Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Solanum_20lycopersicum_20[refseq_20GCF_5F000188115.3_202014-10-16] 3,145 sequences; 823,786,402 total letters Query= NC_018504.1 Length=123876 Score E Sequences producing significant alignments: (Bits) Value seq11 149 5e-31 seq10 122 7e-23 seq7 116 3e-21 seq1 102 6e-17 seq12 100 2e-16 >seq11 Length=56302525 Score = 149 bits (164), Expect = 5e-31 Identities = 169/227 (74%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 101243 CCTCCTCTTAAACGTAAAACTAAATGAAGGGTAGATTCTTTTTGTATATTGTAATCGGCG 101302 || || | || ||| | || | |||||||||||| |||||||| || |||||||| || Sbjct 496559 CCACCACGTAGACGGAGGACAAGATGAAGGGTAGACTCTTTTTGGATGTTGTAATCAGCA 496500 Query 101303 ATAGTTCTGGCATCGTCCAATTGCTTACCTGCAAATATCAAACGCTGTTGATCGGGCGGA 101362 | |||| | |||| || | || || || ||||| |||| | ||| ||||| || ||| Sbjct 496499 AGTGTTCGGCCATCTTCAAGCTGTTTCCCAGCAAAGATCAGTCTCTGCTGATCTGGAGGA 496440 Query 101363 ATGCCTTCTTTATCTTGAATTTTTTGTTTTACAATTTCTACAGTGTCAGACGTTTCCACT 101422 |||||||| || |||||||| || ||| ||| | || | |||||||| | || || Sbjct 496439 ATGCCTTCCTTGTCTTGAATCTTAGCTTTGACATTATCAATGGTGTCAGAACTCTCAACC 496380 Query 101423 TCAAGAGTGACCGTTTTGCCGGTTAAAGTTTTTACAAATATCTGCAT 101469 |||||||||| || || ||||| | || || |||||||||||||| Sbjct 496379 TCAAGAGTGATGGTCTTTCCGGTGAGTGTCTTAACAAATATCTGCAT 496333 Score = 134 bits (148), Expect = 1e-26 Identities = 166/227 (73%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 101243 CCTCCTCTTAAACGTAAAACTAAATGAAGGGTAGATTCTTTTTGTATATTGTAATCGGCG 101302 |||||||| ||||| || || | ||| || || || || || || || ||||| || || Sbjct 497699 CCTCCTCTCAAACGCAACACCAGATGGAGAGTTGACTCCTTCTGGATGTTGTAGTCTGCA 497640 Query 101303 ATAGTTCTGGCATCGTCCAATTGCTTACCTGCAAATATCAAACGCTGTTGATCGGGCGGA 101362 | ||| || |||| || | ||| ||||| ||||| |||||||||||||| || || ||| Sbjct 497639 AGAGTCCTCCCATCCTCAAGTTGTTTACCAGCAAAGATCAAACGCTGTTGGTCTGGGGGA 497580 Query 101363 ATGCCTTCTTTATCTTGAATTTTTTGTTTTACAATTTCTACAGTGTCAGACGTTTCCACT 101422 || || || || |||||||| ||| ||| ||| | || | || || || | || || Sbjct 497579 ATACCCTCCTTGTCTTGAATCTTTGCTTTCACATTGTCAATGGTATCTGAACTCTCAACC 497520 Query 101423 TCAAGAGTGACCGTTTTGCCGGTTAAAGTTTTTACAAATATCTGCAT 101469 || | |||| || || || || ||||| || ||||| |||||||| Sbjct 497519 TCCAATGTGATTGTCTTCCCAGTCAAAGTCTTCACAAAGATCTGCAT 497473 Score = 123 bits (136), Expect = 2e-23 Identities = 167/230 (73%), Gaps = 2/230 (1%) Strand=Plus/Plus Query 101241 TTCCTCCTCTTAAACGTAAAACTAAATGAAGGGTAGATTCTTTTTGTATATTGTAATCGG 101300 |||| || | || ||| | || | ||| ||| |||| || | ||| || |||||||| | Sbjct 487499 TTCCACCACGTAGACGGAGGACAAGATGGAGG-TAGACTCGTCTTGGATGTTGTAATCAG 487557 Query 101301 CGATAGTTCTGGCATCGTCCAATTGCTTACCTGCAAATATCAAACGCTGTTGATCGGGCG 101360 | | ||| | |||| || | || || || ||||| |||| | ||| ||||| || | Sbjct 487558 CAACTGTTTGGCCATCTTCAAGCTGTTTCCCAGCAAAGATCAGCCTCTGCTGATCTGGAG 487617 Query 101361 GAATGCCTTCTTTATCTTGAATTTTTTGTTTTACAATTTCTACAGTGTCAGACGTTTCCA 101420 |||||||||| || |||||||| || ||||||| | || ||||||||| | || | Sbjct 487618 GAATGCCTTCCTTGTCTTGAATCTTAGCTTTTACATTATCACTAGTGTCAGAGCTCTCGA 487677 Query 101421 CTTCAAGAGTGACCGTTTTGCCGGTTAAAGT-TTTTACAAATATCTGCAT 101469 | |||||||||| || || ||||| | || || |||||||||||||| Sbjct 487678 CCTCAAGAGTGATGGTCTTTCCGGTGAGCGTCTTAAACAAATATCTGCAT 487727 Score = 123 bits (136), Expect = 2e-23 Identities = 149/203 (73%), Gaps = 0/203 (0%) Strand=Plus/Minus Query 101267 TGAAGGGTAGATTCTTTTTGTATATTGTAATCGGCGATAGTTCTGGCATCGTCCAATTGC 101326 |||||||| || || ||||| || |||||||| || | |||| | |||| || | || Sbjct 496763 TGAAGGGTGGACTCCTTTTGGATGTTGTAATCAGCAAGTGTTCGGCCATCTTCAAGCTGT 496704 Query 101327 TTACCTGCAAATATCAAACGCTGTTGATCGGGCGGAATGCCTTCTTTATCTTGAATTTTT 101386 || || ||||| |||| | ||| || || || ||||| ||||| || ||||||||||| Sbjct 496703 TTCCCAGCAAAGATCAGCCTCTGCTGGTCTGGGGGAATACCTTCCTTGTCTTGAATTTTA 496644 Query 101387 TGTTTTACAATTTCTACAGTGTCAGACGTTTCCACTTCAAGAGTGACCGTTTTGCCGGTT 101446 ||| ||| | || | ||||| || | || || |||||||| | || || ||||| Sbjct 496643 GCTTTGACATTATCGATGGTGTCTGAGCTCTCGACCTCAAGAGTTATAGTCTTTCCGGTC 496584 Query 101447 AAAGTTTTTACAAATATCTGCAT 101469 | |||||| ||||| || ||||| Sbjct 496583 AGAGTTTTAACAAAGATTTGCAT 496561 Score = 123 bits (136), Expect = 2e-23 Identities = 164/228 (72%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 101243 CCTCCTCTTAAACGTAAAACTAAATGAAGGGTAGATTCTTTTTGTATATTGTAATCGGCG 101302 |||||||| ||||| || || | ||| || || || || || || || ||||| || || Sbjct 497471 CCTCCTCTCAAACGCAACACCAGATGGAGAGTTGACTCCTTCTGGATGTTGTAGTCTGCA 497412 Query 101303 ATAGTTCTGGCATCGTCCAATTGCTTACCTGCAAATATCAAACGCTGTTGATCGGGCGGA 101362 | ||| || | || || | ||| ||||| ||||| |||||||||||||| || || ||| Sbjct 497411 AGAGTCCTCCCGTCCTCAAGTTGTTTACCAGCAAAGATCAAACGCTGTTGGTCTGGGGGA 497352 Query 101363 ATGCCTTCTTTATCTTGAATTTTTTGTTTTACAATTTCTACAGTGTCAGACGTTTCCACT 101422 || || || || |||||||| ||| ||| ||| | || | || || || | || || Sbjct 497351 ATACCCTCCTTGTCTTGAATCTTTGCTTTCACATTGTCAATGGTATCTGAACTCTCAACC 497292 Query 101423 TCAAGAGTGACCGTTTTGCCGGTTAAAGTTTTTACAAATATCTGCATG 101470 || | || | || || || || ||||| || ||||| || |||||| Sbjct 497291 TCCAATGTAATTGTCTTCCCAGTCAAAGTCTTGACAAAAATTTGCATG 497244 >seq10 Length=65527505 Score = 122 bits (134), Expect = 7e-23 Identities = 154/212 (73%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 101258 AAAACTAAATGAAGGGTAGATTCTTTTTGTATATTGTAATCGGCGATAGTTCTGGCATCG 101317 || || | ||||||||| ||||| || || |||||||||||||| | || || |||| Sbjct 1071596 AACACAAGATGAAGGGTTGATTCCTTCTGAATATTGTAATCGGCTAATGTCCTTCCATCT 1071655 Query 101318 TCCAATTGCTTACCTGCAAATATCAAACGCTGTTGATCGGGCGGAATGCCTTCTTTATCT 101377 ||||| ||||| || ||||| ||||| | || || || || || || || ||||| || Sbjct 1071656 TCCAACTGCTTGCCAGCAAAAATCAACCTTTGCTGGTCTGGTGGGATACCCTCTTTGTCC 1071715 Query 101378 TGAATTTTTTGTTTTACAATTTCTACAGTGTCAGACGTTTCCACTTCAAGAGTGACCGTT 101437 ||||| || ||||| | || | ||||| || ||||||| ||||| || | || Sbjct 1071716 TGAATCTTGGCCTTTACGTTGTCAATGGTGTCGGAGCTTTCCACCTCAAGGGTAATAGTC 1071775 Query 101438 TTGCCGGTTAAAGTTTTTACAAATATCTGCAT 101469 ||||| || || || || || || || ||||| Sbjct 1071776 TTGCCAGTCAAGGTCTTCACGAAGATTTGCAT 1071807 Score = 122 bits (134), Expect = 7e-23 Identities = 153/210 (73%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 101261 ACTAAATGAAGGGTAGATTCTTTTTGTATATTGTAATCGGCGATAGTTCTGGCATCGTCC 101320 || || |||||||| ||||| || || || |||||||| || | || ||| | || || Sbjct 1072283 ACCAAGTGAAGGGTTGATTCCTTCTGGATGTTGTAATCAGCAAGGGTCCTGCCGTCCTCA 1072342 Query 101321 AATTGCTTACCTGCAAATATCAAACGCTGTTGATCGGGCGGAATGCCTTCTTTATCTTGA 101380 | ||||| || ||||| ||||| | || || || || ||||||||||| || ||||| Sbjct 1072343 AGCTGCTTGCCCGCAAAGATCAACCTTTGCTGGTCTGGGGGAATGCCTTCCTTGTCTTGG 1072402 Query 101381 ATTTTTTGTTTTACAATTTCTACAGTGTCAGACGTTTCCACTTCAAGAGTGACCGTTTTG 101440 || || || ||| | || | |||||||| |||| || ||||| |||| || || Sbjct 1072403 ATCTTAGCCTTAACATTGTCAATGGTGTCAGAGCTTTCAACCTCAAGGGTGATGGTCTTT 1072462 Query 101441 CCGGTTAAAGTTTTTACAAATATCTGCATG 101470 || || |||||||| || || || |||||| Sbjct 1072463 CCTGTCAAAGTTTTCACGAAAATTTGCATG 1072492 Score = 116 bits (128), Expect = 3e-21 Identities = 151/209 (72%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 