Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Solanum_20lycopersicum_20[refseq_20GCF_5F000188115.3_202014-10-16] 3,145 sequences; 823,786,402 total letters Query= NC_020855.1 Length=192497 Score E Sequences producing significant alignments: (Bits) Value seq3145 515 5e-141 seq2 309 4e-79 seq5 187 3e-42 seq11 152 6e-32 seq1 143 3e-29 seq12 98.7 1e-15 >seq3145 Length=155461 Score = 515 bits (570), Expect = 5e-141 Identities = 703/976 (72%), Gaps = 4/976 (0%) Strand=Plus/Plus Query 7891 GCTAAGTCTAATGGGAAGTTGTGTGCATTTCTTTCATGCATAACTTCCATACCTAAGTTT 7950 |||| ||||| |||||||| || ||||| | ||||||||||||||||||||| | ||| Sbjct 568 GCTAGGTCTAGAGGGAAGTTATGAGCATTACGTTCATGCATAACTTCCATACCAAGGTTA 627 Query 7951 GCTCTGTTTAATACGTCACCCCATGTAGGAATGATTTTACCATTAACATCAACAACTGAT 8010 || | ||| | | ||| |||| || ||| | ||| | | ||||| || ||| Sbjct 628 GCACGGTTGATGATATCAGCCCAAGTGTTAATTACACGACCCTGACTGTCAACTACAGAT 687 Query 8011 TGGTTAAAGTTAAATCCGTTAAGGTTAAATGCCATTGTGCAAATACCCATAGAAGTTAAC 8070 ||||| || || || || || ||||| || ||||| |||| ||||| | || || ||| Sbjct 688 TGGTTGAAATTGAAACCATTTAGGTTGAAAGCCATAGTGCTGATACCTAAAGCGGTAAAC 747 Query 8071 CAAACACATACAACTGGGAATGTAGCGAGGAAGAAGTGAAGACTTCTACTGTTGTT-AAA 8129 || | || ||| || || | | ||| ||||||||||| | | | |||||| ||| Sbjct 748 CAGATACCTACTACAGGCCAAGCAGCTAGGAAGAAGTGTAACGAACGAGAGTTGTTGAAA 807 Query 8130 CGATGCATACTGGAAGATTAATCTACCAAAGTATCCATGAGCAGCAACAATATTATAGGT 8189 | | ||||| |||||||| |||| ||||| || |||||||| || || |||||||| || Sbjct 808 CTA-GCATATTGGAAGATCAATCGGCCAAAATAACCATGAGCGGCTACGATATTATAAGT 866 Query 8190 CTCTTCTTCTTGACCAAACTTATAACCATAGTTCTGAGACTCTTCTTCAGTTGTCTCTCT 8249 ||||| |||||||| || | ||||| | || ||| || | ||| || || || || Sbjct 867 TTCTTCCTCTTGACCGAATCTGTAACCTTCATTAGCAGATTCATTTTCTGTGGTTTCCCT 926 Query 8250 GATTAGAGAAGATGTAACTAAAGAACCGTGCATAGCACTGAAGAGTGATCCACCGAACAT 8309 ||| | | ||| || || || ||||| |||||||||||||| || || || ||||| | Sbjct 927 GATCAAACTAGAAGTTACCAAGGAACCATGCATAGCACTGAATAGGGAGCCGCCGAATAC 986 Query 8310 ACCTGCTACCCCTGCCATATGGAAAGGATGCATAAGAATGTTATGCTCTGCTTGGAATAC 8369 || ||||| ||| ||| || || || |||||||| ||||| || || || |||||||| Sbjct 987 CCCAGCTACGCCTAACATGTGAAATGGGTGCATAAGGATGTTGTGTTCAGCCTGGAATAC 1046 Query 8370 GAACATGAAGTTAAACGTACCAGAAATACCTAGAGGCATTCCATCAGAGAATGAACCCTG 8429 | |||||| || || |||||||| || ||||||||||| |||||||| || || || Sbjct 1047 AATCATGAAATTGAAAGTACCAGAGATTCCTAGAGGCATACCATCAGAAAAACTTCCTTG 1106 Query 8430 ACCAAATGGATATACTAAGAACACTGCGAAAGCAGCAGATACTGGAGCACTATATGCTAC 8489 ||| | ||| || | ||||| |||||| |||||| | || ||||| |||||| || Sbjct 1107 ACCGATTGGGTAGATCAAGAAAACTGCGGTAGCAGCTGCAACAGGAGCTGAATATGCAAC 1166 Query 8490 ACAGATCCATGGTCTCATACCTAAGCGGTATGATAA-CTCCCACTGTCTACCCATGTAAG 8548 | ||||| |||| |||||| | ||| | | ||| |||||||| | |||||||||| Sbjct 1167 AGCAATCCAAGGTCGCATACCCAGACGG-AAGCTAAGCTCCCACTCACGACCCATGTAAC 1225 Query 8549 CAGAAATTCCAATAAGGAAGTGGAAGATAACCAACTGATATGGACCTCCGTTATACAACC 8608 || | |||| | |||||| | | || | | ||| ||||| ||||| || |||| Sbjct 1226 AAGCTACGCCAAGTAAGAAGTGTAGAACAATTAGTTCATAAGGACCACCGTTGTATAACC 1285 Query 8609 ACTCATCTAATGTGGCAGCTTCCCAAATGGGATAGAAGTGTAATCCAATAGCGTTGGAAG 8668 | ||||| | | || |||||||| || || || || ||||| || ||||| |||| Sbjct 1286 ATTCATCAACGGATGCCGCTTCCCAGATTGGGTAAAAATGTAAACCTATAGCTGCAGAAG 1345 Query 8669 ATGGAACGACAGCACCAGAGATGATGTTGTTTCCATACATGAATGAACCTGCAACAGGTT 8728 |||| | ||||| || || ||||||||||| || | | || |||| |||||||| Sbjct 1346 TAGGAATAATGGCACCGGAAATAATGTTGTTTCCGTAAAGTAGAGACCCTGAAACAGGTT 1405 Query 8729 CACGAATACCGTCGATATCGACAGGTGGAGCAGCAATAAATGCCACGATAAAGCAAGTAG 8788 |||||||||| || || || || || ||||||||||| || || | ||||| || || Sbjct 1406 CACGAATACCATCAATGTCTACTGGAGGAGCAGCAATGAAGGCAATAATAAATACAGAAG 1465 Query 8789 CAGCAGCTAACAAGCAAGGAATCATTAGAACTCCAAACCAACCGACATAAAGTCTGTTGT 8848 || | || ||| ||| ||||| | ||| |||||||| || | ||||| | ||| | Sbjct 1466 TTGCCGTCAATAAGGTAGGGATCATCAAAACACCAAACCATCCAATGTAAAGACGGTTTT 1525 Query 8849 TTGTACTTGTAACCCA 8864 || || || | ||| Sbjct 1526 CAGTGCTAGTTATCCA 1541 >seq2 Length=55340444 Score = 309 bits (342), Expect = 4e-79 Identities = 643/945 (68%), Gaps = 18/945 (2%) Strand=Plus/Plus Query 7891 GCTAAGTCTAATGGGAAGTTGTGTGCATTTCTTTCATGCATAACTTCCATACCTAAGTTT 7950 |||| ||||| |||||||| | ||||| | |||||||||||||| ||||| | ||| Sbjct 13823765 GCTAGGTCTAGAGGGAAGTTATTAGCATTCCGTTCATGCATAACTTTCATACTAAGGTTA 13823824 Query 7951 GCTCTGTTTAATACGTCACCCCATGTAGGAATGATTTTAC--CATTAAC-ATCAACAACT 8007 || | ||| | | ||| |||| || ||||| || || | || ||||| || Sbjct 13823825 GCACGGTTGATGATATCAGCCCAAGTGT---TGATTACACGACACTGACTATCAAGTACA 13823881 Query 8008 GATTGGTTAAAGTTAAATCCGTTAAGGTTAAATGCCATTGTGCAAATACCCATAGAAGTT 8067 |||||||| || || || | || ||||| || ||||| |||| ||||| | || || Sbjct 13823882 GATTGGTTGAAATTGAAACAATTTAGGTTGAAAGCCATAGTGCTGATACCTAAAGCGGTA 13823941 Query 8068 AACCAAACACATACAACTGGGAATGTAGCGAGGAAGAAGTGAAGACTTCTACTGTTGTT- 8126 ||||| | || || || || | || | ||||||||| | | | ||||| Sbjct 13823942 AACCAGATACCTAATACAGGCCTAGCGGCTAAGAAGAAGTGTAACGAACGAGATTTGTTG 13824001 Query 8127 AAACGATGCATACTGGAAGATTAATCTACCAAAGTATCCATGAGCAGCAACAATATTATA 8186 |||| | ||||| || ||||| ||| ||||| | |||||||| | ||||||||||| Sbjct 13824002 AAACTA-GCATATTGAAAGATCAATAGGCCAAAACAACCATGAGCGTCTACAATATTATA 13824060 Query 8187 GGTCTCTTCTTCTTGACCAAACTTATAACCATAGTTCTGAGACTCTTCTTCAGTTGTCTC 8246 || ||||| ||||||| || | |||| | || ||| || | ||| | || || Sbjct 13824061 AGTTTCTTCCTCTTGACTGAATCTTTAACATTTATTGGCAGATTCATTTTCTATGGTTTC 13824120 Query 8247 TCTGATTAGAGAAGATGTAACTAAAGAACCGTGCATAGCACTGAAGAGTGATCCACCGAA 8306 ||||| | | ||| || || || ||| | | | ||||| || ||||| || |||| Sbjct 13824121 CCTGATCAAACTAGAAGTTACAAAGTTACCATACGTGGCACTAAATAGTGAGCCGTCGAA 13824180 Query 8307 CATACCTGCTACCCCTGCCATATGGAAAGGATGCATAAGAATGTTATGCTCTGCTTGGAA 8366 | | ||||| ||| ||| || || || |||||||| ||||| | || || ||||| Sbjct 13824181 TACCCTAGCTACGCCTAACATGTGAAATGGGTGCATAAGGATGTTGTATTCGGCCTGGAA 13824240 Query 8367 TACGAACATGAAGTTAAACGTACCAGAAATACCTAGAGGCATTCCATCAGAGAATGAACC 8426 ||| | |||||| || || || | ||| || ||||||||||| |||||||| || | Sbjct 13824241 TACAATCATGAAATTGAAAGTGCAAGAGATTCCTAGAGGCATACCATCAGAAAAGTTTGC 13824300 Query 8427 CTGACCAAATGGATATACTAAGAACACTGCGAAAGCAGCAGAT---ACTGGAGCACTATA 8483 ||||| | ||| || | | ||| | || | | ||||||| || ||||| ||| Sbjct 13824301 TTGACCGATTGGGTAGATAAGGAAAATTGTG---GTAGCAGATCTAACAGGAGCTTAATA 13824357 Query 8484 TGCTACACAGATCCATGGTCTCATACCTAAGCGGTATGATAA-CTCCCACTGTCTACCCA 8542 ||| ||| ||||| ||||||||||||| ||| | | ||| |||||| | | |||| Sbjct 13824358 TGCAACAACAATCCAAGGTCTCATACCTAGACGG-AAGCTAAGCTCCCAATCACGACCCT 13824416 Query 8543 TGTAAGCAGAAATTCCAATAAGGAAGTGGAAGATAACCAACTGATATGGACCTCCGTTAT 8602 ||||| || | |||| || |||||| | | || | | ||| ||| |||| | Sbjct 13824417 TGTAACAGGATACGCCAAGAAAGAAGTGTAGAAAAATTAGTTCATAATAACCATCGTTGT 13824476 Query 8603 ACAACCACTCATCTAATGTGGCAGCTTCCCAAATGGGATAGAAGTGTAATCCAATAGCGT 8662 | ||||| |||| | | || || ||| |||| || || || ||||| || ||||| Sbjct 13824477 ATAACCATTCATAAATGGATGCCGCATCCTAAATTGGGTAAAAATGTAAACCTATAGCTG 13824536 Query 8663 TGGAAGATGGAACGACAGCACCAGAGATGATGTTGTTTCCATACATGAATGAACC-TGCA 8721 |||| |||| | ||||| || || ||||||||| | || | | | |||| || | Sbjct 13824537 CAGAAGTAGGAATAATCGCACCGGAAATAATGTTGTTTTCGTA-AAGTAGAAACCTTGAA 13824595 Query 8722 ACAGGTTCACGAATACCGTCGATATCGACAGGTGGAGCAGCAATAAATGCCACGATAAAG 8781 | ||||||||||||||| || || || | || |||| |||| || || | ||||| Sbjct 13824596 AAAGGTTCACGAATACCATCAATGTCTGCTGGACAAGCATCAATGAAGGCAATAATAAAT 13824655 Query 8782 CAAGTAGCAGCAGCTAACAAGCAAGGAATCATTAGAACTCCAAAC 8826 || || || | || ||| | | ||||| | ||| |||||| Sbjct 13824656 ACAGAAGTTGCCGTCAATAAGGTATGGATCATGAAAACCCCAAAC 13824700 >seq5 Length=65875088 Score = 187 bits (206), Expect = 3e-42 Identities = 284/402 (71%), Gaps = 2/402 (0%) Strand=Plus/Plus Query 8446 AAGAACACTGCGAAAGCAGCAGATACTGGAGCACTATATGCTACACAGATCCATGGTCTC 8505 ||||| |||||| |||||| | || ||||| |||||| ||| ||||| |||| | Sbjct 14606137 AAGAAAACTGCGGTAGCAGCTGCAACAGGAGCTGAATATGCAACAGCAATCCAAGGTCGC 14606196 Query 8506 ATACCTAAGCGGTATGATAA-CTCCCACTGTCTACCCATGTAAGCAGAAATTCCAATAAG 8564 ||||| | | | | | ||| |||||||| |||||||||| || | |||| | Sbjct 14606197 ATACCCAGACAGAA-GCTAAGCTCCCACTCATGACCCATGTAACAAGCTACGCCAAGTAA 14606255 Query 8565 GAAGTGGAAGATAACCAACTGATATGGACCTCCGTTATACAACCACTCATCTAATGTGGC 8624 ||||| | | || | | ||| ||||| ||||| || ||||| ||||| | || || Sbjct 14606256 TAAGTGTAGAACAATTAGTTCATAAGGACCACCGTTGTATAACCATTCATCAACTGATGC 14606315 Query 8625 AGCTTCCCAAATGGGATAGAAGTGTAATCCAATAGCGTTGGAAGATGGAACGACAGCACC 8684 |||||||| || || || || ||||| || ||||| |||| |||| | ||||| Sbjct 14606316 CGCTTCCCACATTGGGTAAAAATGTAAACCTATAGCTGCAGAAGTAGGAATAATGGCACC 14606375 Query 8685 AGAGATGATGTTGTTTCCATACATGAATGAACCTGCAACAGGTTCACGAATACCGTCGAT 8744 || || ||||||||||| || | | || |||| |||||||||||||||||| || || Sbjct 14606376 GGAAATAATGTTGTTTCCGTAAAGTAGAGACCCTGAAACAGGTTCACGAATACCATCAAT 14606435 Query 8745 ATCGACAGGTGGAGCAGCAATAAATGCCACGATAAAGCAAGTAGCAGCAGCTAACAAGCA 8804 || || || ||||||||||| || || | ||||| || || || | || ||| Sbjct 14606436 GTCTACTGGAGGAGCAGCAATGAAGGCAATAATAAATACAGAAGTTGCCGTCAATAAGGT 14606495 Query 8805 AGGAATCATTAGAACTCCAAACCAACCGACATAAAGTCTGTT 8846 ||| ||||| | ||| |||||||| || | ||||| | ||| Sbjct 14606496 AGGGATCATCAAAACACCAAACCATCCAATGTAAAGACAGTT 14606537 >seq11 Length=56302525 Score = 152 bits (168), Expect = 6e-32 Identities = 198/271 (73%), Gaps = 2/271 (1%) Strand=Plus/Plus Query 8121 GTTGTT-AAACGATGCATACTGGAAGATTAATCTACCAAAGTATCCATGAGCAGCAACAA 8179 |||||| |||| | ||||| |||||||| |||| ||||| || ||||| | || || | Sbjct 45374316 GTTGTTGAAACTA-GCATATTGGAAGATCAATCCGCCAAAATAAGCATGAACGGCTACGA 45374374 Query 8180 TATTATAGGTCTCTTCTTCTTGACCAAACTTATAACCATAGTTCTGAGACTCTTCTTCAG 8239 |||| || || ||||| |||||||| || | ||||| | || ||| || | ||| | Sbjct 45374375 TATTCTAAGTTTCTTCCTCTTGACCGAATCTGTAACCTTCATTAGCAGATTCATTTTCTG 45374434 Query 8240 TTGTCTCTCTGATTAGAGAAGATGTAACTAAAGAACCGTGCATAGCACTGAAGAGTGATC 8299 | | || ||||| | | |||||| || || ||| | |||||||||||||| || || | Sbjct 45374435 TGCTTTCCCTGATCAAACTAGATGTTACCAAGGAAGCATGCATAGCACTGAATAGGGAGC 45374494 Query 8300 CACCGAACATACCTGCTACCCCTGCCATATGGAAAGGATGCATAAGAATGTTATGCTCTG 8359 | || | ||| |||| ||| || || || || |||||||| ||||| ||||| | Sbjct 45374495 CGCCTTTTACACCAGCTAGGCCTAAGATGTGAAATGGGTGCATAAGGATGTTGTGCTCAG 45374554 Query 8360 CTTGGAATACGAACATGAAGTTAAACGTACC 8390 | |||||||| | |||||| || || ||||| Sbjct 45374555 CCTGGAATACAATCATGAAATTGAAAGTACC 45374585 Score = 105 bits (116), Expect = 8e-18 Identities = 118/158 (75%), Gaps = 0/158 (0%) Strand=Plus/Minus Query 8281 ATAGCACTGAAGAGTGATCCACCGAACATACCTGCTACCCCTGCCATATGGAAAGGATGC 8340 ||||||||||| || || || || || | | ||||| ||| |||||| || | ||| Sbjct 7156431 ATAGCACTGAATAGGGAGCCGCCAAATACCCTAGCTACGCCTAACATATGAAATGAGTGC 7156372 Query 8341 ATAAGAATGTTATGCTCTGCTTGGAATACGAACATGAAGTTAAACGTACCAGAAATACCT 8400 ||||| ||||| || || || |||||||| | |||||| || || |||||||| | ||| Sbjct 7156371 ATAAGGATGTTGTGTTCAGCCTGGAATACAATCATGAAATTGAAAGTACCAGAGACTCCT 7156312 Query 8401 AGAGGCATTCCATCAGAGAATGAACCCTGACCAAATGG 8438 |||||||| |||| ||| || || ||||| | ||| Sbjct 7156311 AGAGGCATACCATTAGAAAAACTTCCTTGACCGATTGG 7156274 >seq1 Length=98543444 Score = 143 bits (158), Expect = 3e-29 Identities = 190/261 (73%), Gaps = 2/261 (1%) Strand=Plus/Minus Query 8288 TGAAGAGTGATCCACCGAACATACCTGCTACCCCTGCCATATGGAAAGGATGCATAAGAA 8347 |||| || || || ||||| | || ||||| ||| ||| || || || |||||||| | Sbjct 45009711 TGAATAGGGAGCCGCCGAATACCCCAGCTACGCCTAACATGTGAAATGGGTGCATAAGGA 45009652 Query 8348 TGTTATGCTCTGCTTGGAATACGAACATGAAGTTAAACGTACCAGAAATACCTAGAGGCA 8407 | || || || || |||||||| | |||||| || | |||| ||| || |||||||||| Sbjct 45009651 TCTTGTGTTCAGCCTGGAATACAATCATGAAATTGGAAGTACTAGAGATTCCTAGAGGCA 45009592 Query 8408 TTCCATCAGAGAATGAACCCTGACCAAATGGATATACTAAGAACACTGCGAAAGCAGCAG 8467 | |||||| | || || ||||| | ||| | | ||||| |||||| |||||| | Sbjct 45009591 TACCATCATAAAAACTTCCTTGACCGATTGGGTGGATCAAGAAAACTGCGGTAGCAGCTG 45009532 Query 8468 ATACTGGAGCACTATATGCTACACAGATCCATGGTCTCATACCTAAGCGGTATGATAA-C 8526 || ||||| |||||| ||| ||||| |||| |||||| ||| | | | ||| | Sbjct 45009531 CAACAGGAGCTGAATATGCAACAGCAATCCAAGGTCGCATACC-AAGACGGAAGCTAAGC 45009473 Query 8527 TCCCACTGTCTACCCATGTAA 8547 ||||||| | |||||||||| Sbjct 45009472 TCCCACTCACGACCCATGTAA 45009452 >seq12 Length=67145203 Score = 98.7 bits (108), Expect = 1e-15 Identities = 135/186 (73%), Gaps = 2/186 (1%) Strand=Plus/Plus Query 8386 GTACCAGAAATACCTAGAGGCATTCCATCAGAGAATGAACCCTGACCAAATGGATATACT 8445 |||||||| || ||||||||||| |||||||| || || ||||| | ||| || | Sbjct 45738268 GTACCAGAGATTCCTAGAGGCATACCATCAGAAAAACTTCCTTGACCGATTGGGTAGATC 45738327 Query 8446 AAGAACACTGCGAAAGCAGCAGATACTGGAGCACTATATGCTACACAGATCCATGGTCTC 8505 ||||| |||||| |||||| || ||||| |||||| ||| ||||| |||| | Sbjct 45738328 AAGAAAACTGCGGTAGCAGCTACAACAGGAGCTGAATATGCAACAGCAATCCAAGGTCGC 45738387 Query 8506 ATACCTAAGCGGTATGATAA-CTCCCACTGTCTACCCATGTAAGCAGAAATTCCAATAAG 8564 ||||| | ||| | | ||| |||||||| |||||||||| || | ||||| | Sbjct 45738388 ATACCCAGACGG-AAGCTAAGCTCCCACTCATGACCCATGTAACAAGCTACGCCAATTAA 45738446 Query 8565 GAAGTG 8570 |||||| Sbjct 45738447 GAAGTG 45738452 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 615838188909400