Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Solanum_20lycopersicum_20[refseq_20GCF_5F000188115.3_202014-10-16] 3,145 sequences; 823,786,402 total letters Query= NC_019401.1 Length=358663 Score E Sequences producing significant alignments: (Bits) Value seq3 107 4e-18 seq6 91.5 3e-13 >seq3 Length=70787664 Score = 107 bits (118), Expect = 4e-18 Identities = 326/494 (66%), Gaps = 16/494 (3%) Strand=Plus/Minus Query 150310 AGGTAAACTTGATCCACTAATTGGTCGCGAAACTGAACTT-GATGATCTAATTCAGATTC 150368 ||| ||||||||||| | |||||| | || ||| || || || |||||| ||||| Sbjct 65014961 AGGAAAACTTGATCCTGTGATTGGTAGGGATGAAGAAATTCGAAGAG-TAATTCGGATTC 65014903 Query 150369 TTTCTCGTAAAACCAAAAAGAAT--GGTGCGTTAGTTGGTGAACCAGGTGTTGGTAAAAC 150426 |||| | | || || || ||| ||||| ||| ||||||| || |||||||||||||| Sbjct 65014902 TTTCGAGGAGGACAAAGAACAATCCGGTGC-TTA-TTGGTGAGCCTGGTGTTGGTAAAAC 65014845 Query 150427 ACAAATCGTTGACGGATTAGCACAACGCATCGCTAATGGTGATGTTCCAGATTCTATGAA 150486 | | ||||| || |||||||| | || | | || ||||||||| | || Sbjct 65014844 AGCTGTAGTTGAAGGGCTAGCACAAAGGATAGTTCGAGGGGATGTTCCAAGCAATTTGGC 65014785 Query 150487 AGATGTTGAAATTCTTTCTTTGAATATGGGTGCATTTACTGCTGGTACTAAGTATCGTGG 150546 |||||| || | | ||| ||||||| ||| | | |||||| | ||||| | || Sbjct 65014784 TGATGTTAGGCTTATAGCATTGGATATGGGAGCACTCATTGCTGGAGCAAAGTACAGAGG 65014725 Query 150547 TGAATTCGAAGAACG--TGTAGACAATTTGCTACAAGAACTAAAAGAACGCGATG---AT 150601 |||||| ||||| | || || | | | || | ||| | |||| || | | Sbjct 65014724 TGAATTTGAAGAGAGATTGAAGGC--TGTTCTGAAGGAAGTGGAAGATGCAGAAGGGAAA 65014667 Query 150602 GTTATTCTGTTCATCGATGAAATCCATACTATTATGGGTGCTGGTGCGACTGGCGGCGGT 150661 || ||||| ||||| ||||| ||||| || | ||||||||| |||| | || Sbjct 65014666 GTAATTCTCTTCATTGATGAGATCCACTTGGTTTTAGGTGCTGGTAGGACT---GAAGGA 65014610 Query 150662 TCTTTGGATATGAGCAATATGTTAAAACCTGCTCTATCTCGCGGTGAAATTCGTGTCATC 150721 || ||||| |||| |||| ||||| || |||| || || | | ||| Sbjct 65014609 TCAATGGATGCTGCCAATTTGTTCAAACCGATGCTTGCTCGGGGCCAATTAAGGTGCATT 65014550 Query 150722 GGTGCAACAACCTACGATGAATATCGTAAACACATTGAAAAAGATGCAGCACTACAGCGT 150781 |||||||||||| || || || | || | | || |||||||| ||| | | | Sbjct 65014549 GGTGCAACAACCCTGGAAGAGTACAGGAAGTATGTGGAGAAAGATGCTGCATTCGAAAGG 65014490 Query 150782 CGTTTCATGAAGGT 150795 |||||| | |||| Sbjct 65014489 CGTTTCCAGCAGGT 65014476 >seq6 Length=49751636 Score = 91.5 bits (100), Expect = 3e-13 Identities = 177/255 (69%), Gaps = 6/255 (2%) Strand=Plus/Plus Query 150307 AGAAGGTAAACTTGATCCACTAATTGGTCGCGAAACTGAACTT-GATGATCTAATTCAGA 150365 || ||| ||||||||||| | |||||| | || ||| || || || | |||| || Sbjct 48340522 AGCAGGAAAACTTGATCCTGTGATTGGTAGGGATGAAGAAATTCGAAGAG-TGATTCGGA 48340580 Query 150366 TTCTTTCTCGTAAAACCAAAAAGAAT--GGTGCGTTAGTTGGTGAACCAGGTGTTGGTAA 150423 |||| || | | || || || ||| ||||| ||| ||||||| || ||||||||||| Sbjct 48340581 TTCTATCGAGGAGGACAAAGAACAATCCGGTGC-TTA-TTGGTGAGCCTGGTGTTGGTAA 48340638 Query 150424 AACACAAATCGTTGACGGATTAGCACAACGCATCGCTAATGGTGATGTTCCAGATTCTAT 150483 |||| | ||||| || |||||||| | || | | || ||||||||| | | | Sbjct 48340639 AACAGCTGTAGTTGAAGGGCTAGCACAAAGGATTGTTCGAGGCGATGTTCCAAGTAATTT 48340698 Query 150484 GAAAGATGTTGAAATTCTTTCTTTGAATATGGGTGCATTTACTGCTGGTACTAAGTATCG 150543 | ||||| | | | ||| ||||||| ||| | | |||||| || ||||| | Sbjct 48340699 GGCTGATGTCAGGGTGATCGCATTGGATATGGGAGCACTCATTGCTGGAACAAAGTACAG 48340758 Query 150544 TGGTGAATTCGAAGA 150558 |||||||| ||||| Sbjct 48340759 AGGTGAATTTGAAGA 48340773 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1147544157486210