Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Solanum_20lycopersicum_20[refseq_20GCF_5F000188115.3_202014-10-16] 3,145 sequences; 823,786,402 total letters Query= NC_021248.1 Length=307691 Score E Sequences producing significant alignments: (Bits) Value seq11 127 4e-24 seq10 107 4e-18 seq1 95.1 2e-14 seq12 93.3 8e-14 seq4 86.0 1e-11 >seq11 Length=56302525 Score = 127 bits (140), Expect = 4e-24 Identities = 166/230 (72%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 192307 ATACCACCTCTAAGACGTAATACTAAATGTAAAGTAGCCTCTTTAGAGATATTATAATCA 192366 || ||||| | ||||| | || | ||| | |||| |||||| ||| || |||||| Sbjct 496562 ATCCCACCACGTAGACGGAGGACAAGATGAAGGGTAGACTCTTTTTGGATGTTGTAATCA 496503 Query 192367 GATAATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCTCTGTTGATCAGGT 192426 | | |||||| |||| || | ||||| ||||||||||| | |||||| ||||| || Sbjct 496502 GCAAGTGTTCGGCCATCTTCAAGCTGTTTCCCAGCAAAGATCAGTCTCTGCTGATCTGGA 496443 Query 192427 GGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGAATCTGACGATTCT 192486 || || ||||| || ||||| || ||| ||| |||||| || | || || || Sbjct 496442 GGAATGCCTTCCTTGTCTTGAATCTTAGCTTTGACATTATCAATGGTGTCAGAACTCTCA 496383 Query 192487 ACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATAAATATCTGCAT 192536 || || ||||| ||||| || || || | ||| |||| |||||||||||| Sbjct 496382 ACCTCAAGAGTGATGGTCTTTCCGGTGAGTGTCTTAACAAATATCTGCAT 496333 Score = 104 bits (114), Expect = 5e-17 Identities = 161/230 (70%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 192307 ATACCACCTCTAAGACGTAATACTAAATGTAAAGTAGCCTCTTTAGAGATATTATAATCA 192366 |||||||| | ||| || | || | || | || | ||| || ||| || |||||| Sbjct 496790 ATACCACCACGAAGGCGAAGGACAAGGTGAAGGGTGGACTCCTTTTGGATGTTGTAATCA 496731 Query 192367 GATAATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCTCTGTTGATCAGGT 192426 | | |||||| |||| || | ||||| ||||||||||| | ||||| || || || Sbjct 496730 GCAAGTGTTCGGCCATCTTCAAGCTGTTTCCCAGCAAAGATCAGCCTCTGCTGGTCTGGG 496671 Query 192427 GGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGAATCTGACGATTCT 192486 || || ||||| || ||||| |||||| ||| |||||| || | ||||| || Sbjct 496670 GGAATACCTTCCTTGTCTTGAATTTTAGCTTTGACATTATCGATGGTGTCTGAGCTCTCG 496611 Query 192487 ACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATAAATATCTGCAT 192536 || || ||||| || || || || || | ||||||| ||| || ||||| Sbjct 496610 ACCTCAAGAGTTATAGTCTTTCCGGTCAGAGTTTTAACAAAGATTTGCAT 496561 Score = 104 bits (114), Expect = 5e-17 Identities = 161/230 (70%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 192307 ATACCACCTCTAAGACGTAATACTAAATGTAAAGTAGCCTCTTTAGAGATATTATAATCA 192366 || ||||||||||| || | || | || | || | ||||| || || ||||| Sbjct 497246 ATGCCACCTCTAAGGCGAAGAACAAGGTGCAGGGTTGATTCTTTCTGAATGTTGTAATCT 497187 Query 192367 GATAATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCTCTGTTGATCAGGT 192426 | || || | | |||| || | ||| || ||||||||||| |||||||| || || || Sbjct 497186 GCCAACGTCCTTCCATCCTCAAGTTGCTTTCCAGCAAAGATCAATCTCTGCTGGTCTGGA 497127 Query 192427 GGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGAATCTGACGATTCT 192486 || || || || || |||||||| || ||| ||||| |||| |||||| || Sbjct 497126 GGAATACCCTCCTTGTCTTGTATCTTTGCTTTAACATTGTCGATAGTATCTGAACTCTCA 497067 Query 192487 ACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATAAATATCTGCAT 192536 || || | |||||| || || || || ||||| || | |||||| ||||| Sbjct 497066 ACCTCCAAAGTAATTGTCTTCCCTGTCAATGTCTTGACAAATATTTGCAT 497017 Score = 98.7 bits (108), Expect = 2e-15 Identities = 133/184 (72%), Gaps = 1/184 (1%) Strand=Plus/Plus Query 192354 GATATTATAATCAGATAATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCT 192413 ||| || ||||||| | |||| | |||| || | ||||| ||||||||||| | || Sbjct 487544 GATGTTGTAATCAGCAACTGTTTGGCCATCTTCAAGCTGTTTCCCAGCAAAGATCAGCCT 487603 Query 192414 CTGTTGATCAGGTGGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGA 192473 ||| ||||| || || || ||||| || ||||| || ||| |||||||||| ||| Sbjct 487604 CTGCTGATCTGGAGGAATGCCTTCCTTGTCTTGAATCTTAGCTTTTACATTATCACTAGT 487663 Query 192474 ATCTGACGATTCTACTTCTAGAGTAATGGTTTTACCAGTTAATGT-TTTAATAAATATCT 192532 || || || || || ||||| ||||| || || || | || || || |||||||| Sbjct 487664 GTCAGAGCTCTCGACCTCAAGAGTGATGGTCTTTCCGGTGAGCGTCTTAAACAAATATCT 487723 Query 192533 GCAT 192536 |||| Sbjct 487724 GCAT 487727 Score = 93.3 bits (102), Expect = 8e-14 Identities = 143/204 (70%), Gaps = 0/204 (0%) Strand=Plus/Minus Query 192333 ATGTAAAGTAGCCTCTTTAGAGATATTATAATCAGATAATGTTCGTTCATCATCCAATTG 192392 ||| | ||||| |||||| ||| ||||| || | | || || |||| || | || Sbjct 497904 ATGAAGAGTAGACTCTTTCTGGATGTTATAGTCTGCAAGGGTGCGGCCATCCTCAAGCTG 497845 Query 192393 TTTACCAGCAAAGATTAATCTCTGTTGATCAGGTGGTATTCCTTCTTTATCTTGTATTTT 192452 |||||||||||||| | ||||||||||| ||||| || ||||| || || ||||| || Sbjct 497844 CTTACCAGCAAAGATGAGCCTCTGTTGATCTGGTGGGATCCCTTCCTTGTCCTGTATCTT 497785 Query 192453 ATTTTTTACATTAGTTATAGAATCTGACGATTCTACTTCTAGAGTAATGGTTTTACCAGT 192512 ||| ||||| |||| ||| || || || || | || || || || ||||| Sbjct 497784 TGCTTTCACATTGTCAATAGTATCAGAGCTCTCCACCTCCAATGTGATTGTCTTCCCAGT 497725 Query 192513 TAATGTTTTAATAAATATCTGCAT 192536 | || || | ||| |||||||| Sbjct 497724 AAGAGTCTTCACAAAGATCTGCAT 497701 Score = 86.0 bits (94), Expect = 1e-11 Identities = 157/230 (68%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 192307 ATACCACCTCTAAGACGTAATACTAAATGTAAAGTAGCCTCTTTAGAGATATTATAATCA 192366 || || ||||| | ||| || || | ||| | ||| | ||| || ||| || || || Sbjct 497702 ATCCCTCCTCTCAAACGCAACACCAGATGGAGAGTTGACTCCTTCTGGATGTTGTAGTCT 497643 Query 192367 GATAATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCTCTGTTGATCAGGT 192426 | | || | |||| || | |||||||||||||||||| || | |||||| || || Sbjct 497642 GCAAGAGTCCTCCCATCCTCAAGTTGTTTACCAGCAAAGATCAAACGCTGTTGGTCTGGG 497583 Query 192427 GGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGAATCTGACGATTCT 192486 || || || || || ||||| || || ||| ||||| || | |||||| || Sbjct 497582 GGAATACCCTCCTTGTCTTGAATCTTTGCTTTCACATTGTCAATGGTATCTGAACTCTCA 497523 Query 192487 ACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATAAATATCTGCAT 192536 || || | || || || || ||||| || || || | ||| |||||||| Sbjct 497522 ACCTCCAATGTGATTGTCTTCCCAGTCAAAGTCTTCACAAAGATCTGCAT 497473 >seq10 Length=65527505 Score = 107 bits (118), Expect = 4e-18 Identities = 165/230 (72%), Gaps = 4/230 (2%) Strand=Plus/Plus Query 192309 ACCACCTCTAAGACGTAATACTAAATGTAAAGTAGCCTC-TTTAGAGATATTATAATCAG 192367 ||| || | ||||| || || | ||| | |||| ||| ||| || ||||| ||||||| Sbjct 65066503 ACCTCCACAAAGACTCAAGACAAGATGAATTGTAGACTCCTTTTGA-ATATTGTAATCAG 65066561 Query 192368 ATAATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCTCTGTTGATCAGGTG 192427 | ||| | ||||| | |||||||| ||| |||| | |||||| |||||||| | | Sbjct 65066562 CAAGTGTATGATCATCCTTAAATTGTTTTCCACCAAATACTAATCTTTGTTGATCTGAGG 65066621 Query 192428 GTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGAATCTG-ACGATTCT 192486 | ||||||||||| |||| || || ||| ||||| | || | | | || ||| Sbjct 65066622 GAATTCCTTCTTTGTCTTCAATCTTTGCTTTAACATTGTTAATGGTGTTGGAACTCTTC- 65066680 Query 192487 ACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATAAATATCTGCAT 192536 || || ||||||||||| || ||| | | ||||||| ||| || ||||| Sbjct 65066681 ACATCCAGAGTAATGGTCTTTCCAATGAGAGTTTTAACAAAGATTTGCAT 65066730 Score = 91.5 bits (100), Expect = 3e-13 Identities = 158/230 (69%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 192307 ATACCACCTCTAAGACGTAATACTAAATGTAAAGTAGCCTCTTTAGAGATATTATAATCA 192366 || ||||| | |||||| | || || || | ||| | |||||| || || |||||| Sbjct 1072490 ATGCCACCACGAAGACGGAGCACCAAGTGGAGAGTTGACTCTTTCTGAATGTTGTAATCA 1072549 Query 192367 GATAATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCTCTGTTGATCAGGT 192426 | || || || | || || | || || || |||||||| | ||||| || || || Sbjct 1072550 GCTAGAGTACGACCGTCTTCAAGCTGCTTTCCTGCAAAGATCAGCCTCTGCTGGTCTGGG 1072609 Query 192427 GGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGAATCTGACGATTCT 192486 || || ||||| || || || || || ||| ||||| || | ||||| ||| Sbjct 1072610 GGAATGCCTTCCTTGTCCTGGATCTTGGCTTTAACATTGTCAATGGTGTCTGAGCTTTCC 1072669 Query 192487 ACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATAAATATCTGCAT 192536 || || || || || || || ||||| | ||||||| |||||||||||| Sbjct 1072670 ACCTCAAGGGTGATAGTCTTTCCAGTGAGGGTTTTAACAAATATCTGCAT 1072719 Score = 86.0 bits (94), Expect = 1e-11 Identities = 74/92 (80%), Gaps = 0/92 (0%) Strand=Plus/Plus Query 192355 ATATTATAATCAGATAATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCTC 192414 || || ||||||| | |||| |||| ||||||||||| |||||||| || | |||| Sbjct 463846 ATGTTGTAATCAGCCAGGGTTCTACCATCTTCCAATTGTTTTCCAGCAAAAATCAGTCTC 463905 Query 192415 TGTTGATCAGGTGGTATTCCTTCTTTATCTTG 192446 || |||||||| ||||| ||||||||||| || Sbjct 463906 TGCTGATCAGGAGGTATGCCTTCTTTATCCTG 463937 >seq1 Length=98543444 Score = 95.1 bits (104), Expect = 2e-14 Identities = 132/185 (71%), Gaps = 0/185 (0%) Strand=Plus/Minus Query 192355 ATATTATAATCAGATAATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCTC 192414 || || ||||||| || || ||| |||| || | || || || || ||||| |||| | Sbjct 87380382 ATGTTGTAATCAGCTAGAGTACGTCCATCTTCGAGCTGCTTTCCGGCGAAGATCAATCGC 87380323 Query 192415 TGTTGATCAGGTGGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGAA 192474 || || || ||||| || ||||| || ||||| || ||| ||| ||||| |||| Sbjct 87380322 TGCTGGTCCGGTGGAATACCTTCCTTGTCTTGAATCTTAGCTTTGACATTGTCAATAGTG 87380263 Query 192475 TCTGACGATTCTACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATAAATATCTGC 192534 || |||||| ||||| || || || || || || || | ||||| | || |||||| Sbjct 87380262 TCGCTCGATTCAACTTCAAGCGTGATCGTCTTCCCCGTAAGAGTTTTCACGAAGATCTGC 87380203 Query 192535 ATTTT 192539 ||||| Sbjct 87380202 ATTTT 87380198 >seq12 Length=67145203 Score = 93.3 bits (102), Expect = 8e-14 Identities = 132/186 (71%), Gaps = 0/186 (0%) Strand=Plus/Plus Query 192354 GATATTATAATCAGATAATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCT 192413 ||| || || |||| || ||||| |||| || | || ||||| || || || |||| Sbjct 66287185 GATGTTGTAGTCAGCTAGCGTTCGGCCATCCTCGAGCTGCTTACCGGCGAAAATCAATCG 66287244 Query 192414 CTGTTGATCAGGTGGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGA 192473 ||| || || ||||| || ||||| || ||||| || ||| || ||||| || | Sbjct 66287245 CTGCTGGTCTGGTGGAATGCCTTCCTTGTCTTGAATCTTAGCCTTAACATTGTCAATGGT 66287304 Query 192474 ATCTGACGATTCTACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATAAATATCTG 192533 ||||| || ||||| || | |||||||| || || || | || || | ||| ||||| Sbjct 66287305 GTCTGATGACTCTACCTCCAAGGTAATGGTCTTGCCCGTCAGGGTCTTCACAAAGATCTG 66287364 Query 192534 CATTTT 192539 |||||| Sbjct 66287365 CATTTT 66287370 Score = 87.8 bits (96), Expect = 4e-12 Identities = 131/186 (70%), Gaps = 0/186 (0%) Strand=Plus/Minus Query 192354 GATATTATAATCAGATAATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCT 192413 ||| || || |||| || ||||| |||| || | || || || || || || || || Sbjct 66338158 GATGTTGTAGTCAGCTAGCGTTCGGCCATCCTCAAGCTGCTTTCCCGCGAAAATCAACCT 66338099 Query 192414 CTGTTGATCAGGTGGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGA 192473 ||| || || ||||| || ||||| || || || || ||| || ||||| || | Sbjct 66338098 CTGCTGGTCTGGTGGAATGCCTTCCTTGTCCTGAATCTTAGCCTTAACATTGTCAATGGT 66338039 Query 192474 ATCTGACGATTCTACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATAAATATCTG 192533 ||| || || ||||| |||| ||||| || || || |||| || || | ||| ||||| Sbjct 66338038 ATCCGATGACTCTACCTCTAAGGTAATAGTCTTGCCCGTTAGGGTCTTCACAAAGATCTG 66337979 Query 192534 CATTTT 192539 |||||| Sbjct 66337978 CATTTT 66337973 >seq4 Length=66470942 Score = 86.0 bits (94), Expect = 1e-11 Identities = 145/207 (70%), Gaps = 5/207 (2%) Strand=Plus/Minus Query 192328 ACTAAATGTAAAGTAGCCTCTTTAGAGATATTATAATCAGATAATGTTCGTTCATCATCC 192387 |||| ||||| ||| | | ||| ||| | || || | || || || |||| || Sbjct 46321613 ACTAGATGTAGAGTTGATTTTTTCTGGATGCTGTAGTCCGCCAAGGTGCGGCCATCCTCG 46321554 Query 192388 AATTGTTTACCAGCAAAGATTAATCTCTGTTGATCAGGTGGTATTCCTTCTTTATCTTGT 192447 | || ||||||||||| || | || || || || || || ||||||||||| |||||| Sbjct 46321553 AGCTGCTTACCAGCAAAAATCAGCCTTTGCTGGTCTGGAGGGATTCCTTCTTTGTCTTGT 46321494 Query 192448 ATTTTATTTTTTACATTAGTTATAGAAT--CTGACGATTCTACTTCTAGAGTAATGGTTT 192505 || || || |||| |||| || |||| |||| ||||| ||||||||||||| Sbjct 46321493 ATCTTGGCCTTAGCATTGTCGATAGTATTGCTGA--ATTCGACTTCCAGAGTAATGGTTT 46321436 Query 192506 TACCAGTTAATGTTTTAATAAATATCT 192532 || | | || ||||| | ||||||| Sbjct 46321435 TA-CTGGTAGAGTTTTCACGAATATCT 46321410 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 984440330070750