Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Solanum_20lycopersicum_20[refseq_20GCF_5F000188115.3_202014-10-16]
3,145 sequences; 823,786,402 total letters
Query= NC_021247.1
Length=228750
Score E
Sequences producing significant alignments: (Bits) Value
seq11 104 3e-17
seq2 98.7 1e-15
seq12 91.5 2e-13
seq10 91.5 2e-13
>seq11
Length=56302525
Score = 104 bits (114), Expect = 3e-17
Identities = 132/182 (73%), Gaps = 0/182 (0%)
Strand=Plus/Plus
Query 155823 ATGCAAATATTTATTAAAACATTGACTGGAAAAACTATTACATTAGAAGTCGAAGATTCT 155882
|||||||||||| | || |||||||| || || || ||||| || || || || |||
Sbjct 497017 ATGCAAATATTTGTCAAGACATTGACAGGGAAGACAATTACTTTGGAGGTTGAGAGTTCA 497076
Query 155883 GATAATATTTTAAACGTGAAAAATAAAATACAAGATAAAGAAGGCATACCTCCAGAACAA 155942
|||| ||| || || ||| || |||||||| || || || || |||||||| ||
Sbjct 497077 GATACTATCGACAATGTTAAAGCAAAGATACAAGACAAGGAGGGTATTCCTCCAGACCAG 497136
Query 155943 CAAAGATTGATTTATGCCGGTAAGCAGCTCGAAGATACCAGAACTTTATCAGATTATAAT 156002
|| |||||||| | ||| || ||||| || || ||| || || || ||||||| ||
Sbjct 497137 CAGAGATTGATCTTTGCTGGAAAGCAACTTGAGGATGGAAGGACGTTGGCAGATTACAAC 497196
Query 156003 AT 156004
||
Sbjct 497197 AT 497198
Score = 93.3 bits (102), Expect = 6e-14
Identities = 143/204 (70%), Gaps = 0/204 (0%)
Strand=Plus/Plus
Query 155823 ATGCAAATATTTATTAAAACATTGACTGGAAAAACTATTACATTAGAAGTCGAAGATTCT 155882
||||| || ||| | || || | ||||| || || || ||||| || || || |||
Sbjct 497701 ATGCAGATCTTTGTGAAGACTCTTACTGGGAAGACAATCACATTGGAGGTGGAGAGCTCT 497760
Query 155883 GATAATATTTTAAACGTGAAAAATAAAATACAAGATAAAGAAGGCATACCTCCAGAACAA 155942
|||| |||| || |||||| || ||||| || || ||||| || || ||||| |||
Sbjct 497761 GATACTATTGACAATGTGAAAGCAAAGATACAGGACAAGGAAGGGATCCCACCAGATCAA 497820
Query 155943 CAAAGATTGATTTATGCCGGTAAGCAGCTCGAAGATACCAGAACTTTATCAGATTATAAT 156002
|| || | || | ||| ||||||||||| || ||| | | || | |||| |||||
Sbjct 497821 CAGAGGCTCATCTTTGCTGGTAAGCAGCTTGAGGATGGCCGCACCCTTGCAGACTATAAC 497880
Query 156003 ATATCCAAAGAGGCGACGCTTCAT 156026
|| |||||| | || ||||||
Sbjct 497881 ATCCAGAAAGAGTCTACTCTTCAT 497904
>seq2
Length=55340444
Score = 98.7 bits (108), Expect = 1e-15
Identities = 354/552 (64%), Gaps = 7/552 (1%)
Strand=Plus/Minus
Query 18155 AAACACGCAAAATCAGTGTGTAAACCTTCATCTCTGGATATTAATTCGTTACTAAACGTT 18214
||||||||||||||| ||| |||||||| ||||| || ||||| || || || |||
Sbjct 54781790 AAACACGCAAAATCACAGTGCAAACCTTCGTCTCTTGAAATTAACTCATTTGAGAAGGTT 54781731
Query 18215 AACCCGGGCATTATACCTCttttttttAGCCAAAATATCGATGCGAAACTACTAGAAAAG 18274
|| || ||||||| || | |||||| | |||||||||||| ||| || | |||
Sbjct 54781730 AATCCAGGCATTAACCCCCGTTTTTTCAACCAAAATATCGAACAGAAGCTTCCGCTGAAG 54781671
Query 18275 AATATACCCTCAACGCACGCGAACGCTATTAATCTTTCAGCAAAACTGTATTTATTGCTC 18334
|| || || ||||| || || || || | || | || || ||| ||| | |
Sbjct 54781670 AAAATCCCTTCAACACAAGCAAAAGCCACCAAACGCTCCGCGAAA----GTTTCGGACCC 54781615
Query 18335 A-GTATCCATTTTTGTGCCCA-TTCTCCTTNNNNNNNNATACACGGTATACTCTCTATAG 18392
| ||||| | ||||| ||| |||| | ||| || || |||| || |
Sbjct 54781614 ATCGATCCAACGAAGGGCCCATTTCGCCTT-CTTTTCAACACAAGGGATTGTCTCAATTG 54781556
Query 18393 CATTAAACAAATCATCTTTTTCTTTGGAATCTTTTATATAAGTGTCGATTAACAAAGAAT 18452
|| ||||| | ||||| | ||||| || || || | || | | |||| |
Sbjct 54781555 CACGGAACAATTTGCTCTTTTCGTCAGAATCCTTGATGTACGACTCCAACAGCAAACTGT 54781496
Query 18453 ACATTTCAGAATGTATGCTTTCCATAGCTATCTGAAAACTATAAAACGATCTAGCCTCGG 18512
|||| || ||||| || | || || || || || || | ||| || | | ||||||||
Sbjct 54781495 ACATCTCGGAATGGATATTCTCAATGGCGATTTGGAACCCATAGAAAGCACGAGCCTCGG 54781436
Query 18513 GATATTGAATCTCGCTATAAAATCTTTCTACCAAATTCTCATTAACTATACCGTCAGCAG 18572
| || | || | || ||| | | | ||||| ||| || ||||| | |
Sbjct 54781435 CAACCTGGACATCTTTCATGAACCTTCCAGCGAGGTTCTCTAAAACGATGCCGTCTGAGG 54781376
Query 18573 ATGCGAAAAATGCCAAAACATATTTAATGAAATGTTTTTCATTATCCTTGAGATTGTTCC 18632
|| ||||| || | ||||| | |||||||| ||||| | || || | ||
Sbjct 54781375 CGGCAAAAAAGGCAAGAACATGAGTGATGAAATGCCTTTCACCGGATGTTAGGTTTTCCC 54781316
Query 18633 ATTCATCTATATCTTTTGATAGATCAACTTCTTCCGATGTCCAAAAAGATGATTCGGCCT 18692
| | | |||| | || ||||| |||||||| | ||||| ||||||| ||| |
Sbjct 54781315 AGTGACGAGTATCGGTGGAGAGATCGACTTCTTCTGCCGTCCAGAAAGATGCCATGGCTT 54781256
Query 18693 GTTTGTACATTT 18704
||||||||||
Sbjct 54781255 TCTTGTACATTT 54781244
>seq12
Length=67145203
Score = 91.5 bits (100), Expect = 2e-13
Identities = 131/185 (71%), Gaps = 0/185 (0%)
Strand=Plus/Minus
Query 155820 AAAATGCAAATATTTATTAAAACATTGACTGGAAAAACTATTACATTAGAAGTCGAAGAT 155879
|||||||| || ||| | || || |||| || || || ||||| || || || ||
Sbjct 66287370 AAAATGCAGATCTTTGTGAAGACCCTGACGGGCAAGACCATTACCTTGGAGGTAGAGTCA 66287311
Query 155880 TCTGATAATATTTTAAACGTGAAAAATAAAATACAAGATAAAGAAGGCATACCTCCAGAA 155939
|| || | ||| || || || ||| || ||||| || |||||||| || |||||
Sbjct 66287310 TCAGACACCATTGACAATGTTAAGGCTAAGATTCAAGACAAGGAAGGCATTCCACCAGAC 66287251
Query 155940 CAACAAAGATTGATTTATGCCGGTAAGCAGCTCGAAGATACCAGAACTTTATCAGATTAT 155999
|| || ||||||||| ||||||||||||||||| ||| | |||| || | || ||
Sbjct 66287250 CAGCAGCGATTGATTTTCGCCGGTAAGCAGCTCGAGGATGGCCGAACGCTAGCTGACTAC 66287191
Query 156000 AATAT 156004
|| ||
Sbjct 66287190 AACAT 66287186
>seq10
Length=65527505
Score = 91.5 bits (100), Expect = 2e-13
Identities = 146/210 (70%), Gaps = 0/210 (0%)
Strand=Plus/Minus
Query 155822 AATGCAAATATTTATTAAAACATTGACTGGAAAAACTATTACATTAGAAGTCGAAGATTC 155881
||||||||| ||| | || || ||||||||||| || || || | || || ||| ||
Sbjct 1072264 AATGCAAATTTTTGTGAAGACTTTGACTGGAAAGACCATCACCCTTGAGGTTGAAAGCTC 1072205
Query 155882 TGATAATATTTTAAACGTGAAAAATAAAATACAAGATAAAGAAGGCATACCTCCAGAACA 155941
|| | ||| || || || ||| || ||||| || |||||||| || ||||| ||
Sbjct 1072204 CGACACCATTGACAATGTTAAGGCTAAGATCCAAGACAAGGAAGGCATTCCCCCAGACCA 1072145
Query 155942 ACAAAGATTGATTTATGCCGGTAAGCAGCTCGAAGATACCAGAACTTTATCAGATTATAA 156001
||||| ||||| | ||| || |||||||| || || ||| || | | ||||| ||
Sbjct 1072144 GCAAAGGTTGATCTTTGCGGGCAAGCAGCTTGAGGACGGCAGGACCCTTGCTGATTACAA 1072085
Query 156002 TATATCCAAAGAGGCGACGCTTCATTTAGT 156031
|| || ||| | || ||||| || ||
Sbjct 1072084 CATCCAGAAGGAGTCAACCCTTCACTTGGT 1072055
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 731843228282000
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |