Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Solanum_20lycopersicum_20[refseq_20GCF_5F000188115.3_202014-10-16]
3,145 sequences; 823,786,402 total letters
Query= NC_021246.1
Length=281182
Score E
Sequences producing significant alignments: (Bits) Value
seq11 147 4e-30
seq1 102 1e-16
seq10 98.7 2e-15
seq4 84.2 4e-11
>seq11
Length=56302525
Score = 147 bits (162), Expect = 4e-30
Identities = 174/236 (74%), Gaps = 0/236 (0%)
Strand=Plus/Minus
Query 193125 ATTTATATACCACCTCTCAATCGAAGTACCAGATGCAATGTAGCCTCTTTAGAAATATTA 193184
|||| || ||||| |||| |||||| || ||||| || |||| |||||| ||||||
Sbjct 497024 ATTTGCATGCCACCCCTCAGTCGAAGAACAAGATGTAAGGTAGACTCTTTCTGAATATTG 496965
Query 193185 TAGTCGGATAACGTTCTAGAATCGTCTAATTGTTTTCCGGCAAAAATTAATCTCTGTTGA 193244
||||| | | || || ||| || | ||| || |||||||| || | |||||| ||
Sbjct 496964 TAGTCAGCCAGGGTCCTTCCATCCTCAAGTTGCTTGCCGGCAAAGATCAGTCTCTGCTGG 496905
Query 193245 TCAGGAGGTATTCCTTCTTTATCTTGTATTTTGGTTTTTATATTTAAAATAGTATCGGAA 193304
|| ||||| || ||||| ||||| || ||||||| || | ||| |||||||||||||
Sbjct 496904 TCTGGAGGAATCCCTTCCTTATCCTGAATTTTGGCCTTCACATTGTCAATAGTATCGGAA 496845
Query 193305 GACTCAACTTCTAGAGTTATAGTTTTACCTGTTAGCGTTTTTACAAATATTTGCAT 193360
|||||||| || || || || || || || || || || ||||| || |||||
Sbjct 496844 CTTTCAACTTCAAGGGTGATGGTCTTTCCAGTAAGTGTCTTGACAAAGATCTGCAT 496789
Score = 129 bits (142), Expect = 1e-24
Identities = 170/236 (72%), Gaps = 0/236 (0%)
Strand=Plus/Minus
Query 193125 ATTTATATACCACCTCTCAATCGAAGTACCAGATGCAATGTAGCCTCTTTAGAAATATTA 193184
|||| || |||||||| | ||||| || || |||| || | ||||| ||| ||
Sbjct 497252 ATTTGCATGCCACCTCTAAGGCGAAGAACAAGGTGCAGGGTTGATTCTTTCTGAATGTTG 497193
Query 193185 TAGTCGGATAACGTTCTAGAATCGTCTAATTGTTTTCCGGCAAAAATTAATCTCTGTTGA 193244
|| || | ||||| || ||| || | ||| ||||| ||||| || |||||||| ||
Sbjct 497192 TAATCTGCCAACGTCCTTCCATCCTCAAGTTGCTTTCCAGCAAAGATCAATCTCTGCTGG 497133
Query 193245 TCAGGAGGTATTCCTTCTTTATCTTGTATTTTGGTTTTTATATTTAAAATAGTATCGGAA 193304
|| ||||| || || || || |||||||| || | ||| | ||| |||||||| |||
Sbjct 497132 TCTGGAGGAATACCCTCCTTGTCTTGTATCTTTGCTTTAACATTGTCGATAGTATCTGAA 497073
Query 193305 GACTCAACTTCTAGAGTTATAGTTTTACCTGTTAGCGTTTTTACAAATATTTGCAT 193360
|||||| || | ||| || || || ||||| | || || ||||||||||||||
Sbjct 497072 CTCTCAACCTCCAAAGTAATTGTCTTCCCTGTCAATGTCTTGACAAATATTTGCAT 497017
Score = 87.8 bits (96), Expect = 3e-12
Identities = 107/146 (73%), Gaps = 0/146 (0%)
Strand=Plus/Minus
Query 193215 TGTTTTCCGGCAAAAATTAATCTCTGTTGATCAGGAGGTATTCCTTCTTTATCTTGTATT 193274
||||| || ||||| || | ||||| || || || || || ||||| || ||||| |||
Sbjct 496706 TGTTTCCCAGCAAAGATCAGCCTCTGCTGGTCTGGGGGAATACCTTCCTTGTCTTGAATT 496647
Query 193275 TTGGTTTTTATATTTAAAATAGTATCGGAAGACTCAACTTCTAGAGTTATAGTTTTACCT 193334
|| | ||| | ||| || || || || ||| || || ||||||||||| || ||
Sbjct 496646 TTAGCTTTGACATTATCGATGGTGTCTGAGCTCTCGACCTCAAGAGTTATAGTCTTTCCG 496587
Query 193335 GTTAGCGTTTTTACAAATATTTGCAT 193360
|| || ||||| ||||| ||||||||
Sbjct 496586 GTCAGAGTTTTAACAAAGATTTGCAT 496561
>seq1
Length=98543444
Score = 102 bits (112), Expect = 1e-16
Identities = 161/231 (70%), Gaps = 0/231 (0%)
Strand=Plus/Minus
Query 193133 ACCACCTCTCAATCGAAGTACCAGATGCAATGTAGCCTCTTTAGAAATATTATAGTCGGA 193192
|||||| | | || || || ||||| | || | ||| || || || |||||||
Sbjct 57604335 ACCACCACGGAGACGGAGCACGAGATGGAGAGTGGACTCCTTCTGGATGTTGTAGTCGGC 57604276
Query 193193 TAACGTTCTAGAATCGTCTAATTGTTTTCCGGCAAAAATTAATCTCTGTTGATCAGGAGG 193252
| || | | ||| || | || |||||||| ||||| || | ||| || || || ||
Sbjct 57604275 AAGAGTACGACCATCCTCAAGCTGCTTTCCGGCGAAAATCAAACGCTGCTGGTCTGGGGG 57604216
Query 193253 TATTCCTTCTTTATCTTGTATTTTGGTTTTTATATTTAAAATAGTATCGGAAGACTCAAC 193312
|| ||||| || || || || |||| ||| | ||| || || ||||||||||||||
Sbjct 57604215 AATCCCTTCCTTGTCCTGGATCTTGGCTTTCACATTGTCGATGGTGTCGGAAGACTCAAC 57604156
Query 193313 TTCTAGAGTTATAGTTTTACCTGTTAGCGTTTTTACAAATATTTGCATTTT 193363
||||| || || || || || ||||| ||||| || || || ||||| ||
Sbjct 57604155 CTCTAGGGTGATCGTCTTCCCCGTTAGGGTTTTCACGAAGATCTGCATCTT 57604105
>seq10
Length=65527505
Score = 98.7 bits (108), Expect = 2e-15
Identities = 147/209 (70%), Gaps = 0/209 (0%)
Strand=Plus/Plus
Query 193152 ACCAGATGCAATGTAGCCTCTTTAGAAATATTATAGTCGGATAACGTTCTAGAATCGTCT 193211
|| ||||| | ||||| ||| || |||||| || || | | || | ||| |
Sbjct 65066522 ACAAGATGAATTGTAGACTCCTTTTGAATATTGTAATCAGCAAGTGTATGATCATCCTTA 65066581
Query 193212 AATTGTTTTCCGGCAAAAATTAATCTCTGTTGATCAGGAGGTATTCCTTCTTTATCTTGT 193271
||||||||||| |||| | |||||| |||||||| | || ||||||||||| ||||
Sbjct 65066582 AATTGTTTTCCACCAAATACTAATCTTTGTTGATCTGAGGGAATTCCTTCTTTGTCTTCA 65066641
Query 193272 ATTTTGGTTTTTATATTTAAAATAGTATCGGAAGACTCAACTTCTAGAGTTATAGTTTTA 193331
|| || | ||| | ||| ||| || | |||| || || || ||||| || || ||
Sbjct 65066642 ATCTTTGCTTTAACATTGTTAATGGTGTTGGAACTCTTCACATCCAGAGTAATGGTCTTT 65066701
Query 193332 CCTGTTAGCGTTTTTACAAATATTTGCAT 193360
|| | || ||||| ||||| ||||||||
Sbjct 65066702 CCAATGAGAGTTTTAACAAAGATTTGCAT 65066730
Score = 89.7 bits (98), Expect = 9e-13
Identities = 64/74 (86%), Gaps = 0/74 (0%)
Strand=Plus/Plus
Query 193197 GTTCTAGAATCGTCTAATTGTTTTCCGGCAAAAATTAATCTCTGTTGATCAGGAGGTATT 193256
|||||| ||| || ||||||||||| |||||||| | |||||| ||||||||||||||
Sbjct 463864 GTTCTACCATCTTCCAATTGTTTTCCAGCAAAAATCAGTCTCTGCTGATCAGGAGGTATG 463923
Query 193257 CCTTCTTTATCTTG 193270
||||||||||| ||
Sbjct 463924 CCTTCTTTATCCTG 463937
>seq4
Length=66470942
Score = 84.2 bits (92), Expect = 4e-11
Identities = 107/145 (74%), Gaps = 2/145 (1%)
Strand=Plus/Minus
Query 193215 TGTTTTCCGGCAAAAATTAATCTCTGTTGATCAGGAGGTATTCCTTCTTTATCTTGTATT 193274
|| || || |||||||| | || || || || ||||| ||||||||||| ||||||||
Sbjct 46321550 TGCTTACCAGCAAAAATCAGCCTTTGCTGGTCTGGAGGGATTCCTTCTTTGTCTTGTATC 46321491
Query 193275 TTGGTTTTTATATTTAAAATAGTATCGGAAGACTCAACTTCTAGAGTTATAGTTTTACCT 193334
|||| || ||| ||||||| | | || ||||| ||||| || |||||| ||
Sbjct 46321490 TTGGCCTTAGCATTGTCGATAGTATTGCTGAATTCGACTTCCAGAGTAATGGTTTTA-CT 46321432
Query 193335 GTTAGCGTTTTTACAAATAT-TTGC 193358
| ||| ||||| || ||||| ||||
Sbjct 46321431 GGTAGAGTTTTCACGAATATCTTGC 46321407
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 899619032336400
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |