Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Solanum_20lycopersicum_20[refseq_20GCF_5F000188115.3_202014-10-16]
3,145 sequences; 823,786,402 total letters
Query= NC_016657.1
Length=47055
Score E
Sequences producing significant alignments: (Bits) Value
seq3145 536 4e-148
seq2 320 5e-83
seq5 187 7e-43
seq1 174 5e-39
seq11 122 3e-23
seq12 102 2e-17
seq3 80.6 8e-11
>seq3145
Length=155461
Score = 536 bits (594), Expect = 4e-148
Identities = 711/987 (72%), Gaps = 0/987 (0%)
Strand=Plus/Plus
Query 35969 AGCTGCTAGGTCAAGTGGGAAGTTGTGTGCGTTACGCTCATGCATAACTTCCATGCCTAA 36028
||| |||||||| || |||||||| || || ||||| ||||||||||||||||| || |
Sbjct 564 AGCAGCTAGGTCTAGAGGGAAGTTATGAGCATTACGTTCATGCATAACTTCCATACCAAG 623
Query 36029 GTCGGCACGGTTAAGAATGTCAGCCCAAGTTGGGACGACTCTTCCGTTGGAATCAACGAC 36088
|| |||||||| | || ||||||||||| | || | || | ||||| ||
Sbjct 624 GTTAGCACGGTTGATGATATCAGCCCAAGTGTTAATTACACGACCCTGACTGTCAACTAC 683
Query 36089 TGACTGATTGAAGTTAAAGCCGTTGAGATTAAAAGCCATAGTGGAGACTCCCATAGCGGT 36148
|| || ||||| || || || || || || |||||||||||| || || | ||||||
Sbjct 684 AGATTGGTTGAAATTGAAACCATTTAGGTTGAAAGCCATAGTGCTGATACCTAAAGCGGT 743
Query 36149 AAGCCATATGCAAGTGACGGGCCAAGCAGCCAGGAAGAAATGTAAACTGCGGCTATTATT 36208
|| ||| || | || ||||||||||| |||||||| ||||| || || ||
Sbjct 744 AAACCAGATACCTACTACAGGCCAAGCAGCTAGGAAGAAGTGTAACGAACGAGAGTTGTT 803
Query 36209 AAAGCTAGCATACTGGAAGATGAGTCTCCCAAAGTAGCCATGAGCCGCAACAATGTTATA 36268
|| |||||||| |||||||| | || ||||| || |||||||| || || || |||||
Sbjct 804 GAAACTAGCATATTGGAAGATCAATCGGCCAAAATAACCATGAGCGGCTACGATATTATA 863
Query 36269 CGTCTCTTCTTCTTGGCCGAATTTATATCCATAGTTCTGAGATTCAAGCCCAGTTGTTTC 36328
|| ||||| ||||| |||||| | || || | || ||||||| | || |||||
Sbjct 864 AGTTTCTTCCTCTTGACCGAATCTGTAACCTTCATTAGCAGATTCATTTTCTGTGGTTTC 923
Query 36329 ACGAATAAGTGAGGAAGTAACAAGACTTCCGTGCATAGCAGCGAATAAAGCTCCACCGAA 36388
| || | ||||| || | || ||||||||| ||||| | || |||||
Sbjct 924 CCTGATCAAACTAGAAGTTACCAAGGAACCATGCATAGCACTGAATAGGGAGCCGCCGAA 983
Query 36389 TACCCCTGCAACACCGAGCATATGGAACGGATGCATAAGGATATTGTGTTCTGCCTGAAA 36448
|||||| || || || | ||| || || || ||||||||||| |||||||| ||||| ||
Sbjct 984 TACCCCAGCTACGCCTAACATGTGAAATGGGTGCATAAGGATGTTGTGTTCAGCCTGGAA 1043
Query 36449 GACAAACATAAAATTGAAAGTCCCTGAAATACCAAGAGGCATACCATCAGAGAAACTCCC 36508
|||| ||| ||||||||||| || || || || ||||||||||||||||| ||||| ||
Sbjct 1044 TACAATCATGAAATTGAAAGTACCAGAGATTCCTAGAGGCATACCATCAGAAAAACTTCC 1103
Query 36509 TTGTCCAAAAGGGTAGACTAAGAATACAGCAAATGCTGCTGCAACAGGGGCTGAATAAGC 36568