101261 ACTAAATGAAGGGTAGATTCTTTTTGTATATTGTAATCGGCGATAGTTCTGGCATCGTCC 101320 || || || || || || ||||| || || |||||||| || | ||| | | || || Sbjct 1072511 ACCAAGTGGAGAGTTGACTCTTTCTGAATGTTGTAATCAGCTAGAGTACGACCGTCTTCA 1072570 Query 101321 AATTGCTTACCTGCAAATATCAAACGCTGTTGATCGGGCGGAATGCCTTCTTTATCTTGA 101380 | ||||| |||||||| |||| | ||| || || || ||||||||||| || || || Sbjct 1072571 AGCTGCTTTCCTGCAAAGATCAGCCTCTGCTGGTCTGGGGGAATGCCTTCCTTGTCCTGG 1072630 Query 101381 ATTTTTTGTTTTACAATTTCTACAGTGTCAGACGTTTCCACTTCAAGAGTGACCGTTTTG 101440 || || ||| ||| | || | ||||| || ||||||| ||||| |||| || || Sbjct 1072631 ATCTTGGCTTTAACATTGTCAATGGTGTCTGAGCTTTCCACCTCAAGGGTGATAGTCTTT 1072690 Query 101441 CCGGTTAAAGTTTTTACAAATATCTGCAT 101469 || || | ||||| |||||||||||||| Sbjct 1072691 CCAGTGAGGGTTTTAACAAATATCTGCAT 1072719 Score = 111 bits (122), Expect = 1e-19 Identities = 150/209 (72%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 101261 ACTAAATGAAGGGTAGATTCTTTTTGTATATTGTAATCGGCGATAGTTCTGGCATCGTCC 101320 || || |||||||| || || || || || |||||||| || | || ||| | || || Sbjct 1072055 ACCAAGTGAAGGGTTGACTCCTTCTGGATGTTGTAATCAGCAAGGGTCCTGCCGTCCTCA 1072114 Query 101321 AATTGCTTACCTGCAAATATCAAACGCTGTTGATCGGGCGGAATGCCTTCTTTATCTTGA 101380 | ||||| || ||||| ||||| | || || || || ||||||||||| || ||||| Sbjct 1072115 AGCTGCTTGCCCGCAAAGATCAACCTTTGCTGGTCTGGGGGAATGCCTTCCTTGTCTTGG 1072174 Query 101381 ATTTTTTGTTTTACAATTTCTACAGTGTCAGACGTTTCCACTTCAAGAGTGACCGTTTTG 101440 || || || ||| | || | ||||| || |||| || ||||| |||| || || Sbjct 1072175 ATCTTAGCCTTAACATTGTCAATGGTGTCGGAGCTTTCAACCTCAAGGGTGATGGTCTTT 1072234 Query 101441 CCGGTTAAAGTTTTTACAAATATCTGCAT 101469 || || ||||| || ||||| || ||||| Sbjct 1072235 CCAGTCAAAGTCTTCACAAAAATTTGCAT 1072263 Score = 98.7 bits (108), Expect = 8e-16 Identities = 105/139 (76%), Gaps = 0/139 (0%) Strand=Plus/Plus Query 101241 TTCCTCCTCTTAAACGTAAAACTAAATGAAGGGTAGATTCTTTTTGTATATTGTAATCGG 101300 ||||||| || | | | ||| | ||||| || |||||||| || || |||||||| | Sbjct 463799 TTCCTCCCCTGAGCCTCAGAACAAGGTGAAGAGTTGATTCTTTCTGAATGTTGTAATCAG 463858 Query 101301 CGATAGTTCTGGCATCGTCCAATTGCTTACCTGCAAATATCAAACGCTGTTGATCGGGCG 101360 | | ||||| |||| |||||||| || || ||||| |||| | ||| ||||| || | Sbjct 463859 CCAGGGTTCTACCATCTTCCAATTGTTTTCCAGCAAAAATCAGTCTCTGCTGATCAGGAG 463918 Query 101361 GAATGCCTTCTTTATCTTG 101379 | |||||||||||||| || Sbjct 463919 GTATGCCTTCTTTATCCTG 463937 Score = 89.7 bits (98), Expect = 4e-13 Identities = 147/212 (69%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 101258 AAAACTAAATGAAGGGTAGATTCTTTTTGTATATTGTAATCGGCGATAGTTCTGGCATCG 101317 || || | ||||| ||||| || ||||| ||||||||||| || | || |||| Sbjct 65066519 AAGACAAGATGAATTGTAGACTCCTTTTGAATATTGTAATCAGCAAGTGTATGATCATCC 65066578 Query 101318 TCCAATTGCTTACCTGCAAATATCAAACGCTGTTGATCGGGCGGAATGCCTTCTTTATCT 101377 | ||||| || || |||||| || | |||||||| | ||||| |||||||| ||| Sbjct 65066579 TTAAATTGTTTTCCACCAAATACTAATCTTTGTTGATCTGAGGGAATTCCTTCTTTGTCT 65066638 Query 101378 TGAATTTTTTGTTTTACAATTTCTACAGTGTCAGACGTTTCCACTTCAAGAGTGACCGTT 101437 | ||| ||| ||| ||| | | | |||| || | | ||| || ||||| | || Sbjct 65066639 TCAATCTTTGCTTTAACATTGTTAATGGTGTTGGAACTCTTCACATCCAGAGTAATGGTC 65066698 Query 101438 TTGCCGGTTAAAGTTTTTACAAATATCTGCAT 101469 || || | | |||||| ||||| || ||||| Sbjct 65066699 TTTCCAATGAGAGTTTTAACAAAGATTTGCAT 65066730 >seq7 Length=68045021 Score = 116 bits (128), Expect = 3e-21 Identities = 151/209 (72%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 101261 ACTAAATGAAGGGTAGATTCTTTTTGTATATTGTAATCGGCGATAGTTCTGGCATCGTCC 101320 || ||||| ||||| || || || || || ||||| || || | || | | |||| ||| Sbjct 66406553 ACCAAATGGAGGGTGGACTCCTTCTGGATGTTGTAGTCAGCTAGGGTGCGGCCATCTTCC 66406494 Query 101321 AATTGCTTACCTGCAAATATCAAACGCTGTTGATCGGGCGGAATGCCTTCTTTATCTTGA 101380 || ||||| |||||||| ||||| | ||| || || || ||||||||||| ||||| || Sbjct 66406493 AACTGCTTTCCTGCAAAGATCAACCTCTGCTGGTCTGGGGGAATGCCTTCCTTATCCTGG 66406434 Query 101381 ATTTTTTGTTTTACAATTTCTACAGTGTCAGACGTTTCCACTTCAAGAGTGACCGTTTTG 101440 || || || || | || | ||||| || |||| || ||||| || | ||| || Sbjct 66406433 ATCTTAGCCTTGACGTTGTCAATGGTGTCTGAGCTTTCGACCTCAAGGGTAATCGTCTTA 66406374 Query 101441 CCGGTTAAAGTTTTTACAAATATCTGCAT 101469 || || | ||| || || || |||||||| Sbjct 66406373 CCCGTGAGAGTCTTCACGAAGATCTGCAT 66406345 >seq1 Length=98543444 Score = 102 bits (112), Expect = 6e-17 Identities = 145/204 (71%), Gaps = 0/204 (0%) Strand=Plus/Minus Query 101266 ATGAAGGGTAGATTCTTTTTGTATATTGTAATCGGCGATAGTTCTGGCATCGTCCAATTG 101325 ||| || || || || || || || ||||| ||||| | ||| | |||| || | || Sbjct 57604311 ATGGAGAGTGGACTCCTTCTGGATGTTGTAGTCGGCAAGAGTACGACCATCCTCAAGCTG 57604252 Query 101326 CTTACCTGCAAATATCAAACGCTGTTGATCGGGCGGAATGCCTTCTTTATCTTGAATTTT 101385 ||| || || || ||||||||||| || || || ||||| ||||| || || || || || Sbjct 57604251 CTTTCCGGCGAAAATCAAACGCTGCTGGTCTGGGGGAATCCCTTCCTTGTCCTGGATCTT 57604192 Query 101386 TTGTTTTACAATTTCTACAGTGTCAGACGTTTCCACTTCAAGAGTGACCGTTTTGCCGGT 101445 ||| ||| | || | ||||| || | || || || || |||| ||| || || || Sbjct 57604191 GGCTTTCACATTGTCGATGGTGTCGGAAGACTCAACCTCTAGGGTGATCGTCTTCCCCGT 57604132 Query 101446 TAAAGTTTTTACAAATATCTGCAT 101469 || ||||| || || |||||||| Sbjct 57604131 TAGGGTTTTCACGAAGATCTGCAT 57604108 >seq12 Length=67145203 Score = 100 bits (110), Expect = 2e-16 Identities = 144/203 (71%), Gaps = 0/203 (0%) Strand=Plus/Plus Query 101267 TGAAGGGTAGATTCTTTTTGTATATTGTAATCGGCGATAGTTCTGGCATCGTCCAATTGC 101326 || ||||| || || || || || ||||| || || | |||| | |||| || | ||| Sbjct 66287165 TGGAGGGTGGACTCCTTCTGGATGTTGTAGTCAGCTAGCGTTCGGCCATCCTCGAGCTGC 66287224 Query 101327 TTACCTGCAAATATCAAACGCTGTTGATCGGGCGGAATGCCTTCTTTATCTTGAATTTTT 101386 ||||| || || ||||| ||||| || || || ||||||||||| || |||||||| || Sbjct 66287225 TTACCGGCGAAAATCAATCGCTGCTGGTCTGGTGGAATGCCTTCCTTGTCTTGAATCTTA 66287284 Query 101387 TGTTTTACAATTTCTACAGTGTCAGACGTTTCCACTTCAAGAGTGACCGTTTTGCCGGTT 101446 || ||| | || | ||||| || | || || || | || | || ||||| || Sbjct 66287285 GCCTTAACATTGTCAATGGTGTCTGATGACTCTACCTCCAAGGTAATGGTCTTGCCCGTC 66287344 Query 101447 AAAGTTTTTACAAATATCTGCAT 101469 | || || ||||| |||||||| Sbjct 66287345 AGGGTCTTCACAAAGATCTGCAT 66287367 Score = 91.5 bits (100), Expect = 1e-13 Identities = 142/203 (70%), Gaps = 0/203 (0%) Strand=Plus/Minus Query 101267 TGAAGGGTAGATTCTTTTTGTATATTGTAATCGGCGATAGTTCTGGCATCGTCCAATTGC 101326 || ||||| ||||| || || || ||||| || || | |||| | |||| || | ||| Sbjct 66338178 TGGAGGGTGGATTCCTTCTGGATGTTGTAGTCAGCTAGCGTTCGGCCATCCTCAAGCTGC 66338119 Query 101327 TTACCTGCAAATATCAAACGCTGTTGATCGGGCGGAATGCCTTCTTTATCTTGAATTTTT 101386 || || || || ||||| | ||| || || || ||||||||||| || || ||||| || Sbjct 66338118 TTTCCCGCGAAAATCAACCTCTGCTGGTCTGGTGGAATGCCTTCCTTGTCCTGAATCTTA 66338059 Query 101387 TGTTTTACAATTTCTACAGTGTCAGACGTTTCCACTTCAAGAGTGACCGTTTTGCCGGTT 101446 || ||| | || | || || || | || || || | || | || ||||| ||| Sbjct 66338058 GCCTTAACATTGTCAATGGTATCCGATGACTCTACCTCTAAGGTAATAGTCTTGCCCGTT 66337999 Query 101447 AAAGTTTTTACAAATATCTGCAT 101469 | || || ||||| |||||||| Sbjct 66337998 AGGGTCTTCACAAAGATCTGCAT 66337976 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 396263210772765