Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Solanum_20lycopersicum_20[refseq_20GCF_5F000188115.3_202014-10-16] 3,145 sequences; 823,786,402 total letters Query= NC_016659.1 Length=47536 Score E Sequences producing significant alignments: (Bits) Value seq3145 538 1e-148 seq2 322 1e-83 seq5 187 8e-43 seq1 170 6e-38 seq11 122 3e-23 seq12 98.7 3e-16 seq3 84.2 7e-12 seq364 82.4 2e-11 >seq3145 Length=155461 Score = 538 bits (596), Expect = 1e-148 Identities = 709/983 (72%), Gaps = 0/983 (0%) Strand=Plus/Plus Query 25453 GCTAAGTCAAGAGGGAAGTTGTGTGCGTTACGCTCATGCATAACTTCCATGCCTAAGTCG 25512 |||| ||| ||||||||||| || || ||||| ||||||||||||||||| || | || Sbjct 568 GCTAGGTCTAGAGGGAAGTTATGAGCATTACGTTCATGCATAACTTCCATACCAAGGTTA 627 Query 25513 GCACGGTTAAGAATGTCAGCCCAAGTTGGGACGACTCTTCCGTTGGAATCAACGACTGAC 25572 |||||||| | || ||||||||||| | || | || | ||||| || || Sbjct 628 GCACGGTTGATGATATCAGCCCAAGTGTTAATTACACGACCCTGACTGTCAACTACAGAT 687 Query 25573 TGATTGAAGTTAAAGCCGTTGAGATTAAAAGCCATAGTGGAGACTCCCATAGCGGTAAGC 25632 || ||||| || || || || || || |||||||||||| || || | |||||||| | Sbjct 688 TGGTTGAAATTGAAACCATTTAGGTTGAAAGCCATAGTGCTGATACCTAAAGCGGTAAAC 747 Query 25633 CATATGCAAGTGACGGGCCAAGCAGCCAGGAAGAAATGTAAACTACGGCTATTATTAAAG 25692 || || | || ||||||||||| |||||||| ||||| ||| || || || Sbjct 748 CAGATACCTACTACAGGCCAAGCAGCTAGGAAGAAGTGTAACGAACGAGAGTTGTTGAAA 807 Query 25693 CTAGCATACTGGAAGATGAGTCTCCCAAAGTAGCCATGAGCCGCAACAATGTTATACGTC 25752 |||||||| |||||||| | || ||||| || |||||||| || || || ||||| || Sbjct 808 CTAGCATATTGGAAGATCAATCGGCCAAAATAACCATGAGCGGCTACGATATTATAAGTT 867 Query 25753 TCTTCTTCTTGGCCGAATTTATATCCATAGTTCTGAGATTCAAGCCCAGTTGTTTCACGA 25812 ||||| ||||| |||||| | || || | || ||||||| | || ||||| | Sbjct 868 TCTTCCTCTTGACCGAATCTGTAACCTTCATTAGCAGATTCATTTTCTGTGGTTTCCCTG 927 Query 25813 ATAAGTGAGGAAGTAACAAGACTTCCGTGCATAGCAGCGAATAAAGCTCCACCGAATACC 25872 || | ||||| || | || ||||||||| ||||| | || ||||||||| Sbjct 928 ATCAAACTAGAAGTTACCAAGGAACCATGCATAGCACTGAATAGGGAGCCGCCGAATACC 987 Query 25873 CCTGCAACACCGAGCATATGGAACGGATGCATAAGGATATTGTGTTCTGCCTGAAAGACA 25932 || || || || | ||| || || || ||||||||||| |||||||| ||||| || ||| Sbjct 988 CCAGCTACGCCTAACATGTGAAATGGGTGCATAAGGATGTTGTGTTCAGCCTGGAATACA 1047 Query 25933 AACATAAAATTGAAAGTCCCTGAAATACCAAGAGGCATACCATCAGAGAAACTCCCTTGT 25992 | ||| ||||||||||| || || || || ||||||||||||||||| ||||| ||||| Sbjct 1048 ATCATGAAATTGAAAGTACCAGAGATTCCTAGAGGCATACCATCAGAAAAACTTCCTTGA 1107 Query 25993 CCAAAAGGGTAGACTAAGAATACAGCAAATGCTGCTGCAACAGGGGCTGAATAAGCTACA 26052 || | ||||||| ||||| || || || ||||||||||| |||||||| || ||| Sbjct 1108 CCGATTGGGTAGATCAAGAAAACTGCGGTAGCAGCTGCAACAGGAGCTGAATATGCAACA 1167 Query 26053 CATATCCACGGCCTCATGCCTAGTCTATAACTAAGTTCCCATTGTCGTCCCAAGTAAGCT 26112 ||||| || | ||| || || | | ||||| ||||| | || |||| |||| Sbjct 1168 GCAATCCAAGGTCGCATACCCAGACGGAAGCTAAGCTCCCACTCACGACCCATGTAACAA 1227 Query 26113 GAGATGCCGATGAGAAAGTGGAACACAATAAGTTGATATGGTCCACCGTTATACAACCAC 26172 | | ||| | | ||||| | ||||| |||| ||| || |||||||| || ||||| Sbjct 1228 GCTACGCCAAGTAAGAAGTGTAGAACAATTAGTTCATAAGGACCACCGTTGTATAACCAT 1287 Query 26173 TCGTCGAGGGTTGCAGCTTCCCAGATTGGGTAGAAGTGAAGACCGATTGCGTTAGATGAC 26232 || || | || ||| ||||||||||||||||| || || | ||| || || ||| | Sbjct 1288 TCATCAACGGATGCCGCTTCCCAGATTGGGTAAAAATGTAAACCTATAGCTGCAGAAGTA 1347 Query 26233 GGGACGATTGCCCCTGAGATGATGTTGTTTCCATAGAGTAATGCTCCTGAGACAGGCTCA 26292 || | || || || || || ||||||||||| || |||| | ||||| ||||| ||| Sbjct 1348 GGAATAATGGCACCGGAAATAATGTTGTTTCCGTAAAGTAGAGACCCTGAAACAGGTTCA 1407 Query 26293 CGAATACCATCTATATCCACGGGAGGCGCAGCAACAAATGCAATTAAAAATGCTGTCACT 26352 ||||||||||| || || || ||||| ||||||| || ||||| | |||| | | | Sbjct 1408 CGAATACCATCAATGTCTACTGGAGGAGCAGCAATGAAGGCAATAATAAATACAGAAGTT 1467 Query 26353 GCTGTTAAAAGTGCAGGGATCATTAGTACCCCAAACCACCCCACATAGAGGCGGTTGTTT 26412 || || || | | ||||||||| | || |||||||| || | || || ||||| | Sbjct 1468 GCCGTCAATAAGGTAGGGATCATCAAAACACCAAACCATCCAATGTAAAGACGGTTTTCA 1527 Query 26413 GTACTTGTAACCCAGTCACATAA 26435 || || || | ||||| ||| || Sbjct 1528 GTGCTAGTTATCCAGTTACAGAA 1550 >seq2 Length=55340444 Score = 322 bits (356), Expect = 1e-83 Identities = 633/936 (68%), Gaps = 0/936 (0%) Strand=Plus/Plus Query 25453 GCTAAGTCAAGAGGGAAGTTGTGTGCGTTACGCTCATGCATAACTTCCATGCCTAAGTCG 25512 |||| ||| ||||||||||| | || || || ||||||||||||| ||| | | || Sbjct 13823765 GCTAGGTCTAGAGGGAAGTTATTAGCATTCCGTTCATGCATAACTTTCATACTAAGGTTA 13823824 Query 25513 GCACGGTTAAGAATGTCAGCCCAAGTTGGGACGACTCTTCCGTTGGAATCAACGACTGAC 25572 |||||||| | || ||||||||||| || || | | | ||||| || || Sbjct 13823825 GCACGGTTGATGATATCAGCCCAAGTGTTGATTACACGACACTGACTATCAAGTACAGAT 13823884 Query 25573 TGATTGAAGTTAAAGCCGTTGAGATTAAAAGCCATAGTGGAGACTCCCATAGCGGTAAGC 25632 || ||||| || || | || || || |||||||||||| || || | |||||||| | Sbjct 13823885 TGGTTGAAATTGAAACAATTTAGGTTGAAAGCCATAGTGCTGATACCTAAAGCGGTAAAC 13823944 Query 25633 CATATGCAAGTGACGGGCCAAGCAGCCAGGAAGAAATGTAAACTACGGCTATTATTAAAG 25692 || || | || |||| ||| || | |||||| ||||| ||| || || || Sbjct 13823945 CAGATACCTAATACAGGCCTAGCGGCTAAGAAGAAGTGTAACGAACGAGATTTGTTGAAA 13824004 Query 25693 CTAGCATACTGGAAGATGAGTCTCCCAAAGTAGCCATGAGCCGCAACAATGTTATACGTC 25752 |||||||| || ||||| | | ||||| | |||||||| | ||||| ||||| || Sbjct 13824005 CTAGCATATTGAAAGATCAATAGGCCAAAACAACCATGAGCGTCTACAATATTATAAGTT 13824064 Query 25753 TCTTCTTCTTGGCCGAATTTATATCCATAGTTCTGAGATTCAAGCCCAGTTGTTTCACGA 25812 ||||| ||||| | |||| | || | | || ||||||| | | ||||| | Sbjct 13824065 TCTTCCTCTTGACTGAATCTTTAACATTTATTGGCAGATTCATTTTCTATGGTTTCCCTG 13824124 Query 25813 ATAAGTGAGGAAGTAACAAGACTTCCGTGCATAGCAGCGAATAAAGCTCCACCGAATACC 25872 || | ||||| |||| | || | | | ||| |||| | || |||||||| Sbjct 13824125 ATCAAACTAGAAGTTACAAAGTTACCATACGTGGCACTAAATAGTGAGCCGTCGAATACC 13824184 Query 25873 CCTGCAACACCGAGCATATGGAACGGATGCATAAGGATATTGTGTTCTGCCTGAAAGACA 25932 | || || || | ||| || || || ||||||||||| |||| ||| ||||| || ||| Sbjct 13824185 CTAGCTACGCCTAACATGTGAAATGGGTGCATAAGGATGTTGTATTCGGCCTGGAATACA 13824244 Query 25933 AACATAAAATTGAAAGTCCCTGAAATACCAAGAGGCATACCATCAGAGAAACTCCCTTGT 25992 | ||| ||||||||||| | || || || ||||||||||||||||| || | |||| Sbjct 13824245 ATCATGAAATTGAAAGTGCAAGAGATTCCTAGAGGCATACCATCAGAAAAGTTTGCTTGA 13824304 Query 25993 CCAAAAGGGTAGACTAAGAATACAGCAAATGCTGCTGCAACAGGGGCTGAATAAGCTACA 26052 || | ||||||| | ||| | | || | | |||||| ||| |||| || ||| Sbjct 13824305 CCGATTGGGTAGATAAGGAAAATTGTGGTAGCAGATCTAACAGGAGCTTAATATGCAACA 13824364 Query 26053 CATATCCACGGCCTCATGCCTAGTCTATAACTAAGTTCCCATTGTCGTCCCAAGTAAGCT 26112 ||||| || ||||| ||||| | | ||||| ||||| | || ||| |||| Sbjct 13824365 ACAATCCAAGGTCTCATACCTAGACGGAAGCTAAGCTCCCAATCACGACCCTTGTAACAG 13824424 Query 26113 GAGATGCCGATGAGAAAGTGGAACACAATAAGTTGATATGGTCCACCGTTATACAACCAC 26172 || | ||| | | ||||| | | ||| |||| ||| ||| |||| || ||||| Sbjct 