Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Solanum_20lycopersicum_20[refseq_20GCF_5F000188115.3_202014-10-16]
3,145 sequences; 823,786,402 total letters
Query= NC_020852.1
Length=186468
Score E
Sequences producing significant alignments: (Bits) Value
seq4 113 5e-20
seq7 104 3e-17
>seq4
Length=66470942
Score = 113 bits (124), Expect = 5e-20
Identities = 192/276 (70%), Gaps = 2/276 (1%)
Strand=Plus/Plus
Query 175315 CCAGGTACGGGAAAGACCCTCCTCGCCCGAGCCATCGCGGGTGAATCAAATGTCCCATTC 175374
|||||||| ||||||||||| | || |||| | || ||||| | ||| |||||
Sbjct 65981708 CCAGGTACTGGAAAGACCCTTTTAGCTAGAGCAGTAGCTGGTGAGGCTGGTGTGCCATTT 65981767
Query 175375 ATCCAGTGCTCTGCCGCAAACTTTGTGGAGATGTTTGTTGGTGTGGGTGCCAAAAGGGTT 175434
|| || | || || | ||||| ||| ||||||| |||||||| || || |||
Sbjct 65981768 TTCTCTTGTGCAGCGTCAGAGTTTGTTGAGTTGTTTGTGGGTGTGGGAGCTTCTAGAGTT 65981827
Query 175435 CGCGATCTCTTTGAAATCGC-CCGCGAAAATCAACCATGTATTGTCTTCATTGATGAGAT 175493
| ||| | ||||| | || | ||| | ||| |||||||| || |||||||||||
Sbjct 65981828 AGGGATTTGTTTGAGAAGGCGAAGTCTAAAGC-ACCTTGTATTGTGTTTATTGATGAGAT 65981886
Query 175494 TGATGCGGTGGGCAAGCAACGCAGCGCTGGTGGTATGCCAGCAAATGACGAGAGAGAACA 175553
|||||| ||||| | |||| | | || ||| | | |||||| ||||| || ||
Sbjct 65981887 TGATGCTGTGGGAAGGCAAAGAGGTGCAGGTCTTGGAGGTGGAAATGATGAGAGGGAGCA 65981946
Query 175554 AACAATTAATCAACTACTCACCGAGATGGATGGCTT 175589
|| |||||||| || | || || |||||||| ||
Sbjct 65981947 GACTATTAATCAGCTTTTGACTGAAATGGATGGGTT 65981982
Score = 89.7 bits (98), Expect = 6e-13
Identities = 154/224 (69%), Gaps = 0/224 (0%)
Strand=Plus/Plus
Query 75131 GACTATGATTTTGGTTACTTTGGTCTCAAAACCCTTGAGAAGAGCTATCTTCAACGGCTC 75190
|||| ||| | || |||||||||| ||||||||||||| | | || ||| | | |
Sbjct 50409106 GACTTTGACTATGATTACTTTGGTTTCAAAACCCTTGAAAGGTCTTACCTTTTAAAGATT 50409165
Query 75191 GATGGCATCCTCATGGAAACCCCACAGTACATGTTCATGCGGGTCGCAATCGGCATCCAC 75250
| || | | |||||| ||||| | ||| | ||| | || | | || ||||||
Sbjct 50409166 CAGGGAAAGATTGTGGAAAGGCCACAACATATGCTGATGAGAGTATCTGTTGGAATCCAC 50409225
Query 75251 GGGGAAGACATTGATTCTGTCTTGGAGACATACGACAAGATGTCCCAAGGTATGTTCATT 75310
|| || ||||| |||||| | ||||||| | |||||| ||| | ||||| |
Sbjct 50409226 AAAGAGGATATTGAATCTGTCATCAAGACATATCATTTGATGTCTCAACGCTGGTTCACT 50409285
Query 75311 CACGCAACACCAACCCTCTTCAATGCTGGTACACCAAGACCGCA 75354
|| ||| | ||||| || || |||||||| || ||||| || ||
Sbjct 50409286 CATGCATCTCCAACACTATTTAATGCTGGCACTCCAAGGCCTCA 50409329
>seq7
Length=68045021
Score = 104 bits (114), Expect = 3e-17
Identities = 277/419 (66%), Gaps = 6/419 (1%)
Strand=Plus/Minus
Query 175231 GAGATTGTGGATTTTCTCAAGCAACCCGAGAGATATTTTGGAAGTGGTGCCAAGATCCCC 175290
||| | || || ||| | ||| |||| ||||||| | || | || || || ||
Sbjct 63395918 GAGGTCGTAGAATTTTTGAAGAAACCTGAGAGATTTACTGCAGTAGGGGCTCGTATTCCA 63395859
Query 175291 CGAGGCGCCCTTCTCGCGGGTAAGCCAGGTACGGGAAAGACCCTCCTCGCCCGAGCCATC 175350
||| | ||||| | ||| || ||||| || || ||| | || || || ||
Sbjct 63395858 AAAGGTGTTCTTCTTGTTGGTCCTCCTGGTACTGGGAAAACCTTGCTAGCAAAGGCAATT 63395799
Query 175351 GCGGGTGAATCAAATGTCCCATTCATC-CAGTGCTCTGCCGCAAACTTTGTGGAGATGTT 175409
|| |||||| | ||| ||||| || || | || | || | || || ||||||||
Sbjct 63395798 GCTGGTGAAGCGGGTGTTCCATTTTTCTCAATT-TCAGGTTCAGAATTCGTTGAGATGTT 63395740
Query 175410 TGTTGGTGTGGGTGCCAAAAGGGTTCGCGATCTCTTTGAAATCGCCCGCGAAAATCAACC 175469
||||||||| || ||| | || || ||||| || | | ||| |||||| ||
Sbjct 63395739 TGTTGGTGTTGGAGCCTCTCGAGTCCGTGATCTTTTCAAGAAGGCCAAGGAAAATGCTCC 63395680
Query 175470 ATGTATTGTCTTCATTGATGAGATTGATGCGGTGGGCAAGCAACGCAGCGCTGG--TGGT 175527
|| ||||| || ||||||| |||||||| || || |||| | | |||| | |
Sbjct 63395679 TTGCATTGTATTTGTTGATGAAATTGATGCTGTTGGGCGGCAAAGAGGGACTGGAATTGG 63395620
Query 175528 ATGCCAGCAAATGACGAGAGAGAACAAACAATTAATCAACTACTCACCGAGATGGATGGC 175587
| | || |||||| || || ||||| || | || |||||| | || || ||||||||
Sbjct 63395619 AGG--AGGAAATGATGAAAGGGAACAGACCCTGAACCAACTATTGACTGAAATGGATGGT 63395562
Query 175588 TTTGACAATGAGACTGGCATTGTGGTTATTGCGGCCACTAATCGCGTGGATATCCTTGA 175646
|| || | ||||| || | ||| ||||||| || ||||| | ||||| |||||
Sbjct 63395561 TTCGAAGGAAATACTGGTATAATAGTTGTTGCGGCAACCAATCGTGCAGATATTCTTGA 63395503
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 596546147357600
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |