Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Solanum_20lycopersicum_20[refseq_20GCF_5F000188115.3_202014-10-16] 3,145 sequences; 823,786,402 total letters Query= NC_016924.1 Length=185139 Score E Sequences producing significant alignments: (Bits) Value seq2 154 2e-32 >seq2 Length=55340444 Score = 154 bits (170), Expect = 2e-32 Identities = 396/597 (66%), Gaps = 11/597 (2%) Strand=Plus/Minus Query 37173 AAACATGCAAAATCACAATGTAAACCTTCATCTCTACTTATCAATTCATTAGAAAAGGTT 37232 ||||| ||||||||||| || |||||||| ||||| || || ||||| || |||||| Sbjct 54781790 AAACACGCAAAATCACAGTGCAAACCTTCGTCTCTTGAAATTAACTCATTTGAGAAGGTT 54781731 Query 37233 AATCCTGGCATTAAACCTCtttttttAATCCAAAATATTGCTGCAAAAG-ATCCAGAAAA 37291 ||||| |||||||| || | |||||| | ||||||||| | || ||| ||| || Sbjct 54781730 AATCCAGGCATTAACCCCCGTTTTTTCAACCAAAATATCG-AACAGAAGCTTCCGCTGAA 54781672 Query 37292 GAAAATACCTTCAACTGCTGCAAATGCTACAAGACGTGTACCGAAAGTT--GAACTATAA 37349 |||||| |||||||| ||||| || || | ||| |||||||| | || Sbjct 54781671 GAAAATCCCTTCAACACAAGCAAAAGCCACCAAACGCTCCGCGAAAGTTTCGGAC----- 54781617 Query 37350 TCAGAAATCCAtttttttGTCCAATCTGCCTTTAATTTAACACATTCAATTGTTTCAATT 37409 || ||||| | ||| | ||||| || |||||| ||||| |||||| Sbjct 54781616 CCATCGATCCAACGAAGGGCCCATTTCGCCTTCTTTTCAACACAAGGGATTGTCTCAATT 54781557 Query 37410 GCTTTTAAGAGAAAGtttttttCTTCACTATCTGTTATATAAGTATCAATTAGTAAACTA 37469 || || | | | ||||| ||| ||| | || || | || | || ||||| Sbjct 54781556 GCACGGAACAATTTGCTCTTTTCGTCAGAATCCTTGATGTACGACTCCAACAGCAAACTG 54781497 Query 37470 TACATTTCAGAGTGAATATTTTCAATAGCTATCTGAAAACCATAAAAACACCTAGCTTCA 37529 ||||| || || || ||||| ||||| || || || || ||||| ||| | ||| || Sbjct 54781496 TACATCTCGGAATGGATATTCTCAATGGCGATTTGGAACCCATAGAAAGCACGAGCCTCG 54781437 Query 37530 GATAATTGAACATCGTTAAAAAACCTCTTAGCTAAGTTTTCATTAACTATCCCATCACTA 37589 | | || ||||| || | ||||| ||| | ||| || ||| || || || Sbjct 54781436 GCAACCTGGACATCTTTCATGAACCTTCCAGCGAGGTTCTCTAAAACGATGCCGTCTGAG 54781377 Query 37590 GCTGCAAAGAAAGCAAGAACATATTTTATAAAATGTCTTTCATCATTTGATAATTTTTTC 37649 || ||||| || |||||||||| | || ||||| |||||| | || || |||| | Sbjct 54781376 GCGGCAAAAAAGGCAAGAACATGAGTGATGAAATGCCTTTCACCGGATGTTAGGTTTTCC 54781317 Query 37650 CAATCATTAATATCTTTTGATAAATCAACTTCATCAACGGTCCAAAAACTTGCCAATGCA 37709 || | | | |||| | || | ||| ||||| || | ||||| ||| ||||| || Sbjct 54781316 CAGTGACGAGTATCGGTGGAGAGATCGACTTCTTCTGCCGTCCAGAAAGATGCCATGGCT 54781257 Query 37710 CGTTTATACATCGTCCAAATATCATTATGTTGTATTGGAAATATTACA-AATCTATC 37765 || ||||| |||||| | || || ||||| || | |||| |||| ||| Sbjct 54781256 TTCTTGTACATTTCCCAAATCTGTGGATACTGAATTGGGAACA-TACAGAATCGATC 54781201 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 592293514545800