13824425 GATACGCCAAGAAAGAAGTGTAGAAAAATTAGTTCATAATAACCATCGTTGTATAACCAT 13824484 Query 26173 TCGTCGAGGGTTGCAGCTTCCCAGATTGGGTAGAAGTGAAGACCGATTGCGTTAGATGAC 26232 || | | || ||| || ||| | |||||||| || || | ||| || || ||| | Sbjct 13824485 TCATAAATGGATGCCGCATCCTAAATTGGGTAAAAATGTAAACCTATAGCTGCAGAAGTA 13824544 Query 26233 GGGACGATTGCCCCTGAGATGATGTTGTTTCCATAGAGTAATGCTCCTGAGACAGGCTCA 26292 || | || || || || || ||||||||| | || |||| | ||| | ||| ||| Sbjct 13824545 GGAATAATCGCACCGGAAATAATGTTGTTTTCGTAAAGTAGAAACCTTGAAAAAGGTTCA 13824604 Query 26293 CGAATACCATCTATATCCACGGGAGGCGCAGCAACAAATGCAATTAAAAATGCTGTCACT 26352 ||||||||||| || || | ||| ||| ||| || ||||| | |||| | | | Sbjct 13824605 CGAATACCATCAATGTCTGCTGGACAAGCATCAATGAAGGCAATAATAAATACAGAAGTT 13824664 Query 26353 GCTGTTAAAAGTGCAGGGATCATTAGTACCCCAAAC 26388 || || || | | | ||||||| | ||||||||| Sbjct 13824665 GCCGTCAATAAGGTATGGATCATGAAAACCCCAAAC 13824700 >seq5 Length=65875088 Score = 187 bits (206), Expect = 8e-43 Identities = 264/371 (71%), Gaps = 0/371 (0%) Strand=Plus/Plus Query 26023 GCTGCTGCAACAGGGGCTGAATAAGCTACACATATCCACGGCCTCATGCCTAGTCTATAA 26082 || ||||||||||| |||||||| || ||| ||||| || | ||| || || | | Sbjct 14606152 GCAGCTGCAACAGGAGCTGAATATGCAACAGCAATCCAAGGTCGCATACCCAGACAGAAG 14606211 Query 26083 CTAAGTTCCCATTGTCGTCCCAAGTAAGCTGAGATGCCGATGAGAAAGTGGAACACAATA 26142 ||||| ||||| | | |||| |||| | | ||| | | ||||| | ||||| Sbjct 14606212 CTAAGCTCCCACTCATGACCCATGTAACAAGCTACGCCAAGTAATAAGTGTAGAACAATT 14606271 Query 26143 AGTTGATATGGTCCACCGTTATACAACCACTCGTCGAGGGTTGCAGCTTCCCAGATTGGG 26202 |||| ||| || |||||||| || ||||| || || | | ||| |||||||| |||||| Sbjct 14606272 AGTTCATAAGGACCACCGTTGTATAACCATTCATCAACTGATGCCGCTTCCCACATTGGG 14606331 Query 26203 TAGAAGTGAAGACCGATTGCGTTAGATGACGGGACGATTGCCCCTGAGATGATGTTGTTT 26262 || || || | ||| || || ||| | || | || || || || || ||||||||| Sbjct 14606332 TAAAAATGTAAACCTATAGCTGCAGAAGTAGGAATAATGGCACCGGAAATAATGTTGTTT 14606391 Query 26263 CCATAGAGTAATGCTCCTGAGACAGGCTCACGAATACCATCTATATCCACGGGAGGCGCA 26322 || || |||| | ||||| ||||| |||||||||||||| || || || ||||| ||| Sbjct 14606392 CCGTAAAGTAGAGACCCTGAAACAGGTTCACGAATACCATCAATGTCTACTGGAGGAGCA 14606451 Query 26323 GCAACAAATGCAATTAAAAATGCTGTCACTGCTGTTAAAAGTGCAGGGATCATTAGTACC 26382 |||| || ||||| | |||| | | ||| || || | | ||||||||| | || Sbjct 14606452 GCAATGAAGGCAATAATAAATACAGAAGTTGCCGTCAATAAGGTAGGGATCATCAAAACA 14606511 Query 26383 CCAAACCACCC 26393 |||||||| || Sbjct 14606512 CCAAACCATCC 14606522 >seq1 Length=98543444 Score = 170 bits (188), Expect = 6e-38 Identities = 187/249 (75%), Gaps = 0/249 (0%) Strand=Plus/Minus Query 25861 CCACCGAATACCCCTGCAACACCGAGCATATGGAACGGATGCATAAGGATATTGTGTTCT 25920 || ||||||||||| || || || | ||| || || || ||||||||||| |||||||| Sbjct 45009700 CCGCCGAATACCCCAGCTACGCCTAACATGTGAAATGGGTGCATAAGGATCTTGTGTTCA 45009641 Query 25921 GCCTGAAAGACAAACATAAAATTGAAAGTCCCTGAAATACCAAGAGGCATACCATCAGAG 25980 ||||| || |||| ||| |||||| |||| | || || || ||||||||||||||| | Sbjct 45009640 GCCTGGAATACAATCATGAAATTGGAAGTACTAGAGATTCCTAGAGGCATACCATCATAA 45009581 Query 25981 AAACTCCCTTGTCCAAAAGGGTAGACTAAGAATACAGCAAATGCTGCTGCAACAGGGGCT 26040 ||||| ||||| || | |||| || ||||| || || || ||||||||||| ||| Sbjct 45009580 AAACTTCCTTGACCGATTGGGTGGATCAAGAAAACTGCGGTAGCAGCTGCAACAGGAGCT 45009521 Query 26041 GAATAAGCTACACATATCCACGGCCTCATGCCTAGTCTATAACTAAGTTCCCATTGTCGT 26100 ||||| || ||| ||||| || | ||| || || | | ||||| ||||| | || Sbjct 45009520 GAATATGCAACAGCAATCCAAGGTCGCATACCAAGACGGAAGCTAAGCTCCCACTCACGA 45009461 Query 26101 CCCAAGTAA 26109 |||| |||| Sbjct 45009460 CCCATGTAA 45009452 >seq11 Length=56302525 Score = 122 bits (134), Expect = 3e-23 Identities = 123/160 (77%), Gaps = 0/160 (0%) Strand=Plus/Minus Query 25843 ATAGCAGCGAATAAAGCTCCACCGAATACCCCTGCAACACCGAGCATATGGAACGGATGC 25902 |||||| ||||| | || || ||||||| || || || | |||||| || | ||| Sbjct 7156431 ATAGCACTGAATAGGGAGCCGCCAAATACCCTAGCTACGCCTAACATATGAAATGAGTGC 7156372 Query 25903 ATAAGGATATTGTGTTCTGCCTGAAAGACAAACATAAAATTGAAAGTCCCTGAAATACCA 25962 |||||||| |||||||| ||||| || |||| ||| ||||||||||| || || | || Sbjct 7156371 ATAAGGATGTTGTGTTCAGCCTGGAATACAATCATGAAATTGAAAGTACCAGAGACTCCT 7156312 Query 25963 AGAGGCATACCATCAGAGAAACTCCCTTGTCCAAAAGGGT 26002 ||||||||||||| ||| ||||| ||||| || | |||| Sbjct 7156311 AGAGGCATACCATTAGAAAAACTTCCTTGACCGATTGGGT 7156272 >seq12 Length=67145203 Score = 98.7 bits (108), Expect = 3e-16 Identities = 120/164 (73%), Gaps = 0/164 (0%) Strand=Plus/Plus Query 25946 AAGTCCCTGAAATACCAAGAGGCATACCATCAGAGAAACTCCCTTGTCCAAAAGGGTAGA 26005 |||| || || || || ||||||||||||||||| ||||| ||||| || | ||||||| Sbjct 45738266 AAGTACCAGAGATTCCTAGAGGCATACCATCAGAAAAACTTCCTTGACCGATTGGGTAGA 45738325 Query 26006 CTAAGAATACAGCAAATGCTGCTGCAACAGGGGCTGAATAAGCTACACATATCCACGGCC 26065 ||||| || || || ||| ||||||| |||||||| || ||| ||||| || | Sbjct 45738326 TCAAGAAAACTGCGGTAGCAGCTACAACAGGAGCTGAATATGCAACAGCAATCCAAGGTC 45738385 Query 26066 TCATGCCTAGTCTATAACTAAGTTCCCATTGTCGTCCCAAGTAA 26109 ||| || || | | ||||| ||||| | | |||| |||| Sbjct 45738386 GCATACCCAGACGGAAGCTAAGCTCCCACTCATGACCCATGTAA 45738429 >seq3 Length=70787664 Score = 84.2 bits (92), Expect = 7e-12 Identities = 113/156 (72%), Gaps = 1/156 (1%) Strand=Plus/Plus Query 25457 AGTCAAGAGGGAAGTTGTGTGCGTTACGCTCATGCATAACTTCCATGCCTAAGTCGGCAC 25516 |||| ||||||||||| || || || || |||||||||| |||||| || | || |||| Sbjct 48907112 AGTCTAGAGGGAAGTTATGAGCATTGCGTTCATGCATAAATTCCATACCAAGGTTAGCAC 48907171 Query 25517 GGTTAAGAATGTCAGCCCAAGTTGGGACG-ACTCTTCCGTTGGAATCAACGACTGACTGA 25575 |||| | || |||||||||||| | || | || | ||||| | || || Sbjct 48907172 GGTTGATGATATCAGCCCAAGTTTTAATTTACACGACCCTGACTGTCAACTATAGATTGG 48907231 Query 25576 TTGAAGTTAAAGCCGTTGAGATTAAAAGCCATAGTG 25611 ||||| || || || || || || |||||||||||| Sbjct 48907232 TTGAAATTGAAACCATTTAGGTTGAAAGCCATAGTG 48907267 >seq364 Length=5030 Score = 82.4 bits (90), Expect = 2e-11 Identities = 150/219 (68%), Gaps = 3/219 (1%) Strand=Plus/Minus Query 26190 TTCCCAGATTGGGTAGAAGTGAAGACCGATTGCGTTAGATGACGGGACGATTGCCCCTGA 26249 ||||||||||||| | || || | ||| || || ||| | || | || || | || Sbjct 3595 TTCCCAGATTGGGCAAAAATGTAAACCTATAGCTGCAGAAGTAGGAATAATGGCACAGGA 3536 Query 26250 GATGATGTTGTTTCCATAGAGTAATGCTCCTGAGACAGGCTCACGAATACCATCTATATC 26309 || |||| |||||| || |||| | | | | | | | |||||||||||||| || | Sbjct 3535 AATAATGTCGTTTCCGTAAAGTAGAGACCGTCAAAAAAGTTCACGAATACCATCAATGT- 3477 Query 26310 CACGGGAGGCGCAGCAACAAATGCAATTAAAAATGCTGTCACTGCTGTTAAAAGTGCAGG 26369 | ||||| ||||||| || ||||| | |||| | | ||| || || | | ||| Sbjct 3476 --CTGGAGGAGCAGCAATGAAGGCAATAATAAATACAGAAGTTGCCGTCAATAAGGTAGG 3419 Query 26370 GATCATTAGTACCCCAAACCACCCCACATAGAGGCGGTT 26408 |||||| | || |||||||| || | || || ||||| Sbjct 3418 GATCATCAAAACACCAAACCATCCAATGTAAAGACGGTT 3380 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 151987923514020