Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Solanum_20lycopersicum_20[refseq_20GCF_5F000188115.3_202014-10-16] 3,145 sequences; 823,786,402 total letters Query= NC_020852.1 Length=186468 Score E Sequences producing significant alignments: (Bits) Value seq4 113 5e-20 seq7 104 3e-17 >seq4 Length=66470942 Score = 113 bits (124), Expect = 5e-20 Identities = 192/276 (70%), Gaps = 2/276 (1%) Strand=Plus/Plus Query 175315 CCAGGTACGGGAAAGACCCTCCTCGCCCGAGCCATCGCGGGTGAATCAAATGTCCCATTC 175374 |||||||| ||||||||||| | || |||| | || ||||| | ||| ||||| Sbjct 65981708 CCAGGTACTGGAAAGACCCTTTTAGCTAGAGCAGTAGCTGGTGAGGCTGGTGTGCCATTT 65981767 Query 175375 ATCCAGTGCTCTGCCGCAAACTTTGTGGAGATGTTTGTTGGTGTGGGTGCCAAAAGGGTT 175434 || || | || || | ||||| ||| ||||||| |||||||| || || ||| Sbjct 65981768 TTCTCTTGTGCAGCGTCAGAGTTTGTTGAGTTGTTTGTGGGTGTGGGAGCTTCTAGAGTT 65981827 Query 175435 CGCGATCTCTTTGAAATCGC-CCGCGAAAATCAACCATGTATTGTCTTCATTGATGAGAT 175493 | ||| | ||||| | || | ||| | ||| |||||||| || ||||||||||| Sbjct 65981828 AGGGATTTGTTTGAGAAGGCGAAGTCTAAAGC-ACCTTGTATTGTGTTTATTGATGAGAT 65981886 Query 175494 TGATGCGGTGGGCAAGCAACGCAGCGCTGGTGGTATGCCAGCAAATGACGAGAGAGAACA 175553 |||||| ||||| | |||| | | || ||| | | |||||| ||||| || || Sbjct 65981887 TGATGCTGTGGGAAGGCAAAGAGGTGCAGGTCTTGGAGGTGGAAATGATGAGAGGGAGCA 65981946 Query 175554 AACAATTAATCAACTACTCACCGAGATGGATGGCTT 175589 || |||||||| || | || || |||||||| || Sbjct 65981947 GACTATTAATCAGCTTTTGACTGAAATGGATGGGTT 65981982 Score = 89.7 bits (98), Expect = 6e-13 Identities = 154/224 (69%), Gaps = 0/224 (0%) Strand=Plus/Plus Query 75131 GACTATGATTTTGGTTACTTTGGTCTCAAAACCCTTGAGAAGAGCTATCTTCAACGGCTC 75190 |||| ||| | || |||||||||| ||||||||||||| | | || ||| | | | Sbjct 50409106 GACTTTGACTATGATTACTTTGGTTTCAAAACCCTTGAAAGGTCTTACCTTTTAAAGATT 50409165 Query 75191 GATGGCATCCTCATGGAAACCCCACAGTACATGTTCATGCGGGTCGCAATCGGCATCCAC 75250 | || | | |||||| ||||| | ||| | ||| | || | | || |||||| Sbjct 50409166 CAGGGAAAGATTGTGGAAAGGCCACAACATATGCTGATGAGAGTATCTGTTGGAATCCAC 50409225 Query 75251 GGGGAAGACATTGATTCTGTCTTGGAGACATACGACAAGATGTCCCAAGGTATGTTCATT 75310 || || ||||| |||||| | ||||||| | |||||| ||| | ||||| | Sbjct 50409226 AAAGAGGATATTGAATCTGTCATCAAGACATATCATTTGATGTCTCAACGCTGGTTCACT 50409285 Query 75311 CACGCAACACCAACCCTCTTCAATGCTGGTACACCAAGACCGCA 75354 || ||| | ||||| || || |||||||| || ||||| || || Sbjct 50409286 CATGCATCTCCAACACTATTTAATGCTGGCACTCCAAGGCCTCA 50409329 >seq7 Length=68045021 Score = 104 bits (114), Expect = 3e-17 Identities = 277/419 (66%), Gaps = 6/419 (1%) Strand=Plus/Minus Query 175231 GAGATTGTGGATTTTCTCAAGCAACCCGAGAGATATTTTGGAAGTGGTGCCAAGATCCCC 175290 ||| | || || ||| | ||| |||| ||||||| | || | || || || || Sbjct 63395918 GAGGTCGTAGAATTTTTGAAGAAACCTGAGAGATTTACTGCAGTAGGGGCTCGTATTCCA 63395859 Query 175291 CGAGGCGCCCTTCTCGCGGGTAAGCCAGGTACGGGAAAGACCCTCCTCGCCCGAGCCATC 175350 ||| | ||||| | ||| || ||||| || || ||| | || || || || Sbjct 63395858 AAAGGTGTTCTTCTTGTTGGTCCTCCTGGTACTGGGAAAACCTTGCTAGCAAAGGCAATT 63395799 Query 175351 GCGGGTGAATCAAATGTCCCATTCATC-CAGTGCTCTGCCGCAAACTTTGTGGAGATGTT 175409 || |||||| | ||| ||||| || || | || | || | || || |||||||| Sbjct 63395798 GCTGGTGAAGCGGGTGTTCCATTTTTCTCAATT-TCAGGTTCAGAATTCGTTGAGATGTT 63395740 Query 175410 TGTTGGTGTGGGTGCCAAAAGGGTTCGCGATCTCTTTGAAATCGCCCGCGAAAATCAACC 175469 ||||||||| || ||| | || || ||||| || | | ||| |||||| || Sbjct 63395739 TGTTGGTGTTGGAGCCTCTCGAGTCCGTGATCTTTTCAAGAAGGCCAAGGAAAATGCTCC 63395680 Query 175470 ATGTATTGTCTTCATTGATGAGATTGATGCGGTGGGCAAGCAACGCAGCGCTGG--TGGT 175527 || ||||| || ||||||| |||||||| || || |||| | | |||| | | Sbjct 63395679 TTGCATTGTATTTGTTGATGAAATTGATGCTGTTGGGCGGCAAAGAGGGACTGGAATTGG 63395620 Query 175528 ATGCCAGCAAATGACGAGAGAGAACAAACAATTAATCAACTACTCACCGAGATGGATGGC 175587 | | || |||||| || || ||||| || | || |||||| | || || |||||||| Sbjct 63395619 AGG--AGGAAATGATGAAAGGGAACAGACCCTGAACCAACTATTGACTGAAATGGATGGT 63395562 Query 175588 TTTGACAATGAGACTGGCATTGTGGTTATTGCGGCCACTAATCGCGTGGATATCCTTGA 175646 || || | ||||| || | ||| ||||||| || ||||| | ||||| ||||| Sbjct 63395561 TTCGAAGGAAATACTGGTATAATAGTTGTTGCGGCAACCAATCGTGCAGATATTCTTGA 63395503 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 596546147357600