||| || | ||||||| ||||| || || || ||||||||||| |||||||| ||
Sbjct 1104 TTGACCGATTGGGTAGATCAAGAAAACTGCGGTAGCAGCTGCAACAGGAGCTGAATATGC 1163
Query 36569 TACACATATCCACGGCCTCATACCTAGTCTATAACTAAGTTCCCATTGTCGTCCCAAGTA 36628
||| ||||| || | |||||| || | | ||||| ||||| | || |||| |||
Sbjct 1164 AACAGCAATCCAAGGTCGCATACCCAGACGGAAGCTAAGCTCCCACTCACGACCCATGTA 1223
Query 36629 AGCTGAGATACCAATGAGAAAGTGGAACACAATGAGTTGATATGGTCCTCCGTTATATAA 36688
| | | |||| | ||||| | ||||| |||| ||| || || ||||| |||||
Sbjct 1224 ACAAGCTACGCCAAGTAAGAAGTGTAGAACAATTAGTTCATAAGGACCACCGTTGTATAA 1283
Query 36689 CCACTCGTCGAGGGTTGCAGCTTCCCAGATTGGGTAGAAGTGAAGACCGATTGCGTTCGA 36748
||| || || | || ||| ||||||||||||||||| || || | ||| || || ||
Sbjct 1284 CCATTCATCAACGGATGCCGCTTCCCAGATTGGGTAAAAATGTAAACCTATAGCTGCAGA 1343
Query 36749 TGATGGGACGATTGCCCCAGAGATGATGTTGTTTCCATAGAGTAATGCTCCTGAGACAGG 36808
| || | || || || || || ||||||||||| || |||| | ||||| |||||
Sbjct 1344 AGTAGGAATAATGGCACCGGAAATAATGTTGTTTCCGTAAAGTAGAGACCCTGAAACAGG 1403
Query 36809 CTCACGAATACCATCTATATCCACGGGAGGCGCAGCAACAAATGCAATTAAAAATGCTGT 36868
|||||||||||||| || || || ||||| ||||||| || ||||| | |||| | |
Sbjct 1404 TTCACGAATACCATCAATGTCTACTGGAGGAGCAGCAATGAAGGCAATAATAAATACAGA 1463
Query 36869 CACTGCTGTTAAAAGTGCAGGGATCATTAGTACCCCAAACCACCCCACATAGAGGCGGTT 36928
||| || || | | ||||||||| | || |||||||| || | || || |||||
Sbjct 1464 AGTTGCCGTCAATAAGGTAGGGATCATCAAAACACCAAACCATCCAATGTAAAGACGGTT 1523
Query 36929 GTTTGTACTTGTAACCCAGTCACATAA 36955
| || || || | ||||| ||| ||
Sbjct 1524 TTCAGTGCTAGTTATCCAGTTACAGAA 1550
>seq2
Length=55340444
Score = 320 bits (354), Expect = 5e-83
Identities = 635/940 (68%), Gaps = 0/940 (0%)
Strand=Plus/Plus
Query 35969 AGCTGCTAGGTCAAGTGGGAAGTTGTGTGCGTTACGCTCATGCATAACTTCCATGCCTAA 36028
||| |||||||| || |||||||| | || || || ||||||||||||| ||| | |
Sbjct 13823761 AGCAGCTAGGTCTAGAGGGAAGTTATTAGCATTCCGTTCATGCATAACTTTCATACTAAG 13823820
Query 36029 GTCGGCACGGTTAAGAATGTCAGCCCAAGTTGGGACGACTCTTCCGTTGGAATCAACGAC 36088
|| |||||||| | || ||||||||||| || || | | | ||||| ||
Sbjct 13823821 GTTAGCACGGTTGATGATATCAGCCCAAGTGTTGATTACACGACACTGACTATCAAGTAC 13823880
Query 36089 TGACTGATTGAAGTTAAAGCCGTTGAGATTAAAAGCCATAGTGGAGACTCCCATAGCGGT 36148
|| || ||||| || || | || || || |||||||||||| || || | ||||||
Sbjct 13823881 AGATTGGTTGAAATTGAAACAATTTAGGTTGAAAGCCATAGTGCTGATACCTAAAGCGGT 13823940
Query 36149 AAGCCATATGCAAGTGACGGGCCAAGCAGCCAGGAAGAAATGTAAACTGCGGCTATTATT 36208
|| ||| || | || |||| ||| || | |||||| ||||| || || ||
Sbjct 13823941 AAACCAGATACCTAATACAGGCCTAGCGGCTAAGAAGAAGTGTAACGAACGAGATTTGTT 13824000
Query 36209 AAAGCTAGCATACTGGAAGATGAGTCTCCCAAAGTAGCCATGAGCCGCAACAATGTTATA 36268
|| |||||||| || ||||| | | ||||| | |||||||| | ||||| |||||
Sbjct 13824001 GAAACTAGCATATTGAAAGATCAATAGGCCAAAACAACCATGAGCGTCTACAATATTATA 13824060
Query 36269 CGTCTCTTCTTCTTGGCCGAATTTATATCCATAGTTCTGAGATTCAAGCCCAGTTGTTTC 36328
|| ||||| ||||| | |||| | || | | || ||||||| | | |||||
Sbjct 13824061 AGTTTCTTCCTCTTGACTGAATCTTTAACATTTATTGGCAGATTCATTTTCTATGGTTTC 13824120
Query 36329 ACGAATAAGTGAGGAAGTAACAAGACTTCCGTGCATAGCAGCGAATAAAGCTCCACCGAA 36388
| || | ||||| |||| | || | | | ||| |||| | || ||||
Sbjct 13824121 CCTGATCAAACTAGAAGTTACAAAGTTACCATACGTGGCACTAAATAGTGAGCCGTCGAA 13824180
Query 36389 TACCCCTGCAACACCGAGCATATGGAACGGATGCATAAGGATATTGTGTTCTGCCTGAAA 36448
||||| || || || | ||| || || || ||||||||||| |||| ||| ||||| ||
Sbjct 13824181 TACCCTAGCTACGCCTAACATGTGAAATGGGTGCATAAGGATGTTGTATTCGGCCTGGAA 13824240
Query 36449 GACAAACATAAAATTGAAAGTCCCTGAAATACCAAGAGGCATACCATCAGAGAAACTCCC 36508
|||| ||| ||||||||||| | || || || ||||||||||||||||| || | |
Sbjct 13824241 TACAATCATGAAATTGAAAGTGCAAGAGATTCCTAGAGGCATACCATCAGAAAAGTTTGC 13824300
Query 36509 TTGTCCAAAAGGGTAGACTAAGAATACAGCAAATGCTGCTGCAACAGGGGCTGAATAAGC 36568
||| || | ||||||| | ||| | | || | | |||||| ||| |||| ||
Sbjct 13824301 TTGACCGATTGGGTAGATAAGGAAAATTGTGGTAGCAGATCTAACAGGAGCTTAATATGC 13824360
Query 36569 TACACATATCCACGGCCTCATACCTAGTCTATAACTAAGTTCCCATTGTCGTCCCAAGTA 36628
||| ||||| || ||||||||||| | | ||||| ||||| | || ||| |||
Sbjct 13824361 AACAACAATCCAAGGTCTCATACCTAGACGGAAGCTAAGCTCCCAATCACGACCCTTGTA 13824420
Query 36629 AGCTGAGATACCAATGAGAAAGTGGAACACAATGAGTTGATATGGTCCTCCGTTATATAA 36688
| || | |||| | ||||| | | ||| |||| ||| || |||| |||||
Sbjct 13824421 ACAGGATACGCCAAGAAAGAAGTGTAGAAAAATTAGTTCATAATAACCATCGTTGTATAA 13824480
Query 36689 CCACTCGTCGAGGGTTGCAGCTTCCCAGATTGGGTAGAAGTGAAGACCGATTGCGTTCGA 36748
||| || | | || ||| || ||| | |||||||| || || | ||| || || ||
Sbjct 13824481 CCATTCATAAATGGATGCCGCATCCTAAATTGGGTAAAAATGTAAACCTATAGCTGCAGA 13824540
Query 36749 TGATGGGACGATTGCCCCAGAGATGATGTTGTTTCCATAGAGTAATGCTCCTGAGACAGG 36808
| || | || || || || || ||||||||| | || |||| | ||| | |||
Sbjct 13824541 AGTAGGAATAATCGCACCGGAAATAATGTTGTTTTCGTAAAGTAGAAACCTTGAAAAAGG 13824600
Query 36809 CTCACGAATACCATCTATATCCACGGGAGGCGCAGCAACAAATGCAATTAAAAATGCTGT 36868
|||||||||||||| || || | ||| ||| ||| || ||||| | |||| | |
Sbjct 13824601 TTCACGAATACCATCAATGTCTGCTGGACAAGCATCAATGAAGGCAATAATAAATACAGA 13824660
Query 36869 CACTGCTGTTAAAAGTGCAGGGATCATTAGTACCCCAAAC 36908
||| || || | | | ||||||| | |||||||||
Sbjct 13824661 AGTTGCCGTCAATAAGGTATGGATCATGAAAACCCCAAAC 13824700
>seq5
Length=65875088
Score = 187 bits (206), Expect = 7e-43
Identities = 264/371 (71%), Gaps = 0/371 (0%)
Strand=Plus/Plus
Query 36543 GCTGCTGCAACAGGGGCTGAATAAGCTACACATATCCACGGCCTCATACCTAGTCTATAA 36602
|| ||||||||||| |||||||| || ||| ||||| || | |||||| || | |
Sbjct 14606152 GCAGCTGCAACAGGAGCTGAATATGCAACAGCAATCCAAGGTCGCATACCCAGACAGAAG 14606211
Query 36603 CTAAGTTCCCATTGTCGTCCCAAGTAAGCTGAGATACCAATGAGAAAGTGGAACACAATG 36662
||||| ||||| | | |||| |||| | | |||| | ||||| | |||||
Sbjct 14606212 CTAAGCTCCCACTCATGACCCATGTAACAAGCTACGCCAAGTAATAAGTGTAGAACAATT 14606271
Query 36663 AGTTGATATGGTCCTCCGTTATATAACCACTCGTCGAGGGTTGCAGCTTCCCAGATTGGG 36722
|||| ||| || || ||||| |||||||| || || | | ||| |||||||| ||||||
Sbjct 14606272 AGTTCATAAGGACCACCGTTGTATAACCATTCATCAACTGATGCCGCTTCCCACATTGGG 14606331
Query 36723 TAGAAGTGAAGACCGATTGCGTTCGATGATGGGACGATTGCCCCAGAGATGATGTTGTTT 36782
|| || || | ||| || || || | || | || || || || || |||||||||
Sbjct 14606332 TAAAAATGTAAACCTATAGCTGCAGAAGTAGGAATAATGGCACCGGAAATAATGTTGTTT 14606391
Query 36783 CCATAGAGTAATGCTCCTGAGACAGGCTCACGAATACCATCTATATCCACGGGAGGCGCA 36842
|| || |||| | ||||| ||||| |||||||||||||| || || || ||||| |||
Sbjct 14606392 CCGTAAAGTAGAGACCCTGAAACAGGTTCACGAATACCATCAATGTCTACTGGAGGAGCA 14606451
Query 36843 GCAACAAATGCAATTAAAAATGCTGTCACTGCTGTTAAAAGTGCAGGGATCATTAGTACC 36902
|||| || ||||| | |||| | | ||| || || | | ||||||||| | ||
Sbjct 14606452 GCAATGAAGGCAATAATAAATACAGAAGTTGCCGTCAATAAGGTAGGGATCATCAAAACA 14606511
Query 36903 CCAAACCACCC 36913
|||||||| ||
Sbjct 14606512 CCAAACCATCC 14606522
>seq1
Length=98543444
Score = 174 bits (192), Expect = 5e-39
Identities = 188/249 (76%), Gaps = 0/249 (0%)
Strand=Plus/Minus
Query 36381 CCACCGAATACCCCTGCAACACCGAGCATATGGAACGGATGCATAAGGATATTGTGTTCT 36440
|| ||||||||||| || || || | ||| || || || ||||||||||| ||||||||
Sbjct 45009700 CCGCCGAATACCCCAGCTACGCCTAACATGTGAAATGGGTGCATAAGGATCTTGTGTTCA 45009641
Query 36441 GCCTGAAAGACAAACATAAAATTGAAAGTCCCTGAAATACCAAGAGGCATACCATCAGAG 36500
||||| || |||| ||| |||||| |||| | || || || ||||||||||||||| |
Sbjct 45009640 GCCTGGAATACAATCATGAAATTGGAAGTACTAGAGATTCCTAGAGGCATACCATCATAA 45009581
Query 36501 AAACTCCCTTGTCCAAAAGGGTAGACTAAGAATACAGCAAATGCTGCTGCAACAGGGGCT 36560
||||| ||||| || | |||| || ||||| || || || ||||||||||| |||
Sbjct 45009580 AAACTTCCTTGACCGATTGGGTGGATCAAGAAAACTGCGGTAGCAGCTGCAACAGGAGCT 45009521
Query 36561 GAATAAGCTACACATATCCACGGCCTCATACCTAGTCTATAACTAAGTTCCCATTGTCGT 36620
||||| || ||| ||||| || | |||||| || | | ||||| ||||| | ||
