Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Solanum_20lycopersicum_20[refseq_20GCF_5F000188115.3_202014-10-16]
3,145 sequences; 823,786,402 total letters
Query= NC_018875.1
Length=119082
Score E
Sequences producing significant alignments: (Bits) Value
seq11 113 3e-20
seq12 105 5e-18
seq7 100 2e-16
>seq11
Length=56302525
Score = 113 bits (124), Expect = 3e-20
Identities = 154/215 (72%), Gaps = 0/215 (0%)
Strand=Plus/Minus
Query 48552 CGCAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGATAGACTTCGATCG 48611
|||||||||| ||| || || ||| || || || ||||| || | ||| | | ||
Sbjct 497459 CGCAACACCAGATGGAGAGTTGACTCCTTCTGGATGTTGTAGTCTGCAAGAGTCCTCCCG 497400
Query 48612 TCGTCCAACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCGTGGGAACGCCCTCCTTG 48671
|| || | || ||||| ||||| |||| |||||||| || | ||||| |||||||||
Sbjct 497399 TCCTCAAGTTGTTTACCAGCAAAGATCAAACGCTGTTGGTCTGGGGGAATACCCTCCTTG 497340
Query 48672 TCGCTAATCTTTTGTTTTACAGAACCCACAGACTCTGACGCCTCCACCTCCACCGTAATC 48731
|| ||||||| ||| ||| | | | ||||| ||| ||||||| |||||
Sbjct 497339 TCTTGAATCTTTGCTTTCACATTGTCAATGGTATCTGAACTCTCAACCTCCAATGTAATT 497280
Query 48732 GTTTTTCCCGTCAAAGTTTTTACAAAAATCTGCAT 48766
|| || || |||||||| || |||||||| |||||
Sbjct 497279 GTCTTCCCAGTCAAAGTCTTGACAAAAATTTGCAT 497245
Score = 105 bits (116), Expect = 5e-18
Identities = 153/216 (71%), Gaps = 0/216 (0%)
Strand=Plus/Minus
Query 48552 CGCAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGATAGACTTCGATCG 48611
|||||||||| ||| || || ||| || || || ||||| || | ||| | | |
Sbjct 497687 CGCAACACCAGATGGAGAGTTGACTCCTTCTGGATGTTGTAGTCTGCAAGAGTCCTCCCA 497628
Query 48612 TCGTCCAACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCGTGGGAACGCCCTCCTTG 48671
|| || | || ||||| ||||| |||| |||||||| || | ||||| |||||||||
Sbjct 497627 TCCTCAAGTTGTTTACCAGCAAAGATCAAACGCTGTTGGTCTGGGGGAATACCCTCCTTG 497568
Query 48672 TCGCTAATCTTTTGTTTTACAGAACCCACAGACTCTGACGCCTCCACCTCCACCGTAATC 48731
|| ||||||| ||| ||| | | | ||||| ||| ||||||| || ||
Sbjct 497567 TCTTGAATCTTTGCTTTCACATTGTCAATGGTATCTGAACTCTCAACCTCCAATGTGATT 497508
Query 48732 GTTTTTCCCGTCAAAGTTTTTACAAAAATCTGCATC 48767
|| || || |||||||| || ||||| |||||||||
Sbjct 497507 GTCTTCCCAGTCAAAGTCTTCACAAAGATCTGCATC 497472
Score = 89.7 bits (98), Expect = 4e-13
Identities = 161/233 (69%), Gaps = 2/233 (1%)
Strand=Plus/Minus
Query 48536 GTCGCCGCCCCTTAGCCGCAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATC 48595
||| ||||| | |||| || || | ||| || || |||||| || || || || ||
Sbjct 497931 GTCACCGCCACGGAGCCTCAGGACAAGATGAAGAGTAGACTCTTTCTGGATGTTATAGTC 497872
Query 48596 AGATAGACTTCGATCGTCGTCCAACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCG- 48654
| || | || | || || | ||||||||| ||||| || || | ||||||||| |
Sbjct 497871 TGCAAGGGTGCGGCCATCCTCAAGCTGCTTACCAGCAAAGATGAGCCTCTGTTGATCTGG 497812
Query 48655 TGGGAACGCCCTCCTTGTCGCTAATCTTTTGTTTTACAGAACCCACAGACTCTGACGCCT 48714
||||| | || |||||||| |||||| ||| ||| | | || || || ||
Sbjct 497811 TGGGATC-CCTTCCTTGTCCTGTATCTTTGCTTTCACATTGTCAATAGTATCAGAGCTCT 497753
Query 48715 CCACCTCCACCGTAATCGTTTTTCCCGTCAAAGTTTTTACAAAAATCTGCATC 48767
||||||||| || || || || || || | ||| || ||||| |||||||||
Sbjct 497752 CCACCTCCAATGTGATTGTCTTCCCAGTAAGAGTCTTCACAAAGATCTGCATC 497700
Score = 82.4 bits (90), Expect = 6e-11
Identities = 135/192 (70%), Gaps = 2/192 (1%)
Strand=Plus/Minus
Query 48576 TCTTTTTGAATATTGTAATCAGATAGACTTCGATCG-TCGTCCAACTGCTTACCGGCAAA 48634
||||| ||||| |||||||| | | || || || || || | ||||| || |||||
Sbjct 497207 TCTTTCTGAATGTTGTAATCTGCCA-ACGTCCTTCCATCCTCAAGTTGCTTTCCAGCAAA 497149
