || | || || ||| | | | || | || || ||||| | || Sbjct 13824183 GTATTCGACGGCTCACTATTTAGTGCCACGTATGGTAACTTTGTAACTTCTAGTTTGATC 13824124 Query 26426 GCAGAAACGACAGAGGAAGTCTCACAGAATTATGGCTATAAGTTTGGGCAAGATGAAGAG 26485 ||||| | ||| | | || ||| | | || | || | ||||| ||||| Sbjct 13824123 AGGGAAACCATAGAAAATGAATCTGCCAATAAATGTTAAAGATTCAGTCAAGAGGAAGAA 13824064 Query 26486 ACATATAATATTGTCGCTGCACACGGGTACTTTGGGAGATTAATTTTTCAGTATGCGAGT 26545 || ||||||||||| | || || || | ||||| ||| || ||||| ||||| ||| Sbjct 13824063 ACTTATAATATTGTAGACGCTCATGGTTGTTTTGGCCTATTGATCTTTCAATATGCTAGT 13824004 Query 26546 TTTAATAACAGCCGTTCTCTTCATTTCTTTCTTGCTACTTGGCCGGTTGTTGGCATATGG 26605 || || || ||||| | || ||||| | || || |||| || | || || ||| Sbjct 13824003 TTCAACAAATCTCGTTCGTTACACTTCTTCTTAGCCGCTAGGCCTGTATTAGGTATCTGG 13823944 Query 26606 CTGACATCTATGGGTATCTGCACAATGGCATTTAACCTAAATGGTTTTAACTTTAACCAG 26665 | || || | |||||| |||| ||||| || ||||||||| |||| || || ||||| Sbjct 13823943 TTTACCGCTTTAGGTATCAGCACTATGGCTTTCAACCTAAATTGTTTCAATTTCAACCAA 13823884 Query 26666 TCAGTAGTAGAT-GTTAATGGAAAGATAATACCTACATGGGCTGATGTATTAAACCGAGC 26724 || ||| | ||| || | || | |||| || ||||||||| | | ||||| || Sbjct 13823883 TCTGTACTTGATAGTCAGTGTCGTG-TAATCAACACTTGGGCTGATATCATCAACCGTGC 13823825 Query 26725 TAACCTCGGCTTTGAAGTTATGCACGAGCGTAATGCTCATAACTTTCCACTTGACTTAGC 26784 |||||| | | |||||||||| || || |||||| ||||||| || || ||| |||| Sbjct 13823824 TAACCTTAGTATGAAAGTTATGCATGAACGGAATGCTAATAACTTCCCTCTAGACCTAGC 13823765 Score = 100 bits (110), Expect = 8e-17 Identities = 124/170 (73%), Gaps = 0/170 (0%) Strand=Plus/Minus Query 26582 ACTTGGCCGGTTGTTGGCATATGGCTGACATCTATGGGTATCTGCACAATGGCATTTAAC 26641 |||||||| || || || || ||| | || || | |||||| |||| ||||| || ||| Sbjct 22405091 ACTTGGCCTGTAGTAGGTATCTGGTTTACCGCTTTAGGTATCAGCACTATGGCTTTCAAC 22405032 Query 26642 CTAAATGGTTTTAACTTTAACCAGTCAGTAGTAGATGTTAATGGAAAGATAATACCTACA 26701 ||||||||||| || || ||||| || ||||| || | | || |||| || Sbjct 22405031 CTAAATGGTTTCAATTTCAACCAATCTGTAGTTGACAGTCAGGGTCGTGTAATTAACACT 22404972 Query 26702 TGGGCTGATGTATTAAACCGAGCTAACCTCGGCTTTGAAGTTATGCACGA 26751 ||||||||| | | ||||| |||||||| || | ||||||||||| || Sbjct 22404971 TGGGCTGATATCATCAACCGTGCTAACCTTGGTATGGAAGTTATGCAAGA 22404922 >seq5 Length=65875088 Score = 172 bits (190), Expect = 2e-38 Identities = 294/415 (71%), Gaps = 10/415 (2%) Strand=Plus/Minus Query 25820 AGTACTGAGAACCGTCTCTATGTGGGATGGTTCGGGGTGCTTATGATACCCTGCTTACTC 25879 || ||||| ||| |||| || | |||||||| || || | ||||| || |||| | Sbjct 14606546 AGCACTGAAAACTGTCTTTACATTGGATGGTTTGGTGTTTTGATGATCCCTACCTTATTG 14606487 Query 25880 GCAGCCACTACATGT-TTTATACTTGCCTTCATCGCAGCACCGCCTGTAGATATAGATGG 25938 | || ||| | ||| ||||| |||||||||| || || || || ||||| || ||||| Sbjct 14606486 ACGGCAACTTC-TGTATTTATTATTGCCTTCATTGCTGCTCCTCCAGTAGACATTGATGG 14606428 Query 25939 CATACGTGAGCCAGTTTCCGGCTCGTTAATGTACGGAAACAATATAATATCAGGAGCAGT 25998 || ||||| || ||||| || || || | ||||||||||| || || || || || | Sbjct 14606427 TATTCGTGAACCTGTTTCAGGGTCTCTACTTTACGGAAACAACATTATTTCCGGTGCCAT 14606368 Query 25999 CGTCCCCTCCTCTAACGCAATCGGACTACATTTTTACCCGATCTGGGAAGCTGGCA-CAC 26057 | || | ||| || || || ||||||||||||| || |||||||| |||| || Sbjct 14606367 TATTCCTACTTCTGCAGCTATAGGTTTACATTTTTACCCAATGTGGGAAGC-GGCATCAG 14606309 Query 26058 TGGACGAGTGGCTATACAATGGCGGACCATATCAACTCATTATCTTCCACTTCTTAATAG 26117 | || || ||| ||||||| || || || ||| |||| ||| | | ||||| ||| | | Sbjct 14606308 TTGATGAATGGTTATACAACGGTGGTCCTTATGAACTAATTGTTCTACACTTATTACTTG 14606249 Query 26118 GAGTAGCAGCATATGCA-GGGAGA-CAGTGGGAAC-TATCTTACAGACTAGGAATGAGAC 26174 | ||||| || || ||| | ||||||| | || ||| | | || || ||| ||| Sbjct 14606248 GCGTAGCTTGTTA--CATGGGTCATGAGTGGGAGCTTAGCTT-CTGTCTGGGTATGCGAC 14606192 Query 26175 CATGGATATTTGTTGCATATACAGCACCACTATCCGCAGCTCTCGCAGTGTTCTT 26229 | ||||| |||||||||| |||| || | | || ||| |||||| ||||| Sbjct 14606191 CTTGGATTGCTGTTGCATATTCAGCTCCTGTTGCAGCTGCTACCGCAGTTTTCTT 14606137 >seq1 Length=98543444 Score = 149 bits (164), Expect = 2e-31 Identities = 176/236 (75%), Gaps = 2/236 (1%) Strand=Plus/Plus Query 26142 AGTGGGAACT-ATCTTACAGACTAGGAATGAGACCATGGATATTTGTTGCATATACAGCA 26200 ||||||| || | ||| | | || || ||| |||| ||||| |||||||||| |||| Sbjct 45009466 AGTGGGAGCTTAGCTTCC-GTCTTGGTATGCGACCTTGGATTGCTGTTGCATATTCAGCT 45009524 Query 26201 CCACTATCCGCAGCTCTCGCAGTGTTCTTAGTTTATCCTTTCGGACAAGGGAGTTTTAGT 26260 || | | || ||| |||||| ||||| | | || |||| ||||| |||||| | Sbjct 45009525 CCTGTTGCAGCTGCTACCGCAGTTTTCTTGATCCACCCAATCGGTCAAGGAAGTTTTTAT 45009584 Query 26261 GATGGAATGCCTCTTGGTATCTCTGGTACTTTTAACTTTATGTTCGTATTCCAAGCAGAA 26320 ||||| |||||||| || |||||| |||||| || || ||| | |||||||| || ||| Sbjct 45009585 GATGGTATGCCTCTAGGAATCTCTAGTACTTCCAATTTCATGATTGTATTCCAGGCTGAA 45009644 Query 26321 CATAATATACTCATGCACCCATTCCATATGGCTGGTGTTGCTGGGGTTTTCGGTGG 26376 || || || || ||||||||||| || ||| || || |||||||| ||||| || Sbjct 45009645 CACAAGATCCTTATGCACCCATTTCACATGTTAGGCGTAGCTGGGGTATTCGGCGG 45009700 Score = 95.1 bits (104), Expect = 4e-15 Identities = 131/180 (73%), Gaps = 4/180 (2%) Strand=Plus/Plus Query 26579 GCTACTTGGCCGGTTGTTGGCATAT--GGCTGACATCTATGGGTATCTGCACAATGGCAT 26636 ||| ||||||| || || || |||| || | || || | |||||| |||| ||||| | Sbjct 88349226 GCTGCTTGGCCTGTAGTAGGTATATCTGGTTTACCGCTTTAGGTATCAGCACTATGGCTT 88349285 Query 26637 TTAACCTAAATGGTTTTAACTTTAACCAGTCAGTAGTAGAT-GTTAATGGAAAGATAATA 26695 | ||||| |||||||| || || ||||| || ||||| ||| || | || | | | || Sbjct 88349286 