Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Solanum_20lycopersicum_20[refseq_20GCF_5F000188115.3_202014-10-16] 3,145 sequences; 823,786,402 total letters Query= NC_021246.1 Length=281182 Score E Sequences producing significant alignments: (Bits) Value seq11 147 4e-30 seq1 102 1e-16 seq10 98.7 2e-15 seq4 84.2 4e-11 >seq11 Length=56302525 Score = 147 bits (162), Expect = 4e-30 Identities = 174/236 (74%), Gaps = 0/236 (0%) Strand=Plus/Minus Query 193125 ATTTATATACCACCTCTCAATCGAAGTACCAGATGCAATGTAGCCTCTTTAGAAATATTA 193184 |||| || ||||| |||| |||||| || ||||| || |||| |||||| |||||| Sbjct 497024 ATTTGCATGCCACCCCTCAGTCGAAGAACAAGATGTAAGGTAGACTCTTTCTGAATATTG 496965 Query 193185 TAGTCGGATAACGTTCTAGAATCGTCTAATTGTTTTCCGGCAAAAATTAATCTCTGTTGA 193244 ||||| | | || || ||| || | ||| || |||||||| || | |||||| || Sbjct 496964 TAGTCAGCCAGGGTCCTTCCATCCTCAAGTTGCTTGCCGGCAAAGATCAGTCTCTGCTGG 496905 Query 193245 TCAGGAGGTATTCCTTCTTTATCTTGTATTTTGGTTTTTATATTTAAAATAGTATCGGAA 193304 || ||||| || ||||| ||||| || ||||||| || | ||| ||||||||||||| Sbjct 496904 TCTGGAGGAATCCCTTCCTTATCCTGAATTTTGGCCTTCACATTGTCAATAGTATCGGAA 496845 Query 193305 GACTCAACTTCTAGAGTTATAGTTTTACCTGTTAGCGTTTTTACAAATATTTGCAT 193360 |||||||| || || || || || || || || || || ||||| || ||||| Sbjct 496844 CTTTCAACTTCAAGGGTGATGGTCTTTCCAGTAAGTGTCTTGACAAAGATCTGCAT 496789 Score = 129 bits (142), Expect = 1e-24 Identities = 170/236 (72%), Gaps = 0/236 (0%) Strand=Plus/Minus Query 193125 ATTTATATACCACCTCTCAATCGAAGTACCAGATGCAATGTAGCCTCTTTAGAAATATTA 193184 |||| || |||||||| | ||||| || || |||| || | ||||| ||| || Sbjct 497252 ATTTGCATGCCACCTCTAAGGCGAAGAACAAGGTGCAGGGTTGATTCTTTCTGAATGTTG 497193 Query 193185 TAGTCGGATAACGTTCTAGAATCGTCTAATTGTTTTCCGGCAAAAATTAATCTCTGTTGA 193244 || || | ||||| || ||| || | ||| ||||| ||||| || |||||||| || Sbjct 497192 TAATCTGCCAACGTCCTTCCATCCTCAAGTTGCTTTCCAGCAAAGATCAATCTCTGCTGG 497133 Query 193245 TCAGGAGGTATTCCTTCTTTATCTTGTATTTTGGTTTTTATATTTAAAATAGTATCGGAA 193304 || ||||| || || || || |||||||| || | ||| | ||| |||||||| ||| Sbjct 497132 TCTGGAGGAATACCCTCCTTGTCTTGTATCTTTGCTTTAACATTGTCGATAGTATCTGAA 497073 Query 193305 GACTCAACTTCTAGAGTTATAGTTTTACCTGTTAGCGTTTTTACAAATATTTGCAT 193360 |||||| || | ||| || || || ||||| | || || |||||||||||||| Sbjct 497072 CTCTCAACCTCCAAAGTAATTGTCTTCCCTGTCAATGTCTTGACAAATATTTGCAT 497017 Score = 87.8 bits (96), Expect = 3e-12 Identities = 107/146 (73%), Gaps = 0/146 (0%) Strand=Plus/Minus Query 193215 TGTTTTCCGGCAAAAATTAATCTCTGTTGATCAGGAGGTATTCCTTCTTTATCTTGTATT 193274 ||||| || ||||| || | ||||| || || || || || ||||| || ||||| ||| Sbjct 496706 TGTTTCCCAGCAAAGATCAGCCTCTGCTGGTCTGGGGGAATACCTTCCTTGTCTTGAATT 496647 Query 193275 TTGGTTTTTATATTTAAAATAGTATCGGAAGACTCAACTTCTAGAGTTATAGTTTTACCT 193334 || | ||| | ||| || || || || ||| || || ||||||||||| || || Sbjct 496646 TTAGCTTTGACATTATCGATGGTGTCTGAGCTCTCGACCTCAAGAGTTATAGTCTTTCCG 496587 Query 193335 GTTAGCGTTTTTACAAATATTTGCAT 193360 || || ||||| ||||| |||||||| Sbjct 496586 GTCAGAGTTTTAACAAAGATTTGCAT 496561 >seq1 Length=98543444 Score = 102 bits (112), Expect = 1e-16 Identities = 161/231 (70%), Gaps = 0/231 (0%) Strand=Plus/Minus Query 193133 ACCACCTCTCAATCGAAGTACCAGATGCAATGTAGCCTCTTTAGAAATATTATAGTCGGA 193192 |||||| | | || || || ||||| | || | ||| || || || ||||||| Sbjct 57604335 ACCACCACGGAGACGGAGCACGAGATGGAGAGTGGACTCCTTCTGGATGTTGTAGTCGGC 57604276 Query 193193 TAACGTTCTAGAATCGTCTAATTGTTTTCCGGCAAAAATTAATCTCTGTTGATCAGGAGG 193252 | || | | ||| || | || |||||||| ||||| || | ||| || || || || Sbjct 57604275 AAGAGTACGACCATCCTCAAGCTGCTTTCCGGCGAAAATCAAACGCTGCTGGTCTGGGGG 57604216 Query 193253 TATTCCTTCTTTATCTTGTATTTTGGTTTTTATATTTAAAATAGTATCGGAAGACTCAAC 193312 || ||||| || || || || |||| ||| | ||| || || |||||||||||||| Sbjct 57604215 AATCCCTTCCTTGTCCTGGATCTTGGCTTTCACATTGTCGATGGTGTCGGAAGACTCAAC 57604156 Query 193313 TTCTAGAGTTATAGTTTTACCTGTTAGCGTTTTTACAAATATTTGCATTTT 193363 ||||| || || || || || ||||| ||||| || || || ||||| || Sbjct 57604155 CTCTAGGGTGATCGTCTTCCCCGTTAGGGTTTTCACGAAGATCTGCATCTT 57604105 >seq10 Length=65527505 Score = 98.7 bits (108), Expect = 2e-15 Identities = 147/209 (70%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 193152 ACCAGATGCAATGTAGCCTCTTTAGAAATATTATAGTCGGATAACGTTCTAGAATCGTCT 193211 || ||||| | ||||| ||| || |||||| || || | | || | ||| | Sbjct 65066522 ACAAGATGAATTGTAGACTCCTTTTGAATATTGTAATCAGCAAGTGTATGATCATCCTTA 65066581 Query 193212 AATTGTTTTCCGGCAAAAATTAATCTCTGTTGATCAGGAGGTATTCCTTCTTTATCTTGT 193271 ||||||||||| |||| | |||||| |||||||| | || ||||||||||| |||| Sbjct 65066582 AATTGTTTTCCACCAAATACTAATCTTTGTTGATCTGAGGGAATTCCTTCTTTGTCTTCA 65066641 Query 193272 ATTTTGGTTTTTATATTTAAAATAGTATCGGAAGACTCAACTTCTAGAGTTATAGTTTTA 193331 || || | ||| | ||| ||| || | |||| || || || ||||| || || || Sbjct 65066642 ATCTTTGCTTTAACATTGTTAATGGTGTTGGAACTCTTCACATCCAGAGTAATGGTCTTT 65066701 Query 193332 CCTGTTAGCGTTTTTACAAATATTTGCAT 193360 || | || ||||| ||||| |||||||| Sbjct 65066702 CCAATGAGAGTTTTAACAAAGATTTGCAT 65066730 Score = 89.7 bits (98), Expect = 9e-13 Identities = 64/74 (86%), Gaps = 0/74 (0%) Strand=Plus/Plus Query 193197 GTTCTAGAATCGTCTAATTGTTTTCCGGCAAAAATTAATCTCTGTTGATCAGGAGGTATT 193256 |||||| ||| || ||||||||||| |||||||| | |||||| |||||||||||||| Sbjct 463864 GTTCTACCATCTTCCAATTGTTTTCCAGCAAAAATCAGTCTCTGCTGATCAGGAGGTATG 463923 Query 193257 CCTTCTTTATCTTG 193270 ||||||||||| || Sbjct 463924 CCTTCTTTATCCTG 463937 >seq4 Length=66470942 Score = 84.2 bits (92), Expect = 4e-11 Identities = 107/145 (74%), Gaps = 2/145 (1%) Strand=Plus/Minus Query 193215 TGTTTTCCGGCAAAAATTAATCTCTGTTGATCAGGAGGTATTCCTTCTTTATCTTGTATT 193274 || || || |||||||| | || || || || ||||| ||||||||||| |||||||| Sbjct 46321550 TGCTTACCAGCAAAAATCAGCCTTTGCTGGTCTGGAGGGATTCCTTCTTTGTCTTGTATC 46321491 Query 193275 TTGGTTTTTATATTTAAAATAGTATCGGAAGACTCAACTTCTAGAGTTATAGTTTTACCT 193334 |||| || ||| ||||||| | | || ||||| ||||| || |||||| || Sbjct 46321490 TTGGCCTTAGCATTGTCGATAGTATTGCTGAATTCGACTTCCAGAGTAATGGTTTTA-CT 46321432 Query 193335 GTTAGCGTTTTTACAAATAT-TTGC 193358 | ||| ||||| || ||||| |||| Sbjct 46321431 GGTAGAGTTTTCACGAATATCTTGC 46321407 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 899619032336400