Sbjct 45009520 GAATATGCAACAGCAATCCAAGGTCGCATACCAAGACGGAAGCTAAGCTCCCACTCACGA 45009461
Query 36621 CCCAAGTAA 36629
|||| ||||
Sbjct 45009460 CCCATGTAA 45009452
>seq11
Length=56302525
Score = 122 bits (134), Expect = 3e-23
Identities = 123/160 (77%), Gaps = 0/160 (0%)
Strand=Plus/Minus
Query 36363 ATAGCAGCGAATAAAGCTCCACCGAATACCCCTGCAACACCGAGCATATGGAACGGATGC 36422
|||||| ||||| | || || ||||||| || || || | |||||| || | |||
Sbjct 7156431 ATAGCACTGAATAGGGAGCCGCCAAATACCCTAGCTACGCCTAACATATGAAATGAGTGC 7156372
Query 36423 ATAAGGATATTGTGTTCTGCCTGAAAGACAAACATAAAATTGAAAGTCCCTGAAATACCA 36482
|||||||| |||||||| ||||| || |||| ||| ||||||||||| || || | ||
Sbjct 7156371 ATAAGGATGTTGTGTTCAGCCTGGAATACAATCATGAAATTGAAAGTACCAGAGACTCCT 7156312
Query 36483 AGAGGCATACCATCAGAGAAACTCCCTTGTCCAAAAGGGT 36522
||||||||||||| ||| ||||| ||||| || | ||||
Sbjct 7156311 AGAGGCATACCATTAGAAAAACTTCCTTGACCGATTGGGT 7156272
>seq12
Length=67145203
Score = 102 bits (112), Expect = 2e-17
Identities = 121/164 (74%), Gaps = 0/164 (0%)
Strand=Plus/Plus
Query 36466 AAGTCCCTGAAATACCAAGAGGCATACCATCAGAGAAACTCCCTTGTCCAAAAGGGTAGA 36525
|||| || || || || ||||||||||||||||| ||||| ||||| || | |||||||
Sbjct 45738266 AAGTACCAGAGATTCCTAGAGGCATACCATCAGAAAAACTTCCTTGACCGATTGGGTAGA 45738325
Query 36526 CTAAGAATACAGCAAATGCTGCTGCAACAGGGGCTGAATAAGCTACACATATCCACGGCC 36585
||||| || || || ||| ||||||| |||||||| || ||| ||||| || |
Sbjct 45738326 TCAAGAAAACTGCGGTAGCAGCTACAACAGGAGCTGAATATGCAACAGCAATCCAAGGTC 45738385
Query 36586 TCATACCTAGTCTATAACTAAGTTCCCATTGTCGTCCCAAGTAA 36629
|||||| || | | ||||| ||||| | | |||| ||||
Sbjct 45738386 GCATACCCAGACGGAAGCTAAGCTCCCACTCATGACCCATGTAA 45738429
>seq3
Length=70787664
Score = 80.6 bits (88), Expect = 8e-11
Identities = 117/163 (72%), Gaps = 2/163 (1%)
Strand=Plus/Plus
Query 35970 GCTGCTAGGTCAAGTGGGAAGTTGTGTGCGTTACGCTCATGCATAACTTCCATGCCTAAG 36029
||| |||| || || |||||||| || || || || |||||||||| |||||| || | |
Sbjct 48907106 GCTCCTAG-TCTAGAGGGAAGTTATGAGCATTGCGTTCATGCATAAATTCCATACCAAGG 48907164
Query 36030 TCGGCACGGTTAAGAATGTCAGCCCAAGTTGGGACG-ACTCTTCCGTTGGAATCAACGAC 36088
| |||||||| | || |||||||||||| | || | || | ||||| |
Sbjct 48907165 TTAGCACGGTTGATGATATCAGCCCAAGTTTTAATTTACACGACCCTGACTGTCAACTAT 48907224
Query 36089 TGACTGATTGAAGTTAAAGCCGTTGAGATTAAAAGCCATAGTG 36131
|| || ||||| || || || || || || ||||||||||||
Sbjct 48907225 AGATTGGTTGAAATTGAAACCATTTAGGTTGAAAGCCATAGTG 48907267
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 150448780998330
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