TCAACCTGAATGGTTTCAATTTCAACCAATCTGTAGTTGATAGTCAGTGTCATGTAATTA 88349345 Query 26696 CCTACATGGGCTGATGTATTAAACCGAGCTAACCTCGGCTTTGAAGTTATGCACGAGCGT 26755 | || ||||| ||| | | ||||| |||| ||| || | ||||||||||| || ||| Sbjct 88349346 AC-ACTTGGGCCGATATCATCAACCGTGCTAGCCTTGGTATGGAAGTTATGCATGAACGT 88349404 >seq11 Length=56302525 Score = 111 bits (122), Expect = 5e-20 Identities = 117/154 (76%), Gaps = 0/154 (0%) Strand=Plus/Plus Query 26241 TCGGACAAGGGAGTTTTAGTGATGGAATGCCTCTTGGTATCTCTGGTACTTTTAACTTTA 26300 |||| ||||| |||||| | |||| |||||||| || ||||||||||||| || || | Sbjct 7156278 TCGGTCAAGGAAGTTTTTCTAATGGTATGCCTCTAGGAGTCTCTGGTACTTTCAATTTCA 7156337 Query 26301 TGTTCGTATTCCAAGCAGAACATAATATACTCATGCACCCATTCCATATGGCTGGTGTTG 26360 || | |||||||| || ||||| || || || |||||| |||| |||||| || || | Sbjct 7156338 TGATTGTATTCCAGGCTGAACACAACATCCTTATGCACTCATTTCATATGTTAGGCGTAG 7156397 Query 26361 CTGGGGTTTTCGGTGGAGCTCTTTTCGCTGCTAT 26394 || |||| || || || | || ||| |||||| Sbjct 7156398 CTAGGGTATTTGGCGGCTCCCTATTCAGTGCTAT 7156431 >seq3 Length=70787664 Score = 98.7 bits (108), Expect = 3e-16 Identities = 121/164 (74%), Gaps = 1/164 (1%) Strand=Plus/Minus Query 26618 GGTATCTGCACAATGGCATTTAACCTAAATGGTTTTAACTTTAACCAGTCAGTAGTAGAT 26677 |||||| |||| ||||| || |||||||||||||| || || ||||| || |||| || Sbjct 48907275 GGTATCAGCACTATGGCTTTCAACCTAAATGGTTTCAATTTCAACCAATCTATAGTTGAC 48907216 Query 26678 GTTAATGGAAAGATAA-TACCTACATGGGCTGATGTATTAAACCGAGCTAACCTCGGCTT 26736 | | || ||| | || ||||||||| | | ||||| |||||||| || | Sbjct 48907215 AGTCAGGGTCGTGTAAATTAAAACTTGGGCTGATATCATCAACCGTGCTAACCTTGGTAT 48907156 Query 26737 TGAAGTTATGCACGAGCGTAATGCTCATAACTTTCCACTTGACT 26780 ||| ||||||| || || |||||||||||||| || || |||| Sbjct 48907155 GGAATTTATGCATGAACGCAATGCTCATAACTTCCCTCTAGACT 48907112 >seq12 Length=67145203 Score = 96.9 bits (106), Expect = 1e-15 Identities = 139/190 (73%), Gaps = 6/190 (3%) Strand=Plus/Minus Query 26105 CACTTCTTAATAGGAGTAGCAGCATATGCA-GGGAGAC-AGTGGGAACT-ATCTTACAGA 26161 ||||||||||| || ||||| || || ||| | ||||||| || | ||| | | Sbjct 45738452 CACTTCTTAATTGGCGTAGCTTGTTA--CATGGGTCATGAGTGGGAGCTTAGCTTCC-GT 45738396 Query 26162 CTAGGAATGAGACCATGGATATTTGTTGCATATACAGCACCACTATCCGCAGCTCTCGCA 26221 || || ||| |||| ||||| |||||||||| |||| || | || ||| |||| Sbjct 45738395 CTGGGTATGCGACCTTGGATTGCTGTTGCATATTCAGCTCCTGTTGTAGCTGCTACCGCA 45738336 Query 26222 GTGTTCTTAGTTTATCCTTTCGGACAAGGGAGTTTTAGTGATGGAATGCCTCTTGGTATC 26281 || ||||| | || || |||| ||||| |||||| |||||| |||||||| || ||| Sbjct 45738335 GTTTTCTTGATCTACCCAATCGGTCAAGGAAGTTTTTCTGATGGTATGCCTCTAGGAATC 45738276 Query 26282 TCTGGTACTT 26291 |||||||||| Sbjct 45738275 TCTGGTACTT 45738266 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 146720920227480