Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Solanum_20lycopersicum_20[refseq_20GCF_5F000188115.3_202014-10-16] 3,145 sequences; 823,786,402 total letters Query= NC_019488.1 Length=34117 Score E Sequences producing significant alignments: (Bits) Value seq1141 421 1e-113 >seq1141 Length=3271 Score = 421 bits (466), Expect = 1e-113 Identities = 595/823 (72%), Gaps = 11/823 (1%) Strand=Plus/Minus Query 13305 CGGGTCATAACCGATCCACACTTCGCGCCAGCCAAACGGGCGCAGCG-CCAGCGCCTGAA 13363 |||||| || || | ||| || || || || || ||||| ||| ||| | | ||| Sbjct 3229 CGGGTCGTAGCCCACCCATACCTCACGATTACCGAAAGGGCGGGGCGACCAATGGCGGAA 3170 Query 13364 AATCGGTCCAGACTTCCCAGCTGTCCACCATGCA-CGCCTGCAGC-TCGCTGAGCGGGAA 13421 || ||| || ||||||||||| ||||||| ||| || ||| ||| |||||||| Sbjct 3169 G-TCCTCCCACACCTCCCAGCTGTCGACCATGCCGCGCATG-AGCATCGAC-AGCGGGAA 3113 Query 13422 CACGGACGCGAGATCGTCCACGAACTCACACATCAGCAGGTTCTGGTATTCGTCCGGGCT 13481 || || || || || | ||| | |||||||||||||||| | | || | ||| Sbjct 3112 GACAGAGGCCGTGTCATCGATGAAGCCGCACATCAGCAGGTTCTCGAAGTCCGCATCGCT 3053 Query 13482 GTACTCCATGCGCAGCTGGTCGAGGTCGAACAGGTTACAGCCGCCGCGCACCGCATCCTC 13541 |||||||| |||| ||||||||||||||||||||| ||||| ||| | || || || Sbjct 3052 GTACTCCAGCCGCAACTGGTCGAGGTCGAACAGGTTGCAGCCACCGGCGATGGCGTCTTC 2993 Query 13542 CACGGTGACGATCTGGCGGTACTGCCCGTCAGGGCAGAGCAGGCCGCGC-GCAAGGTTGC 13600 ||| ||||| ||||| |||| ||||| | ||| || ||||| | ||||| | || Sbjct 2992 CACCGTGACAATCTGTTTCCACTGACCGTCCGCGCACCGCCGGCCGTCCTGCAAGTTCGC 2933 Query 13601 TGTGGGTCAGGTTAATATCCACCTTGTCCGCTTTGGCACGGCCCCGGTTAAACAGCGCAC 13660 |||| | | || || | | ||| | || || || || || |||||||| | Sbjct 2932 -GTGGCTGACGTCAACGCGGATGTGGTCTTCCTTCTTCCGCCCGCGATTGAACAGCGCGC 2874 Query 13661 CGGACCAGAACGGATAAGCACTGTGGGTCAGGCTGGAGGGCGTGGAAAAATAGGTTTGTC 13720 | ||||||||||| || || ||||| ||||| || ||||| || ||||| || || | Sbjct 2873 CAGACCAGAACGGGTACGCTTCGTGGGCAAGGCTCGAAGGCGTCGAGAAATAAGTCTGCC 2814 Query 13721 GCCATTTTTTGTGAATGGCCATACCGGAAGCCACTTTGCGCAGTTCCTGGAATTTTGGTA 13780 |||| || ||| |||||||| ||||| ||||| |||||||| || ||||| | | Sbjct 2813 GCCACTTCGAGTGGATGGCCATCCCGGAGGCCACCTTGCGCAGCTCTTGGAAGCGCTGGA 2754 Query 13781 TCCAGAAATATTCATCCAGGTACAGATTACCGTGATAGCTCTGCGCCGTGCGGGCGTTGG 13840 ||||||| || || ||||| || || || ||||||||||||||||| ||||| ||||| | Sbjct 2753 TCCAGAAGTACTCGTCCAGATAGAGGTTGCCGTGATAGCTCTGCGCGGTGCGTGCGTTTG 2694 Query 13841 TGCCGAGAAAGTACAAAGCGGCCCCATTGGGTAACACCATGGGATCGCCTTTCAGCTCAA 13900 ||||||| || |||| | || || || || |||||||| || ||||| |||||||| | Sbjct 2693 TGCCGAGGAAATACAGCGTCGCGCCGTTCGGCAACACCATCGGCTCGCCCTTCAGCTCCA 2634 Query 13901 CATC--CA-CCTCTTTTGCAAAGTCGATGATGTACTGCTTAAAGACGTGCGCCTGTGCCT 13957 | | || | || || || || | ||||||||| ||||| || ||||| ||||| |||| Sbjct 2633 CGCCGGCAGCATCCTTCGCGAACTGGATGATGTATTGCTTGAAAACGTGGGCCTGCGCCT 2574 Query 13958 TACTGGCAGAAAGGAAAATCTGGTTGCGTCCGGTCAGCAGGGCGTCAATCAATGCTTCAC 14017 | ||||| || | ||||||||| ||||| || || || || ||||| || || || | Sbjct 2573 TGCTGGCCGACAAGAAAATCTGATTGCGCCCCGTGGTCAACGCATCAATGAAGGCCTCCC 2514 Query 14018 GGGCAAAATAAAACGTGGCGCCAATCTGGCGCGACTTGAGCAGGTTGCGGATGCGGTTTG 14077 | || ||||| ||||||| || |||||||| ||| || | |||||||| || | | Sbjct 2513 GTGCGAAATACCACGTGGCACCGATCTGGCGGCTCTTCAGAACATTGCGGATACGCTCTC 2454 Query 14078 TTTTCCCGGCTTCAAACCAGTGACGCTGATAGTCGAACATAGA 14120 | || ||||| ||||| |||||| ||||||||||| || Sbjct 2453 TGAGACCCGCTTCGTACCAGGCACGCTGGTAGTCGAACATTGA 2411 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 109048727218710