Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Solanum_20lycopersicum_20[refseq_20GCF_5F000188115.3_202014-10-16] 3,145 sequences; 823,786,402 total letters Query= NC_016657.1 Length=47055 Score E Sequences producing significant alignments: (Bits) Value seq3145 536 4e-148 seq2 320 5e-83 seq5 187 7e-43 seq1 174 5e-39 seq11 122 3e-23 seq12 102 2e-17 seq3 80.6 8e-11 >seq3145 Length=155461 Score = 536 bits (594), Expect = 4e-148 Identities = 711/987 (72%), Gaps = 0/987 (0%) Strand=Plus/Plus Query 35969 AGCTGCTAGGTCAAGTGGGAAGTTGTGTGCGTTACGCTCATGCATAACTTCCATGCCTAA 36028 ||| |||||||| || |||||||| || || ||||| ||||||||||||||||| || | Sbjct 564 AGCAGCTAGGTCTAGAGGGAAGTTATGAGCATTACGTTCATGCATAACTTCCATACCAAG 623 Query 36029 GTCGGCACGGTTAAGAATGTCAGCCCAAGTTGGGACGACTCTTCCGTTGGAATCAACGAC 36088 || |||||||| | || ||||||||||| | || | || | ||||| || Sbjct 624 GTTAGCACGGTTGATGATATCAGCCCAAGTGTTAATTACACGACCCTGACTGTCAACTAC 683 Query 36089 TGACTGATTGAAGTTAAAGCCGTTGAGATTAAAAGCCATAGTGGAGACTCCCATAGCGGT 36148 || || ||||| || || || || || || |||||||||||| || || | |||||| Sbjct 684 AGATTGGTTGAAATTGAAACCATTTAGGTTGAAAGCCATAGTGCTGATACCTAAAGCGGT 743 Query 36149 AAGCCATATGCAAGTGACGGGCCAAGCAGCCAGGAAGAAATGTAAACTGCGGCTATTATT 36208 || ||| || | || ||||||||||| |||||||| ||||| || || || Sbjct 744 AAACCAGATACCTACTACAGGCCAAGCAGCTAGGAAGAAGTGTAACGAACGAGAGTTGTT 803 Query 36209 AAAGCTAGCATACTGGAAGATGAGTCTCCCAAAGTAGCCATGAGCCGCAACAATGTTATA 36268 || |||||||| |||||||| | || ||||| || |||||||| || || || ||||| Sbjct 804 GAAACTAGCATATTGGAAGATCAATCGGCCAAAATAACCATGAGCGGCTACGATATTATA 863 Query 36269 CGTCTCTTCTTCTTGGCCGAATTTATATCCATAGTTCTGAGATTCAAGCCCAGTTGTTTC 36328 || ||||| ||||| |||||| | || || | || ||||||| | || ||||| Sbjct 864 AGTTTCTTCCTCTTGACCGAATCTGTAACCTTCATTAGCAGATTCATTTTCTGTGGTTTC 923 Query 36329 ACGAATAAGTGAGGAAGTAACAAGACTTCCGTGCATAGCAGCGAATAAAGCTCCACCGAA 36388 | || | ||||| || | || ||||||||| ||||| | || ||||| Sbjct 924 CCTGATCAAACTAGAAGTTACCAAGGAACCATGCATAGCACTGAATAGGGAGCCGCCGAA 983 Query 36389 TACCCCTGCAACACCGAGCATATGGAACGGATGCATAAGGATATTGTGTTCTGCCTGAAA 36448 |||||| || || || | ||| || || || ||||||||||| |||||||| ||||| || Sbjct 984 TACCCCAGCTACGCCTAACATGTGAAATGGGTGCATAAGGATGTTGTGTTCAGCCTGGAA 1043 Query 36449 GACAAACATAAAATTGAAAGTCCCTGAAATACCAAGAGGCATACCATCAGAGAAACTCCC 36508 |||| ||| ||||||||||| || || || || ||||||||||||||||| ||||| || Sbjct 1044 TACAATCATGAAATTGAAAGTACCAGAGATTCCTAGAGGCATACCATCAGAAAAACTTCC 1103 Query 36509 TTGTCCAAAAGGGTAGACTAAGAATACAGCAAATGCTGCTGCAACAGGGGCTGAATAAGC 36568 ||| || | ||||||| ||||| || || || ||||||||||| |||||||| || Sbjct 1104 TTGACCGATTGGGTAGATCAAGAAAACTGCGGTAGCAGCTGCAACAGGAGCTGAATATGC 1163 Query 36569 TACACATATCCACGGCCTCATACCTAGTCTATAACTAAGTTCCCATTGTCGTCCCAAGTA 36628 ||| ||||| || | |||||| || | | ||||| ||||| | || |||| ||| Sbjct 1164 AACAGCAATCCAAGGTCGCATACCCAGACGGAAGCTAAGCTCCCACTCACGACCCATGTA 1223 Query 36629 AGCTGAGATACCAATGAGAAAGTGGAACACAATGAGTTGATATGGTCCTCCGTTATATAA 36688 | | | |||| | ||||| | ||||| |||| ||| || || ||||| ||||| Sbjct 1224 ACAAGCTACGCCAAGTAAGAAGTGTAGAACAATTAGTTCATAAGGACCACCGTTGTATAA 1283 Query 36689 CCACTCGTCGAGGGTTGCAGCTTCCCAGATTGGGTAGAAGTGAAGACCGATTGCGTTCGA 36748 ||| || || | || ||| ||||||||||||||||| || || | ||| || || || Sbjct 1284 CCATTCATCAACGGATGCCGCTTCCCAGATTGGGTAAAAATGTAAACCTATAGCTGCAGA 1343 Query 36749 TGATGGGACGATTGCCCCAGAGATGATGTTGTTTCCATAGAGTAATGCTCCTGAGACAGG 36808 | || | || || || || || ||||||||||| || |||| | ||||| ||||| Sbjct 1344 AGTAGGAATAATGGCACCGGAAATAATGTTGTTTCCGTAAAGTAGAGACCCTGAAACAGG 1403 Query 36809 CTCACGAATACCATCTATATCCACGGGAGGCGCAGCAACAAATGCAATTAAAAATGCTGT 36868 |||||||||||||| || || || ||||| ||||||| || ||||| | |||| | | Sbjct 1404 TTCACGAATACCATCAATGTCTACTGGAGGAGCAGCAATGAAGGCAATAATAAATACAGA 1463 Query 36869 CACTGCTGTTAAAAGTGCAGGGATCATTAGTACCCCAAACCACCCCACATAGAGGCGGTT 36928 ||| || || | | ||||||||| | || |||||||| || | || || ||||| Sbjct 1464 AGTTGCCGTCAATAAGGTAGGGATCATCAAAACACCAAACCATCCAATGTAAAGACGGTT 1523 Query 36929 GTTTGTACTTGTAACCCAGTCACATAA 36955 | || || || | ||||| ||| || Sbjct 1524 TTCAGTGCTAGTTATCCAGTTACAGAA 1550 >seq2 Length=55340444 Score = 320 bits (354), Expect = 5e-83 Identities = 635/940 (68%), Gaps = 0/940 (0%) Strand=Plus/Plus Query 35969 AGCTGCTAGGTCAAGTGGGAAGTTGTGTGCGTTACGCTCATGCATAACTTCCATGCCTAA 36028 ||| |||||||| || |||||||| | || || || ||||||||||||| ||| | | Sbjct 13823761 AGCAGCTAGGTCTAGAGGGAAGTTATTAGCATTCCGTTCATGCATAACTTTCATACTAAG 13823820 Query 36029 GTCGGCACGGTTAAGAATGTCAGCCCAAGTTGGGACGACTCTTCCGTTGGAATCAACGAC 36088 || |||||||| | || ||||||||||| || || | | | ||||| || Sbjct 13823821 GTTAGCACGGTTGATGATATCAGCCCAAGTGTTGATTACACGACACTGACTATCAAGTAC 13823880 Query 36089 TGACTGATTGAAGTTAAAGCCGTTGAGATTAAAAGCCATAGTGGAGACTCCCATAGCGGT 36148 || || ||||| || || | || || || |||||||||||| || || | |||||| Sbjct 13823881 AGATTGGTTGAAATTGAAACAATTTAGGTTGAAAGCCATAGTGCTGATACCTAAAGCGGT 13823940 Query 36149 AAGCCATATGCAAGTGACGGGCCAAGCAGCCAGGAAGAAATGTAAACTGCGGCTATTATT 36208 || ||| || | || |||| ||| || | |||||| ||||| || || || Sbjct 13823941 AAACCAGATACCTAATACAGGCCTAGCGGCTAAGAAGAAGTGTAACGAACGAGATTTGTT 13824000 Query 36209 AAAGCTAGCATACTGGAAGATGAGTCTCCCAAAGTAGCCATGAGCCGCAACAATGTTATA 36268 || |||||||| || ||||| | | ||||| | |||||||| | ||||| ||||| Sbjct 13824001 GAAACTAGCATATTGAAAGATCAATAGGCCAAAACAACCATGAGCGTCTACAATATTATA 13824060 Query 36269 CGTCTCTTCTTCTTGGCCGAATTTATATCCATAGTTCTGAGATTCAAGCCCAGTTGTTTC 36328 || ||||| ||||| | |||| | || | | || ||||||| | | ||||| Sbjct 13824061 AGTTTCTTCCTCTTGACTGAATCTTTAACATTTATTGGCAGATTCATTTTCTATGGTTTC 13824120 Query 36329 ACGAATAAGTGAGGAAGTAACAAGACTTCCGTGCATAGCAGCGAATAAAGCTCCACCGAA 36388 | || | ||||| |||| | || | | | ||| |||| | || |||| Sbjct 13824121 CCTGATCAAACTAGAAGTTACAAAGTTACCATACGTGGCACTAAATAGTGAGCCGTCGAA 13824180 Query 36389 TACCCCTGCAACACCGAGCATATGGAACGGATGCATAAGGATATTGTGTTCTGCCTGAAA 36448 ||||| || || || | ||| || || || ||||||||||| |||| ||| ||||| || Sbjct 13824181 TACCCTAGCTACGCCTAACATGTGAAATGGGTGCATAAGGATGTTGTATTCGGCCTGGAA 13824240 Query 36449 GACAAACATAAAATTGAAAGTCCCTGAAATACCAAGAGGCATACCATCAGAGAAACTCCC 36508 |||| ||| ||||||||||| | || || || ||||||||||||||||| || | | Sbjct 13824241 TACAATCATGAAATTGAAAGTGCAAGAGATTCCTAGAGGCATACCATCAGAAAAGTTTGC 13824300 Query 36509 TTGTCCAAAAGGGTAGACTAAGAATACAGCAAATGCTGCTGCAACAGGGGCTGAATAAGC 36568 ||| || | ||||||| | ||| | | || | | |||||| ||| |||| || Sbjct 13824301 TTGACCGATTGGGTAGATAAGGAAAATTGTGGTAGCAGATCTAACAGGAGCTTAATATGC 13824360 Query 36569 TACACATATCCACGGCCTCATACCTAGTCTATAACTAAGTTCCCATTGTCGTCCCAAGTA 36628 ||| ||||| || ||||||||||| | | ||||| ||||| | || ||| ||| Sbjct 13824361 AACAACAATCCAAGGTCTCATACCTAGACGGAAGCTAAGCTCCCAATCACGACCCTTGTA 13824420 Query 36629 AGCTGAGATACCAATGAGAAAGTGGAACACAATGAGTTGATATGGTCCTCCGTTATATAA 36688 | || | |||| | ||||| | | ||| |||| ||| || |||| ||||| Sbjct 13824421 ACAGGATACGCCAAGAAAGAAGTGTAGAAAAATTAGTTCATAATAACCATCGTTGTATAA 13824480 Query 36689 CCACTCGTCGAGGGTTGCAGCTTCCCAGATTGGGTAGAAGTGAAGACCGATTGCGTTCGA 36748 ||| || | | || ||| || ||| | |||||||| || || | ||| || || || Sbjct 13824481 CCATTCATAAATGGATGCCGCATCCTAAATTGGGTAAAAATGTAAACCTATAGCTGCAGA 13824540 Query 36749 TGATGGGACGATTGCCCCAGAGATGATGTTGTTTCCATAGAGTAATGCTCCTGAGACAGG 36808 | || | || || || || || ||||||||| | || |||| | ||| | ||| Sbjct 13824541 AGTAGGAATAATCGCACCGGAAATAATGTTGTTTTCGTAAAGTAGAAACCTTGAAAAAGG 13824600 Query 36809 CTCACGAATACCATCTATATCCACGGGAGGCGCAGCAACAAATGCAATTAAAAATGCTGT 36868 |||||||||||||| || || | ||| ||| ||| || ||||| | |||| | | Sbjct 13824601 TTCACGAATACCATCAATGTCTGCTGGACAAGCATCAATGAAGGCAATAATAAATACAGA 13824660 Query 36869 CACTGCTGTTAAAAGTGCAGGGATCATTAGTACCCCAAAC 36908 ||| || || | | | ||||||| | ||||||||| Sbjct 13824661 AGTTGCCGTCAATAAGGTATGGATCATGAAAACCCCAAAC 13824700 >seq5 Length=65875088 Score = 187 bits (206), Expect = 7e-43 Identities = 264/371 (71%), Gaps = 0/371 (0%) Strand=Plus/Plus Query 36543 GCTGCTGCAACAGGGGCTGAATAAGCTACACATATCCACGGCCTCATACCTAGTCTATAA 36602 || ||||||||||| |||||||| || ||| ||||| || | |||||| || | | Sbjct 14606152 GCAGCTGCAACAGGAGCTGAATATGCAACAGCAATCCAAGGTCGCATACCCAGACAGAAG 14606211 Query 36603 CTAAGTTCCCATTGTCGTCCCAAGTAAGCTGAGATACCAATGAGAAAGTGGAACACAATG 36662 ||||| ||||| | | |||| |||| | | |||| | ||||| | ||||| Sbjct 14606212 CTAAGCTCCCACTCATGACCCATGTAACAAGCTACGCCAAGTAATAAGTGTAGAACAATT 14606271 Query 36663 AGTTGATATGGTCCTCCGTTATATAACCACTCGTCGAGGGTTGCAGCTTCCCAGATTGGG 36722 |||| ||| || || ||||| |||||||| || || | | ||| |||||||| |||||| Sbjct 14606272 AGTTCATAAGGACCACCGTTGTATAACCATTCATCAACTGATGCCGCTTCCCACATTGGG 14606331 Query 36723 TAGAAGTGAAGACCGATTGCGTTCGATGATGGGACGATTGCCCCAGAGATGATGTTGTTT 36782 || || || | ||| || || || | || | || || || || || ||||||||| Sbjct 14606332 TAAAAATGTAAACCTATAGCTGCAGAAGTAGGAATAATGGCACCGGAAATAATGTTGTTT 14606391 Query 36783 CCATAGAGTAATGCTCCTGAGACAGGCTCACGAATACCATCTATATCCACGGGAGGCGCA 36842 || || |||| | ||||| ||||| |||||||||||||| || || || ||||| ||| Sbjct 14606392 CCGTAAAGTAGAGACCCTGAAACAGGTTCACGAATACCATCAATGTCTACTGGAGGAGCA 14606451 Query 36843 GCAACAAATGCAATTAAAAATGCTGTCACTGCTGTTAAAAGTGCAGGGATCATTAGTACC 36902 |||| || ||||| | |||| | | ||| || || | | ||||||||| | || Sbjct 14606452 GCAATGAAGGCAATAATAAATACAGAAGTTGCCGTCAATAAGGTAGGGATCATCAAAACA 14606511 Query 36903 CCAAACCACCC 36913 |||||||| || Sbjct 14606512 CCAAACCATCC 14606522 >seq1 Length=98543444 Score = 174 bits (192), Expect = 5e-39 Identities = 188/249 (76%), Gaps = 0/249 (0%) Strand=Plus/Minus Query 36381 CCACCGAATACCCCTGCAACACCGAGCATATGGAACGGATGCATAAGGATATTGTGTTCT 36440 || ||||||||||| || || || | ||| || || || ||||||||||| |||||||| Sbjct 45009700 CCGCCGAATACCCCAGCTACGCCTAACATGTGAAATGGGTGCATAAGGATCTTGTGTTCA 45009641 Query 36441 GCCTGAAAGACAAACATAAAATTGAAAGTCCCTGAAATACCAAGAGGCATACCATCAGAG 36500 ||||| || |||| ||| |||||| |||| | || || || ||||||||||||||| | Sbjct 45009640 GCCTGGAATACAATCATGAAATTGGAAGTACTAGAGATTCCTAGAGGCATACCATCATAA 45009581 Query 36501 AAACTCCCTTGTCCAAAAGGGTAGACTAAGAATACAGCAAATGCTGCTGCAACAGGGGCT 36560 ||||| ||||| || | |||| || ||||| || || || ||||||||||| ||| Sbjct 45009580 AAACTTCCTTGACCGATTGGGTGGATCAAGAAAACTGCGGTAGCAGCTGCAACAGGAGCT 45009521 Query 36561 GAATAAGCTACACATATCCACGGCCTCATACCTAGTCTATAACTAAGTTCCCATTGTCGT 36620 ||||| || ||| ||||| || | |||||| || | | ||||| ||||| | || Sbjct 45009520 GAATATGCAACAGCAATCCAAGGTCGCATACCAAGACGGAAGCTAAGCTCCCACTCACGA 45009461 Query 36621 CCCAAGTAA 36629 |||| |||| Sbjct 45009460 CCCATGTAA 45009452 >seq11 Length=56302525 Score = 122 bits (134), Expect = 3e-23 Identities = 123/160 (77%), Gaps = 0/160 (0%) Strand=Plus/Minus Query 36363 ATAGCAGCGAATAAAGCTCCACCGAATACCCCTGCAACACCGAGCATATGGAACGGATGC 36422 |||||| ||||| | || || ||||||| || || || | |||||| || | ||| Sbjct 7156431 ATAGCACTGAATAGGGAGCCGCCAAATACCCTAGCTACGCCTAACATATGAAATGAGTGC 7156372 Query 36423 ATAAGGATATTGTGTTCTGCCTGAAAGACAAACATAAAATTGAAAGTCCCTGAAATACCA 36482 |||||||| |||||||| ||||| || |||| ||| ||||||||||| || || | || Sbjct 7156371 ATAAGGATGTTGTGTTCAGCCTGGAATACAATCATGAAATTGAAAGTACCAGAGACTCCT 7156312 Query 36483 AGAGGCATACCATCAGAGAAACTCCCTTGTCCAAAAGGGT 36522 ||||||||||||| ||| ||||| ||||| || | |||| Sbjct 7156311 AGAGGCATACCATTAGAAAAACTTCCTTGACCGATTGGGT 7156272 >seq12 Length=67145203 Score = 102 bits (112), Expect = 2e-17 Identities = 121/164 (74%), Gaps = 0/164 (0%) Strand=Plus/Plus Query 36466 AAGTCCCTGAAATACCAAGAGGCATACCATCAGAGAAACTCCCTTGTCCAAAAGGGTAGA 36525 |||| || || || || ||||||||||||||||| ||||| ||||| || | ||||||| Sbjct 45738266 AAGTACCAGAGATTCCTAGAGGCATACCATCAGAAAAACTTCCTTGACCGATTGGGTAGA 45738325 Query 36526 CTAAGAATACAGCAAATGCTGCTGCAACAGGGGCTGAATAAGCTACACATATCCACGGCC 36585 ||||| || || || ||| ||||||| |||||||| || ||| ||||| || | Sbjct 45738326 TCAAGAAAACTGCGGTAGCAGCTACAACAGGAGCTGAATATGCAACAGCAATCCAAGGTC 45738385 Query 36586 TCATACCTAGTCTATAACTAAGTTCCCATTGTCGTCCCAAGTAA 36629 |||||| || | | ||||| ||||| | | |||| |||| Sbjct 45738386 GCATACCCAGACGGAAGCTAAGCTCCCACTCATGACCCATGTAA 45738429 >seq3 Length=70787664 Score = 80.6 bits (88), Expect = 8e-11 Identities = 117/163 (72%), Gaps = 2/163 (1%) Strand=Plus/Plus Query 35970 GCTGCTAGGTCAAGTGGGAAGTTGTGTGCGTTACGCTCATGCATAACTTCCATGCCTAAG 36029 ||| |||| || || |||||||| || || || || |||||||||| |||||| || | | Sbjct 48907106 GCTCCTAG-TCTAGAGGGAAGTTATGAGCATTGCGTTCATGCATAAATTCCATACCAAGG 48907164 Query 36030 TCGGCACGGTTAAGAATGTCAGCCCAAGTTGGGACG-ACTCTTCCGTTGGAATCAACGAC 36088 | |||||||| | || |||||||||||| | || | || | ||||| | Sbjct 48907165 TTAGCACGGTTGATGATATCAGCCCAAGTTTTAATTTACACGACCCTGACTGTCAACTAT 48907224 Query 36089 TGACTGATTGAAGTTAAAGCCGTTGAGATTAAAAGCCATAGTG 36131 || || ||||| || || || || || || |||||||||||| Sbjct 48907225 AGATTGGTTGAAATTGAAACCATTTAGGTTGAAAGCCATAGTG 48907267 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 150448780998330