Query 48635 TATCAGTCGCTGTTGATCCGTGGGAACGCCCTCCTTGTCGCTAATCTTTTGTTTTACAGA 48694
|||| || ||| || || | |||| ||||||||||| |||||| ||| |||
Sbjct 497148 GATCAATCTCTGCTGGTCTGGAGGAATACCCTCCTTGTCTTGTATCTTTGCTTTAACATT 497089
Query 48695 ACCCACAGACTCTGACGCCTCCACCTCCACCGTAATCGTTTTTCCCGTCAAAGTTTTTAC 48754
| | || ||||| ||| ||||||| ||||| || || || ||||| || || ||
Sbjct 497088 GTCGATAGTATCTGAACTCTCAACCTCCAAAGTAATTGTCTTCCCTGTCAATGTCTTGAC 497029
Query 48755 AAAAATCTGCAT 48766
||| || |||||
Sbjct 497028 AAATATTTGCAT 497017
>seq12
Length=67145203
Score = 105 bits (116), Expect = 5e-18
Identities = 145/203 (71%), Gaps = 0/203 (0%)
Strand=Plus/Plus
Query 48564 TGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGATAGACTTCGATCGTCGTCCAACTGC 48623
|| || ||| ||| || || || ||||| |||| ||| |||| | || || | ||||
Sbjct 66287165 TGGAGGGTGGACTCCTTCTGGATGTTGTAGTCAGCTAGCGTTCGGCCATCCTCGAGCTGC 66287224
Query 48624 TTACCGGCAAATATCAGTCGCTGTTGATCCGTGGGAACGCCCTCCTTGTCGCTAATCTTT 48683
|||||||| || |||| |||||| || || | |||| ||| |||||||| ||||||
Sbjct 66287225 TTACCGGCGAAAATCAATCGCTGCTGGTCTGGTGGAATGCCTTCCTTGTCTTGAATCTTA 66287284
Query 48684 TGTTTTACAGAACCCACAGACTCTGACGCCTCCACCTCCACCGTAATCGTTTTTCCCGTC 48743
|| ||| | | | ||||| | ||| ||||||| ||||| || || ||||||
Sbjct 66287285 GCCTTAACATTGTCAATGGTGTCTGATGACTCTACCTCCAAGGTAATGGTCTTGCCCGTC 66287344
Query 48744 AAAGTTTTTACAAAAATCTGCAT 48766
| || || ||||| ||||||||
Sbjct 66287345 AGGGTCTTCACAAAGATCTGCAT 66287367
>seq7
Length=68045021
Score = 100 bits (110), Expect = 2e-16
Identities = 159/228 (70%), Gaps = 0/228 (0%)
Strand=Plus/Minus
Query 48540 CCGCCCCTTAGCCGCAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGAT 48599
|| || | ||| || | ||||||||| || ||| ||| || || || |||||||||| |
Sbjct 66406343 CCACCACGTAGACGGAGCACCAAATGGAGGGTGGACTCCTTCTGGATGTTGTAATCAGCT 66406284
Query 48600 AGACTTCGATCGTCGTCCAACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCGTGGGA 48659
||| | || |||| ||||||||||| || || || || || | || ||||||| ||||
Sbjct 66406283 AGAGTACGTCCGTCCTCCAACTGCTTTCCAGCGAAGATAAGCCTTTGCTGATCCGGGGGA 66406224
Query 48660 ACGCCCTCCTTGTCGCTAATCTTTTGTTTTACAGAACCCACAGACTCTGACGCCTCCACC 48719
| || ||||| || ||||| || || | | | || || ||||||
Sbjct 66406223 ATTCCTTCCTTATCCTGGATCTTAGCCTTAACGTTGTCGATTGTATCAGAACTTTCCACC 66406164
Query 48720 TCCACCGTAATCGTTTTTCCCGTCAAAGTTTTTACAAAAATCTGCATC 48767
|| | || || || ||||| || | |||||| ||||| |||||||||
Sbjct 66406163 TCTAGGGTGATAGTCTTTCCGGTGAGAGTTTTCACAAAGATCTGCATC 66406116
Score = 82.4 bits (90), Expect = 6e-11
Identities = 142/204 (70%), Gaps = 2/204 (1%)
Strand=Plus/Minus
Query 48564 TGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGATAGACTTCGATCGTCGTCCAACTGC 48623
|| || ||| ||| || || |||||||| |||| || | || | || || | ||||
Sbjct 66407459 TGCAGGGTGGACTCCTTCTGGATATTGTAGTCAGCAAGGGTGCGGCCATCCTCAAGCTGC 66407400
Query 48624 TTACCGGCAAATATCAGTCGCTGTTGATCCG-TGGGAACGCCCTCCTTGTCGCTAATCTT 48682
||||| || || |||| | ||| || || | ||||| | ||||||||||| ||||||
Sbjct 66407399 TTACCAGCGAAAATCAACCTCTGCTGGTCTGGTGGGATC-CCCTCCTTGTCCTGAATCTT 66407341
Query 48683 TTGTTTTACAGAACCCACAGACTCTGACGCCTCCACCTCCACCGTAATCGTTTTTCCCGT 48742
||| ||| | | | || || ||||||||||| || || || || || ||
Sbjct 66407340 AGCTTTCACATTGTCGATGGTGTCAGAACTCTCCACCTCCAAAGTGATGGTCTTCCCGGT 66407281
Query 48743 CAAAGTTTTTACAAAAATCTGCAT 48766
||| || || ||||| ||||||||
Sbjct 66407280 CAAGGTCTTCACAAAGATCTGCAT 66407257
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 380922998780835
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |