Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Solanum_20lycopersicum_20[refseq_20GCF_5F000188115.3_202014-10-16]
3,145 sequences; 823,786,402 total letters
Query= NC_016924.1
Length=185139
Score E
Sequences producing significant alignments: (Bits) Value
seq2 154 2e-32
>seq2
Length=55340444
Score = 154 bits (170), Expect = 2e-32
Identities = 396/597 (66%), Gaps = 11/597 (2%)
Strand=Plus/Minus
Query 37173 AAACATGCAAAATCACAATGTAAACCTTCATCTCTACTTATCAATTCATTAGAAAAGGTT 37232
||||| ||||||||||| || |||||||| ||||| || || ||||| || ||||||
Sbjct 54781790 AAACACGCAAAATCACAGTGCAAACCTTCGTCTCTTGAAATTAACTCATTTGAGAAGGTT 54781731
Query 37233 AATCCTGGCATTAAACCTCtttttttAATCCAAAATATTGCTGCAAAAG-ATCCAGAAAA 37291
||||| |||||||| || | |||||| | ||||||||| | || ||| ||| ||
Sbjct 54781730 AATCCAGGCATTAACCCCCGTTTTTTCAACCAAAATATCG-AACAGAAGCTTCCGCTGAA 54781672
Query 37292 GAAAATACCTTCAACTGCTGCAAATGCTACAAGACGTGTACCGAAAGTT--GAACTATAA 37349
|||||| |||||||| ||||| || || | ||| |||||||| | ||
Sbjct 54781671 GAAAATCCCTTCAACACAAGCAAAAGCCACCAAACGCTCCGCGAAAGTTTCGGAC----- 54781617
Query 37350 TCAGAAATCCAtttttttGTCCAATCTGCCTTTAATTTAACACATTCAATTGTTTCAATT 37409
|| ||||| | ||| | ||||| || |||||| ||||| ||||||
Sbjct 54781616 CCATCGATCCAACGAAGGGCCCATTTCGCCTTCTTTTCAACACAAGGGATTGTCTCAATT 54781557
Query 37410 GCTTTTAAGAGAAAGtttttttCTTCACTATCTGTTATATAAGTATCAATTAGTAAACTA 37469
|| || | | | ||||| ||| ||| | || || | || | || |||||
Sbjct 54781556 GCACGGAACAATTTGCTCTTTTCGTCAGAATCCTTGATGTACGACTCCAACAGCAAACTG 54781497
Query 37470 TACATTTCAGAGTGAATATTTTCAATAGCTATCTGAAAACCATAAAAACACCTAGCTTCA 37529
||||| || || || ||||| ||||| || || || || ||||| ||| | ||| ||
Sbjct 54781496 TACATCTCGGAATGGATATTCTCAATGGCGATTTGGAACCCATAGAAAGCACGAGCCTCG 54781437
Query 37530 GATAATTGAACATCGTTAAAAAACCTCTTAGCTAAGTTTTCATTAACTATCCCATCACTA 37589
| | || ||||| || | ||||| ||| | ||| || ||| || || ||
Sbjct 54781436 GCAACCTGGACATCTTTCATGAACCTTCCAGCGAGGTTCTCTAAAACGATGCCGTCTGAG 54781377
Query 37590 GCTGCAAAGAAAGCAAGAACATATTTTATAAAATGTCTTTCATCATTTGATAATTTTTTC 37649
|| ||||| || |||||||||| | || ||||| |||||| | || || |||| |
Sbjct 54781376 GCGGCAAAAAAGGCAAGAACATGAGTGATGAAATGCCTTTCACCGGATGTTAGGTTTTCC 54781317
Query 37650 CAATCATTAATATCTTTTGATAAATCAACTTCATCAACGGTCCAAAAACTTGCCAATGCA 37709
|| | | | |||| | || | ||| ||||| || | ||||| ||| ||||| ||
Sbjct 54781316 CAGTGACGAGTATCGGTGGAGAGATCGACTTCTTCTGCCGTCCAGAAAGATGCCATGGCT 54781257
Query 37710 CGTTTATACATCGTCCAAATATCATTATGTTGTATTGGAAATATTACA-AATCTATC 37765
|| ||||| |||||| | || || ||||| || | |||| |||| |||
Sbjct 54781256 TTCTTGTACATTTCCCAAATCTGTGGATACTGAATTGGGAACA-TACAGAATCGATC 54781201
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 592293514545800
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |