Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Solanum_20lycopersicum_20[refseq_20GCF_5F000188115.3_202014-10-16] 3,145 sequences; 823,786,402 total letters Query= NC_020874.1 Length=46198 Score E Sequences producing significant alignments: (Bits) Value seq3145 499 9e-137 seq2 260 4e-65 seq5 172 2e-38 seq1 149 2e-31 seq11 111 5e-20 seq3 98.7 3e-16 seq12 96.9 1e-15 >seq3145 Length=155461 Score = 499 bits (552), Expect = 9e-137 Identities = 707/986 (72%), Gaps = 6/986 (1%) Strand=Plus/Plus Query 25877 GCTAAGTCAAGTGGAAAGTTATGAGCATTACGCTCGTGCATAACTTCAAAGCCGAGGTTA 25936 |||| ||| || || ||||||||||||||||| || ||||||||||| | || |||||| Sbjct 568 GCTAGGTCTAGAGGGAAGTTATGAGCATTACGTTCATGCATAACTTCCATACCAAGGTTA 627 Query 25937 GCTCGGTTTAATACATCAGCCCATGTAGGTATTATCTTTCCATTAACATCTACTACTGAC 25996 || ||||| | | ||||||||| || |||| || | | || ||||| || Sbjct 628 GCACGGTTGATGATATCAGCCCAAGTGTTAATTACACGACCCTGACTGTCAACTACAGAT 687 Query 25997 TGGTTAAAGTTAAAACCATTTAGGTTAAATGCCATTGTGCAGATACCCATAGATGTCAGC 26056 ||||| || || |||||||||||||| || ||||| |||| |||||| | || || | | Sbjct 688 TGGTTGAAATTGAAACCATTTAGGTTGAAAGCCATAGTGCTGATACCTAAAGCGGTAAAC 747 Query 26057 CATATGCCAACAACCGGCCAAGTAGCAAGAAAGAAATGAAGAGAACGGCTGTTATTAAAA 26116 || || || || || ||||||| ||| || ||||| || | ||||| ||| || ||| Sbjct 748 CAGATACCTACTACAGGCCAAGCAGCTAGGAAGAAGTGTAACGAACGAGAGTTGTTGAAA 807 Query 26117 CTCGCATACTGAAAAATTAATCTCCCAAAGTACCCGTGTGCAGCGACAATATTATATGTC 26176 || ||||| || || || |||| ||||| || || || || || || |||||||| || Sbjct 808 CTAGCATATTGGAAGATCAATCGGCCAAAATAACCATGAGCGGCTACGATATTATAAGTT 867 Query 26177 TCTTCATCTTGCCCAAACTTATAGCCATAATTCTGTGAGACTTCCTCTGTCGTTTCTGCA 26236 ||||| ||||| || || | || || | ||| || | | ||||| ||||| Sbjct 868 TCTTCCTCTTGACCGAATCTGTAACCTTCATTAGCAGATTCATTTTCTGTGGTTTCCCTG 927 Query 26237 ATAAGTGAGGAAGTAACCAAACTTCCGTGCATAGCAGCGAAAAGAGCTCCACCGAAAACC 26296 || | ||||| ||||| || ||||||||| ||| || | || ||||| ||| Sbjct 928 ATCAAACTAGAAGTTACCAAGGAACCATGCATAGCACTGAATAGGGAGCCGCCGAATACC 987 Query 26297 CCAGCAACACCAGCCATATGGAATGGGTGCATGAGTATATTATGTTCTGCTTGGAATACG 26356 ||||| || || ||| || ||||||||||| || || || ||||| || |||||||| Sbjct 988 CCAGCTACGCCTAACATGTGAAATGGGTGCATAAGGATGTTGTGTTCAGCCTGGAATACA 1047 Query 26357 AACATAAAGTTAAAAGTACCAGAGATACCAAGAGGCATTCCATCACTAAAACTCCCTTGT 26416 | ||| || || |||||||||||||| || |||||||| |||||| |||||| ||||| Sbjct 1048 ATCATGAAATTGAAAGTACCAGAGATTCCTAGAGGCATACCATCAGAAAAACTTCCTTGA 1107 Query 26417 CCGAAAGGATAAACTAAGAACACTGCGAGAGCTGCGGATAGTGGTGCTGTATATGCAACA 26476 |||| || || | ||||| |||||| ||| || | | || |||| |||||||||| Sbjct 1108 CCGATTGGGTAGATCAAGAAAACTGCGGTAGCAGCTGCAACAGGAGCTGAATATGCAACA 1167 Query 26477 AATATCCATGGTCTCATTCCTAGTCTGTAAGAT-AGTTCCCACTGTCTCCCTGCATATGC 26535 ||||| |||| ||| || || | | ||| | || ||||||| | || || Sbjct 1168 GCAATCCAAGGTCGCATACCCAGAC-GGAAGCTAAGCTCCCACTCACGACCCATGTAACA 1226 Query 26536 TGCTACTCCTATTAAGAAGTGGAAGATAATGAGTTGATATGGTCCGCCATTGTATAGCCA 26595 ||||| || | ||||||||| | | ||| |||| ||| || || || ||||||| ||| Sbjct 1227 AGCTACGCCAAGTAAGAAGTGTAGAACAATTAGTTCATAAGGACCACCGTTGTATAACCA 1286 Query 26596 CTCGTCCA-GTGTGCCAGCTTCCCAGATCGGGTAAAAATGTAGTCCGATTGCGTTAGAGG 26654 || || | | |||| ||||||||||| ||||||||||||| || || || ||| | Sbjct 1287 TTCATCAACGGATGCC-GCTTCCCAGATTGGGTAAAAATGTAAACCTATAGCTGCAGAAG 1345 Query 26655 AGGGGACGACTGCTCCTGATATTATATTGTTTCCGTACATTAACGAGCCGGAAACTGGCT 26714 || | | || || || || || ||||||||||| | || || || ||||| || | Sbjct 1346 TAGGAATAATGGCACCGGAAATAATGTTGTTTCCGTAAAGTAGAGACCCTGAAACAGGTT 1405 Query 26715 CACGTATGCCATCTATATCTACAGGCGGTGCTGCGATGAAGGCAAGTATAAA-ACATGTA 26773 |||| || ||||| || ||||| || || || || |||||||||| ||||| ||| | | Sbjct 1406 CACGAATACCATCAATGTCTACTGGAGGAGCAGCAATGAAGGCAATAATAAATACA-GAA 1464 Query 26774 GTGGCTGCGAGTAAGCAGGGTATCATAAGCACCCCGAACCATCCCACATAGAGACGGTTC 26833 || || | | |||| || ||||| | || || |||||||| | || |||||||| Sbjct 1465 GTTGCCGTCAATAAGGTAGGGATCATCAAAACACCAAACCATCCAATGTAAAGACGGTTT 1524 Query 26834 TCAGTACTTGTAACCCACTCACAAAA 26859 ||||| || || | ||| | ||| || Sbjct 1525 TCAGTGCTAGTTATCCAGTTACAGAA 1550 >seq2 Length=55340444 Score = 260 bits (288), Expect = 4e-65 Identities = 640/960 (67%), Gaps = 8/960 (1%) Strand=Plus/Plus Query 25877 GCTAAGTCAAGTGGAAAGTTATGAGCATTACGCTCGTGCATAACTTCAAAGCCGAGGTTA 25936 |||| ||| || || ||||||| |||||| || || |||||||||| | | |||||| Sbjct 13823765 GCTAGGTCTAGAGGGAAGTTATTAGCATTCCGTTCATGCATAACTTTCATACTAAGGTTA 13823824 Query 25937 GCTCGGTTTAATACATCAGCCCATGTAGGTATTATCTTTCCATTAAC-ATCTACTACTGA 25995 || ||||| | | ||||||||| || |||| | || | || ||| | ||| || Sbjct 13823825 GCACGGTTGATGATATCAGCCCAAGTGTTGATTA-CACGACACTGACTATCAAGTACAGA 13823883 Query 25996 CTGGTTAAAGTTAAAACCATTTAGGTTAAATGCCATTGTGCAGATACCCATAGATGTCAG 26055 ||||| || || |||| ||||||||| || ||||| |||| |||||| | || || | Sbjct 13823884 TTGGTTGAAATTGAAACAATTTAGGTTGAAAGCCATAGTGCTGATACCTAAAGCGGTAAA 13823943 Query 26056 CCATATGCCAACAACCGGCCAAGTAGCAAGAAAGAAATGAAGAGAACGGCTGTTATTAAA 26115 ||| || || | || |||| || || | ||||| || | ||||| || || || Sbjct 13823944 CCAGATACCTAATACAGGCCTAGCGGCTAAGAAGAAGTGTAACGAACGAGATTTGTTGAA 13824003 Query 26116 ACTCGCATACTGAAAAATTAATCTCCCAAAGTACCCGTGTGCAGCGACAATATTATATGT 26175 ||| ||||| ||||| || ||| ||||| | || || || | ||||||||||| || Sbjct 13824004 ACTAGCATATTGAAAGATCAATAGGCCAAAACAACCATGAGCGTCTACAATATTATAAGT 13824063 Query 26176 CTCTTCATCTTGCCCAAACTTATAGCCATAATTCTGTGAGACTTCCTCTGTCGTTTCTGC 26235 ||||| ||||| | || | || | | ||| || | | ||| | ||||| Sbjct 13824064 TTCTTCCTCTTGACTGAATCTTTAACATTTATTGGCAGATTCATTTTCTATGGTTTCCCT 13824123 Query 26236 AATAAGTGAGGAAGTAACCAAACTTCCGTGCATAGCAGCGAAAAGAGCTCCACCGAAAAC 26295 || | ||||| || || | || | | | ||| || || | || |||| || Sbjct 13824124 GATCAAACTAGAAGTTACAAAGTTACCATACGTGGCACTAAATAGTGAGCCGTCGAATAC 13824183 Query 26296 CCCAGCAACACCAGCCATATGGAATGGGTGCATGAGTATATTATGTTCTGCTTGGAATAC 26355 || ||| || || ||| || ||||||||||| || || || | ||| || |||||||| Sbjct 13824184 CCTAGCTACGCCTAACATGTGAAATGGGTGCATAAGGATGTTGTATTCGGCCTGGAATAC 13824243 Query 26356 GAACATAAAGTTAAAAGTACCAGAGATACCAAGAGGCATTCCATCACTAAAACTCCCTTG 26415 | ||| || || ||||| | |||||| || |||||||| |||||| ||| | |||| Sbjct 13824244 AATCATGAAATTGAAAGTGCAAGAGATTCCTAGAGGCATACCATCAGAAAAGTTTGCTTG 13824303 Query 26416 TCCGAAAGGATAAACTAAGAACACTGCGAGAGCTGCGGATAGTGGTGCTGTATATGCAAC 26475 |||| || || | | ||| | || | ||| | | || ||| ||||||||| Sbjct 13824304 ACCGATTGGGTAGATAAGGAAAATTGTGGTAGCAGATCTAACAGGAGCTTAATATGCAAC 13824363 Query 26476 AAATATCCATGGTCTCATTCCTAGTCTGTAAGAT-AGTTCCCACTGTCTCCCTGCATATG 26534 || ||||| |||||||| ||||| | | ||| | || ||||| | | || || Sbjct 13824364 AACAATCCAAGGTCTCATACCTAGAC-GGAAGCTAAGCTCCCAATCACGACCCTTGTAAC 13824422 Query 26535 CTGCTACTCCTATTAAGAAGTGGAAGATAATGAGTTGATATGGTCCGCCATTGTATAGCC 26594 | ||| || | |||||||| | | ||| |||| ||| || | ||||||| || Sbjct 13824423 AGGATACGCCAAGAAAGAAGTGTAGAAAAATTAGTTCATAATAACCATCGTTGTATAACC 13824482 Query 26595 ACTCGTCCA-GTGTGCCAGCTTCCCAGATCGGGTAAAAATGTAGTCCGATTGCGTTAGAG 26653 | || | | | |||| || ||| | || ||||||||||||| || || || ||| Sbjct 13824483 ATTCATAAATGGATGCC-GCATCCTAAATTGGGTAAAAATGTAAACCTATAGCTGCAGAA 13824541 Query 26654 GAGGGGACGACTGCTCCTGATATTATATTGTTTCCGTACATTAACGAGCCGGAAACTGGC 26713 | || | | || || || || || |||||| |||| | || | | |||| || Sbjct 13824542 GTAGGAATAATCGCACCGGAAATAATGTTGTTTTCGTAAAGTAGAAACCTTGAAAAAGGT 13824601 Query 26714 TCACGTATGCCATCTATATCTACAGGCGGTGCTGCGATGAAGGCAAGTATAAA-ACATGT 26772 ||||| || ||||| || ||| | || || | |||||||||| ||||| ||| | Sbjct 13824602 TCACGAATACCATCAATGTCTGCTGGACAAGCATCAATGAAGGCAATAATAAATACA-GA 13824660 Query 26773 AGTGGCTGCGAGTAAGCAGGGTATCATAAGCACCCCGAACCATCCCACATAGAGACGGTT 26832 ||| || | | |||| | ||||| | ||||| ||| ||| | || |||| ||| Sbjct 13824661 AGTTGCCGTCAATAAGGTATGGATCATGAAAACCCCAAACAATCAAATGTAAAGACAGTT 13824720 Score = 100 bits (110), Expect = 8e-17 Identities = 124/170 (73%), Gaps = 0/170 (0%) Strand=Plus/Plus Query 25910 TCGTGCATAACTTCAAAGCCGAGGTTAGCTCGGTTTAATACATCAGCCCATGTAGGTATT 25969 || ||||||||||| | || |||||||| ||||| | | ||||||||| || ||| Sbjct 22404922 TCTTGCATAACTTCCATACCAAGGTTAGCACGGTTGATGATATCAGCCCAAGTGTTAATT 22404981 Query 25970 ATCTTTCCATTAACATCTACTACTGACTGGTTAAAGTTAAAACCATTTAGGTTAAATGCC 26029 | || | | || ||||| || ||||| || || |||||||||||||| || ||| Sbjct 22404982 ACACGACCCTGACTGTCAACTACAGATTGGTTGAAATTGAAACCATTTAGGTTGAAAGCC 22405041 Query 26030 ATTGTGCAGATACCCATAGATGTCAGCCATATGCCAACAACCGGCCAAGT 26079 || |||| |||||| | || || | ||| || || || || |||||||| Sbjct 22405042 ATAGTGCTGATACCTAAAGCGGTAAACCAGATACCTACTACAGGCCAAGT 22405091 >seq5 Length=65875088 Score = 172 bits (190), Expect = 2e-38 Identities = 294/415 (71%), Gaps = 10/415 (2%) Strand=Plus/Plus Query 26432 AAGAACACTGCGAGAGCTGCGGATAGTGGTGCTGTATATGCAACAAATATCCATGGTCTC 26491 ||||| |||||| ||| || | | || |||| |||||||||| ||||| |||| | Sbjct 14606137 AAGAAAACTGCGGTAGCAGCTGCAACAGGAGCTGAATATGCAACAGCAATCCAAGGTCGC 14606196 Query 26492 ATTCCTAGTCTGTAAGATA-GTTCCCACTG-TCTCCC-TGCATATGCTGCTACTCCTATT 26548 || || || | | ||| || | ||||||| | ||| || || ||||| || | | Sbjct 14606197 ATACCCAGACAG-AAGCTAAGCTCCCACTCATGACCCATG--TAACAAGCTACGCCAAGT 14606253 Query 26549 AAGAAGTGGAAGATAATGAGTTGATATGGTCCGCCATTGTATAGCCACTCGTCCAGTG-T 26607 || ||||| | | ||| |||| ||| || || || ||||||| ||| || || | || | Sbjct 14606254 AATAAGTGTAGAACAATTAGTTCATAAGGACCACCGTTGTATAACCATTCATCAACTGAT 14606313 Query 26608 GCCAGCTTCCCAGATCGGGTAAAAATGTAGTCCGATTGCGTTAGAGGAGGGGACGACTGC 26667 ||| |||||||| || ||||||||||||| || || || ||| | || | | || Sbjct 14606314 GCC-GCTTCCCACATTGGGTAAAAATGTAAACCTATAGCTGCAGAAGTAGGAATAATGGC 14606372 Query 26668 TCCTGATATTATATTGTTTCCGTACATTAACGAGCCGGAAACTGGCTCACGTATGCCATC 26727 || || || || ||||||||||| | || || || ||||| || ||||| || ||||| Sbjct 14606373 ACCGGAAATAATGTTGTTTCCGTAAAGTAGAGACCCTGAAACAGGTTCACGAATACCATC 14606432 Query 26728 TATATCTACAGGCGGTGCTGCGATGAAGGCAAGTATAAA-ACATGTAGTGGCTGCGAGTA 26786 || ||||| || || || || |||||||||| ||||| ||| | ||| || | | || Sbjct 14606433 AATGTCTACTGGAGGAGCAGCAATGAAGGCAATAATAAATACA-GAAGTTGCCGTCAATA 14606491 Query 26787 AGCAGGGTATCATAAGCACCCCGAACCATCCCACATAGAGACGGTTCTCAGTACT 26841 || || ||||| | || || |||||||| | || |||| ||| ||||| || Sbjct 14606492 AGGTAGGGATCATCAAAACACCAAACCATCCAATGTAAAGACAGTTTTCAGTGCT 14606546 >seq1 Length=98543444 Score = 149 bits (164), Expect = 2e-31 Identities = 176/236 (75%), Gaps = 2/236 (1%) Strand=Plus/Minus Query 26285 CCACCGAAAACCCCAGCAACACCAGCCATATGGAATGGGTGCATGAGTATATTATGTTCT 26344 || ||||| |||||||| || || ||| || ||||||||||| || || || ||||| Sbjct 45009700 CCGCCGAATACCCCAGCTACGCCTAACATGTGAAATGGGTGCATAAGGATCTTGTGTTCA 45009641 Query 26345 GCTTGGAATACGAACATAAAGTTAAAAGTACCAGAGATACCAAGAGGCATTCCATCACTA 26404 || |||||||| | ||| || || |||||| |||||| || |||||||| |||||| | Sbjct 45009640 GCCTGGAATACAATCATGAAATTGGAAGTACTAGAGATTCCTAGAGGCATACCATCATAA 45009581 Query 26405 AAACTCCCTTGTCCGAAAGGATAAACTAAGAACACTGCGAGAGCTGCGGATAGTGGTGCT 26464 ||||| ||||| |||| || | | ||||| |||||| ||| || | | || ||| Sbjct 45009580 AAACTTCCTTGACCGATTGGGTGGATCAAGAAAACTGCGGTAGCAGCTGCAACAGGAGCT 45009521 Query 26465 GTATATGCAACAAATATCCATGGTCTCATTCCTAGTCTGTAAGAT-AGTTCCCACT 26519 | |||||||||| ||||| |||| ||| || || | | ||| | || ||||||| Sbjct 45009520 GAATATGCAACAGCAATCCAAGGTCGCATACCAAGAC-GGAAGCTAAGCTCCCACT 45009466 Score = 95.1 bits (104), Expect = 4e-15 Identities = 131/180 (73%), Gaps = 4/180 (2%) Strand=Plus/Minus Query 25906 ACGCTCGTGCATAACTTCAAAGCCGAGGTTAGCTCGGTTTAATACATCAGCCCATGTAGG 25965 ||| || ||||||||||| | || ||| |||| ||||| | | ||| ||||| || | Sbjct 88349404 ACGTTCATGCATAACTTCCATACCAAGGCTAGCACGGTTGATGATATCGGCCCAAGT-GT 88349346 Query 25966 TATTATCTTTCCATTAAC-ATCTACTACTGACTGGTTAAAGTTAAAACCATTTAGGTTAA 26024 || | | | || | || ||| ||||| || ||||| || || |||||||| ||||| | Sbjct 88349345 TAATTACATGACACTGACTATCAACTACAGATTGGTTGAAATTGAAACCATTCAGGTTGA 88349286 Query 26025 ATGCCATTGTGCAGATACCCATAGATGTCAGCC--ATATGCCAACAACCGGCCAAGTAGC 26082 | ||||| |||| |||||| | || || | || |||| || || || ||||||| ||| Sbjct 88349285 AAGCCATAGTGCTGATACCTAAAGCGGTAAACCAGATATACCTACTACAGGCCAAGCAGC 88349226 >seq11 Length=56302525 Score = 111 bits (122), Expect = 5e-20 Identities = 117/154 (76%), Gaps = 0/154 (0%) Strand=Plus/Minus Query 26267 ATAGCAGCGAAAAGAGCTCCACCGAAAACCCCAGCAACACCAGCCATATGGAATGGGTGC 26326 |||||| ||| || | || || || |||| ||| || || |||||| |||| |||| Sbjct 7156431 ATAGCACTGAATAGGGAGCCGCCAAATACCCTAGCTACGCCTAACATATGAAATGAGTGC 7156372 Query 26327 ATGAGTATATTATGTTCTGCTTGGAATACGAACATAAAGTTAAAAGTACCAGAGATACCA 26386 || || || || ||||| || |||||||| | ||| || || ||||||||||||| || Sbjct 7156371 ATAAGGATGTTGTGTTCAGCCTGGAATACAATCATGAAATTGAAAGTACCAGAGACTCCT 7156312 Query 26387 AGAGGCATTCCATCACTAAAACTCCCTTGTCCGA 26420 |||||||| |||| | |||||| ||||| |||| Sbjct 7156311 AGAGGCATACCATTAGAAAAACTTCCTTGACCGA 7156278 >seq3 Length=70787664 Score = 98.7 bits (108), Expect = 3e-16 Identities = 121/164 (74%), Gaps = 1/164 (1%) Strand=Plus/Plus Query 25881 AGTCAAGTGGAAAGTTATGAGCATTACGCTCGTGCATAACTTCAAAGCCGAGGTTAGCTC 25940 |||| || || |||||||||||||| || || ||||||| ||| | || |||||||| | Sbjct 48907112 AGTCTAGAGGGAAGTTATGAGCATTGCGTTCATGCATAAATTCCATACCAAGGTTAGCAC 48907171 Query 25941 GGTTTAATACATCAGCCCATGTAGGTA-TTATCTTTCCATTAACATCTACTACTGACTGG 25999 |||| | | ||||||||| || | ||| || | | || |||| || ||| Sbjct 48907172 GGTTGATGATATCAGCCCAAGTTTTAATTTACACGACCCTGACTGTCAACTATAGATTGG 48907231 Query 26000 TTAAAGTTAAAACCATTTAGGTTAAATGCCATTGTGCAGATACC 26043 || || || |||||||||||||| || ||||| |||| |||||| Sbjct 48907232 TTGAAATTGAAACCATTTAGGTTGAAAGCCATAGTGCTGATACC 48907275 >seq12 Length=67145203 Score = 96.9 bits (106), Expect = 1e-15 Identities = 139/190 (73%), Gaps = 6/190 (3%) Strand=Plus/Plus Query 26370 AAGTACCAGAGATACCAAGAGGCATTCCATCACTAAAACTCCCTTGTCCGAAAGGATAAA 26429 ||||||||||||| || |||||||| |||||| |||||| ||||| |||| || || | Sbjct 45738266 AAGTACCAGAGATTCCTAGAGGCATACCATCAGAAAAACTTCCTTGACCGATTGGGTAGA 45738325 Query 26430 CTAAGAACACTGCGAGAGCTGCGGATAGTGGTGCTGTATATGCAACAAATATCCATGGTC 26489 ||||| |||||| ||| || | || |||| |||||||||| ||||| |||| Sbjct 45738326 TCAAGAAAACTGCGGTAGCAGCTACAACAGGAGCTGAATATGCAACAGCAATCCAAGGTC 45738385 Query 26490 TCATTCCTAGTCTGTAAGAT-AGTTCCCACT-GTCTCCC-TGCATATGCTGCTACTCCTA 26546 ||| || || | | ||| | || ||||||| | ||| || || ||||| || | Sbjct 45738386 GCATACCCAGAC-GGAAGCTAAGCTCCCACTCATGACCCATG--TAACAAGCTACGCCAA 45738442 Query 26547 TTAAGAAGTG 26556 |||||||||| Sbjct 45738443 TTAAGAAGTG 45738452 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 147706483418400