Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Solanum_20lycopersicum_20[refseq_20GCF_5F000188115.3_202014-10-16]
3,145 sequences; 823,786,402 total letters
Query= NC_021248.1
Length=307691
Score E
Sequences producing significant alignments: (Bits) Value
seq11 127 4e-24
seq10 107 4e-18
seq1 95.1 2e-14
seq12 93.3 8e-14
seq4 86.0 1e-11
>seq11
Length=56302525
Score = 127 bits (140), Expect = 4e-24
Identities = 166/230 (72%), Gaps = 0/230 (0%)
Strand=Plus/Minus
Query 192307 ATACCACCTCTAAGACGTAATACTAAATGTAAAGTAGCCTCTTTAGAGATATTATAATCA 192366
|| ||||| | ||||| | || | ||| | |||| |||||| ||| || ||||||
Sbjct 496562 ATCCCACCACGTAGACGGAGGACAAGATGAAGGGTAGACTCTTTTTGGATGTTGTAATCA 496503
Query 192367 GATAATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCTCTGTTGATCAGGT 192426
| | |||||| |||| || | ||||| ||||||||||| | |||||| ||||| ||
Sbjct 496502 GCAAGTGTTCGGCCATCTTCAAGCTGTTTCCCAGCAAAGATCAGTCTCTGCTGATCTGGA 496443
Query 192427 GGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGAATCTGACGATTCT 192486
|| || ||||| || ||||| || ||| ||| |||||| || | || || ||
Sbjct 496442 GGAATGCCTTCCTTGTCTTGAATCTTAGCTTTGACATTATCAATGGTGTCAGAACTCTCA 496383
Query 192487 ACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATAAATATCTGCAT 192536
|| || ||||| ||||| || || || | ||| |||| ||||||||||||
Sbjct 496382 ACCTCAAGAGTGATGGTCTTTCCGGTGAGTGTCTTAACAAATATCTGCAT 496333
Score = 104 bits (114), Expect = 5e-17
Identities = 161/230 (70%), Gaps = 0/230 (0%)
Strand=Plus/Minus
Query 192307 ATACCACCTCTAAGACGTAATACTAAATGTAAAGTAGCCTCTTTAGAGATATTATAATCA 192366
|||||||| | ||| || | || | || | || | ||| || ||| || ||||||
Sbjct 496790 ATACCACCACGAAGGCGAAGGACAAGGTGAAGGGTGGACTCCTTTTGGATGTTGTAATCA 496731
Query 192367 GATAATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCTCTGTTGATCAGGT 192426
| | |||||| |||| || | ||||| ||||||||||| | ||||| || || ||
Sbjct 496730 GCAAGTGTTCGGCCATCTTCAAGCTGTTTCCCAGCAAAGATCAGCCTCTGCTGGTCTGGG 496671
Query 192427 GGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGAATCTGACGATTCT 192486
|| || ||||| || ||||| |||||| ||| |||||| || | ||||| ||
Sbjct 496670 GGAATACCTTCCTTGTCTTGAATTTTAGCTTTGACATTATCGATGGTGTCTGAGCTCTCG 496611
Query 192487 ACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATAAATATCTGCAT 192536
|| || ||||| || || || || || | ||||||| ||| || |||||
Sbjct 496610 ACCTCAAGAGTTATAGTCTTTCCGGTCAGAGTTTTAACAAAGATTTGCAT 496561
Score = 104 bits (114), Expect = 5e-17
Identities = 161/230 (70%), Gaps = 0/230 (0%)
Strand=Plus/Minus
Query 192307 ATACCACCTCTAAGACGTAATACTAAATGTAAAGTAGCCTCTTTAGAGATATTATAATCA 192366
|| ||||||||||| || | || | || | || | ||||| || || |||||
Sbjct 497246 ATGCCACCTCTAAGGCGAAGAACAAGGTGCAGGGTTGATTCTTTCTGAATGTTGTAATCT 497187
Query 192367 GATAATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCTCTGTTGATCAGGT 192426
| || || | | |||| || | ||| || ||||||||||| |||||||| || || ||
Sbjct 497186 GCCAACGTCCTTCCATCCTCAAGTTGCTTTCCAGCAAAGATCAATCTCTGCTGGTCTGGA 497127
Query 192427 GGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGAATCTGACGATTCT 192486
|| || || || || |||||||| || ||| ||||| |||| |||||| ||
Sbjct 497126 GGAATACCCTCCTTGTCTTGTATCTTTGCTTTAACATTGTCGATAGTATCTGAACTCTCA 497067
Query 192487 ACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATAAATATCTGCAT 192536
|| || | |||||| || || || || ||||| || | |||||| |||||
Sbjct 497066 ACCTCCAAAGTAATTGTCTTCCCTGTCAATGTCTTGACAAATATTTGCAT 497017
Score = 98.7 bits (108), Expect = 2e-15
Identities = 133/184 (72%), Gaps = 1/184 (1%)
Strand=Plus/Plus
Query 192354 GATATTATAATCAGATAATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCT 192413
||| || ||||||| | |||| | |||| || | ||||| ||||||||||| | ||
Sbjct 487544 GATGTTGTAATCAGCAACTGTTTGGCCATCTTCAAGCTGTTTCCCAGCAAAGATCAGCCT 487603
Query 192414 CTGTTGATCAGGTGGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGA 192473
||| ||||| || || || ||||| || ||||| || ||| |||||||||| |||
Sbjct 487604 CTGCTGATCTGGAGGAATGCCTTCCTTGTCTTGAATCTTAGCTTTTACATTATCACTAGT 487663
Query 192474 ATCTGACGATTCTACTTCTAGAGTAATGGTTTTACCAGTTAATGT-TTTAATAAATATCT 192532
|| || || || || ||||| ||||| || || || | || || || ||||||||
Sbjct 487664 GTCAGAGCTCTCGACCTCAAGAGTGATGGTCTTTCCGGTGAGCGTCTTAAACAAATATCT 487723
Query 192533 GCAT 192536
||||
Sbjct 487724 GCAT 487727
Score = 93.3 bits (102), Expect = 8e-14
Identities = 143/204 (70%), Gaps = 0/204 (0%)
Strand=Plus/Minus
Query 192333 ATGTAAAGTAGCCTCTTTAGAGATATTATAATCAGATAATGTTCGTTCATCATCCAATTG 192392
||| | ||||| |||||| ||| ||||| || | | || || |||| || | ||
Sbjct 497904 ATGAAGAGTAGACTCTTTCTGGATGTTATAGTCTGCAAGGGTGCGGCCATCCTCAAGCTG 497845
Query 192393 TTTACCAGCAAAGATTAATCTCTGTTGATCAGGTGGTATTCCTTCTTTATCTTGTATTTT 192452
|||||||||||||| | ||||||||||| ||||| || ||||| || || ||||| ||
Sbjct 497844 CTTACCAGCAAAGATGAGCCTCTGTTGATCTGGTGGGATCCCTTCCTTGTCCTGTATCTT 497785
Query 192453 ATTTTTTACATTAGTTATAGAATCTGACGATTCTACTTCTAGAGTAATGGTTTTACCAGT 192512
||| ||||| |||| ||| || || || || | || || || || |||||
Sbjct 497784 TGCTTTCACATTGTCAATAGTATCAGAGCTCTCCACCTCCAATGTGATTGTCTTCCCAGT 497725
Query 192513 TAATGTTTTAATAAATATCTGCAT 192536
| || || | ||| ||||||||
Sbjct 497724 AAGAGTCTTCACAAAGATCTGCAT 497701
Score = 86.0 bits (94), Expect = 1e-11
Identities = 157/230 (68%), Gaps = 0/230 (0%)
Strand=Plus/Minus
Query 192307 ATACCACCTCTAAGACGTAATACTAAATGTAAAGTAGCCTCTTTAGAGATATTATAATCA 192366
|| || ||||| | ||| || || | ||| | ||| | ||| || ||| || || ||
Sbjct 497702 ATCCCTCCTCTCAAACGCAACACCAGATGGAGAGTTGACTCCTTCTGGATGTTGTAGTCT 497643
Query 192367 GATAATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCTCTGTTGATCAGGT 192426
| | || | |||| || | |||||||||||||||||| || | |||||| || ||
Sbjct 497642 GCAAGAGTCCTCCCATCCTCAAGTTGTTTACCAGCAAAGATCAAACGCTGTTGGTCTGGG 497583
Query 192427 GGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGAATCTGACGATTCT 192486
|| || || || || ||||| || || ||| ||||| || | |||||| ||
Sbjct 497582 GGAATACCCTCCTTGTCTTGAATCTTTGCTTTCACATTGTCAATGGTATCTGAACTCTCA 497523
Query 192487 ACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATAAATATCTGCAT 192536
|| || | || || || || ||||| || || || | ||| ||||||||
Sbjct 497522 ACCTCCAATGTGATTGTCTTCCCAGTCAAAGTCTTCACAAAGATCTGCAT 497473
>seq10
Length=65527505
Score = 107 bits (118), Expect = 4e-18
Identities = 165/230 (72%), Gaps = 4/230 (2%)
Strand=Plus/Plus
Query 192309 ACCACCTCTAAGACGTAATACTAAATGTAAAGTAGCCTC-TTTAGAGATATTATAATCAG 192367
||| || | ||||| || || | ||| | |||| ||| ||| || ||||| |||||||
Sbjct 65066503 ACCTCCACAAAGACTCAAGACAAGATGAATTGTAGACTCCTTTTGA-ATATTGTAATCAG 65066561
Query 192368 ATAATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCTCTGTTGATCAGGTG 192427
| ||| | ||||| | |||||||| ||| |||| | |||||| |||||||| | |
Sbjct 65066562 CAAGTGTATGATCATCCTTAAATTGTTTTCCACCAAATACTAATCTTTGTTGATCTGAGG 65066621
Query 192428 GTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGAATCTG-ACGATTCT 192486
| ||||||||||| |||| || || ||| ||||| | || | | | || |||
Sbjct 65066622 GAATTCCTTCTTTGTCTTCAATCTTTGCTTTAACATTGTTAATGGTGTTGGAACTCTTC- 65066680
Query 192487 ACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATAAATATCTGCAT 192536
|| || ||||||||||| || ||| | | ||||||| ||| || |||||
Sbjct 65066681 ACATCCAGAGTAATGGTCTTTCCAATGAGAGTTTTAACAAAGATTTGCAT 65066730
Score = 91.5 bits (100), Expect = 3e-13
Identities = 158/230 (69%), Gaps = 0/230 (0%)
Strand=Plus/Plus
Query 192307 ATACCACCTCTAAGACGTAATACTAAATGTAAAGTAGCCTCTTTAGAGATATTATAATCA 192366
|| ||||| | |||||| | || || || | ||| | |||||| || || ||||||
Sbjct 1072490 ATGCCACCACGAAGACGGAGCACCAAGTGGAGAGTTGACTCTTTCTGAATGTTGTAATCA 1072549
Query 192367 GATAATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCTCTGTTGATCAGGT 192426
| || || || | || || | || || || |||||||| | ||||| || || ||
Sbjct 1072550 GCTAGAGTACGACCGTCTTCAAGCTGCTTTCCTGCAAAGATCAGCCTCTGCTGGTCTGGG 1072609
Query 192427 GGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGAATCTGACGATTCT 192486
|| || ||||| || || || || || ||| ||||| || | ||||| |||
Sbjct 1072610 GGAATGCCTTCCTTGTCCTGGATCTTGGCTTTAACATTGTCAATGGTGTCTGAGCTTTCC 1072669
Query 192487 ACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATAAATATCTGCAT 192536
|| || || || || || || ||||| | ||||||| ||||||||||||
Sbjct 1072670 ACCTCAAGGGTGATAGTCTTTCCAGTGAGGGTTTTAACAAATATCTGCAT 1072719
Score = 86.0 bits (94), Expect = 1e-11
Identities = 74/92 (80%), Gaps = 0/92 (0%)
Strand=Plus/Plus
Query 192355 ATATTATAATCAGATAATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCTC 192414
|| || ||||||| | |||| |||| ||||||||||| |||||||| || | ||||
Sbjct 463846 ATGTTGTAATCAGCCAGGGTTCTACCATCTTCCAATTGTTTTCCAGCAAAAATCAGTCTC 463905
Query 192415 TGTTGATCAGGTGGTATTCCTTCTTTATCTTG 192446
|| |||||||| ||||| ||||||||||| ||
Sbjct 463906 TGCTGATCAGGAGGTATGCCTTCTTTATCCTG 463937
>seq1
Length=98543444
Score = 95.1 bits (104), Expect = 2e-14
Identities = 132/185 (71%), Gaps = 0/185 (0%)
Strand=Plus/Minus
Query 192355 ATATTATAATCAGATAATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCTC 192414
|| || ||||||| || || ||| |||| || | || || || || ||||| |||| |
Sbjct 87380382 ATGTTGTAATCAGCTAGAGTACGTCCATCTTCGAGCTGCTTTCCGGCGAAGATCAATCGC 87380323
Query 192415 TGTTGATCAGGTGGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGAA 192474
|| || || ||||| || ||||| || ||||| || ||| ||| ||||| ||||
Sbjct 87380322 TGCTGGTCCGGTGGAATACCTTCCTTGTCTTGAATCTTAGCTTTGACATTGTCAATAGTG 87380263
Query 192475 TCTGACGATTCTACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATAAATATCTGC 192534
|| |||||| ||||| || || || || || || || | ||||| | || ||||||
Sbjct 87380262 TCGCTCGATTCAACTTCAAGCGTGATCGTCTTCCCCGTAAGAGTTTTCACGAAGATCTGC 87380203
Query 192535 ATTTT 192539
|||||
Sbjct 87380202 ATTTT 87380198
>seq12
Length=67145203
Score = 93.3 bits (102), Expect = 8e-14
Identities = 132/186 (71%), Gaps = 0/186 (0%)
Strand=Plus/Plus
Query 192354 GATATTATAATCAGATAATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCT 192413
||| || || |||| || ||||| |||| || | || ||||| || || || ||||
Sbjct 66287185 GATGTTGTAGTCAGCTAGCGTTCGGCCATCCTCGAGCTGCTTACCGGCGAAAATCAATCG 66287244
Query 192414 CTGTTGATCAGGTGGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGA 192473
||| || || ||||| || ||||| || ||||| || ||| || ||||| || |
Sbjct 66287245 CTGCTGGTCTGGTGGAATGCCTTCCTTGTCTTGAATCTTAGCCTTAACATTGTCAATGGT 66287304
Query 192474 ATCTGACGATTCTACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATAAATATCTG 192533
||||| || ||||| || | |||||||| || || || | || || | ||| |||||
Sbjct 66287305 GTCTGATGACTCTACCTCCAAGGTAATGGTCTTGCCCGTCAGGGTCTTCACAAAGATCTG 66287364
Query 192534 CATTTT 192539
||||||
Sbjct 66287365 CATTTT 66287370
Score = 87.8 bits (96), Expect = 4e-12
Identities = 131/186 (70%), Gaps = 0/186 (0%)
Strand=Plus/Minus
Query 192354 GATATTATAATCAGATAATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCT 192413
||| || || |||| || ||||| |||| || | || || || || || || || ||
Sbjct 66338158 GATGTTGTAGTCAGCTAGCGTTCGGCCATCCTCAAGCTGCTTTCCCGCGAAAATCAACCT 66338099
Query 192414 CTGTTGATCAGGTGGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGA 192473
||| || || ||||| || ||||| || || || || ||| || ||||| || |
Sbjct 66338098 CTGCTGGTCTGGTGGAATGCCTTCCTTGTCCTGAATCTTAGCCTTAACATTGTCAATGGT 66338039
Query 192474 ATCTGACGATTCTACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATAAATATCTG 192533
||| || || ||||| |||| ||||| || || || |||| || || | ||| |||||
Sbjct 66338038 ATCCGATGACTCTACCTCTAAGGTAATAGTCTTGCCCGTTAGGGTCTTCACAAAGATCTG 66337979
Query 192534 CATTTT 192539
||||||
Sbjct 66337978 CATTTT 66337973
>seq4
Length=66470942
Score = 86.0 bits (94), Expect = 1e-11
Identities = 145/207 (70%), Gaps = 5/207 (2%)
Strand=Plus/Minus
Query 192328 ACTAAATGTAAAGTAGCCTCTTTAGAGATATTATAATCAGATAATGTTCGTTCATCATCC 192387
|||| ||||| ||| | | ||| ||| | || || | || || || |||| ||
Sbjct 46321613 ACTAGATGTAGAGTTGATTTTTTCTGGATGCTGTAGTCCGCCAAGGTGCGGCCATCCTCG 46321554
Query 192388 AATTGTTTACCAGCAAAGATTAATCTCTGTTGATCAGGTGGTATTCCTTCTTTATCTTGT 192447
| || ||||||||||| || | || || || || || || ||||||||||| ||||||
Sbjct 46321553 AGCTGCTTACCAGCAAAAATCAGCCTTTGCTGGTCTGGAGGGATTCCTTCTTTGTCTTGT 46321494
Query 192448 ATTTTATTTTTTACATTAGTTATAGAAT--CTGACGATTCTACTTCTAGAGTAATGGTTT 192505
|| || || |||| |||| || |||| |||| ||||| |||||||||||||
Sbjct 46321493 ATCTTGGCCTTAGCATTGTCGATAGTATTGCTGA--ATTCGACTTCCAGAGTAATGGTTT 46321436
Query 192506 TACCAGTTAATGTTTTAATAAATATCT 192532
|| | | || ||||| | |||||||
Sbjct 46321435 TA-CTGGTAGAGTTTTCACGAATATCT 46321410
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 984440330070750
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