Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Solanum_20lycopersicum_20[refseq_20GCF_5F000188115.3_202014-10-16] 3,145 sequences; 823,786,402 total letters Query= NC_021249.1 Length=282895 Score E Sequences producing significant alignments: (Bits) Value seq11 104 4e-17 seq4 98.7 2e-15 seq1 96.9 6e-15 seq10 91.5 3e-13 seq12 89.7 9e-13 >seq11 Length=56302525 Score = 104 bits (114), Expect = 4e-17 Identities = 161/230 (70%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 171840 ATACCACCTCTAAGTCGTAATACTAAATGTAAAGTAGCCTCTTTAGAAATATTATAATCT 171899 || ||||||||||| || | || | || | || | ||||| ||| || |||||| Sbjct 497246 ATGCCACCTCTAAGGCGAAGAACAAGGTGCAGGGTTGATTCTTTCTGAATGTTGTAATCT 497187 Query 171900 GATAAAGATCGTTCGTCATCCAATTGTTTACCAGCAAAAATTAATCTCTGTTGGTCAGGT 171959 | || | | | | || || | ||| || |||||||| || |||||||| ||||| || Sbjct 497186 GCCAACGTCCTTCCATCCTCAAGTTGCTTTCCAGCAAAGATCAATCTCTGCTGGTCTGGA 497127 Query 171960 GGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGTATCTGACGATTCT 172019 || || || || || |||||||| || ||| ||||| ||||||||||| || Sbjct 497126 GGAATACCCTCCTTGTCTTGTATCTTTGCTTTAACATTGTCGATAGTATCTGAACTCTCA 497067 Query 172020 ACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATGAATATCTGCAT 172069 || || | |||||| || || || || ||||| || | ||||| ||||| Sbjct 497066 ACCTCCAAAGTAATTGTCTTCCCTGTCAATGTCTTGACAAATATTTGCAT 497017 Score = 91.5 bits (100), Expect = 3e-13 Identities = 158/230 (69%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 171840 ATACCACCTCTAAGTCGTAATACTAAATGTAAAGTAGCCTCTTTAGAAATATTATAATCT 171899 || ||||| | || || | || | ||| | |||| |||||| || || ||||| Sbjct 496562 ATCCCACCACGTAGACGGAGGACAAGATGAAGGGTAGACTCTTTTTGGATGTTGTAATCA 496503 Query 171900 GATAAAGATCGTTCGTCATCCAATTGTTTACCAGCAAAAATTAATCTCTGTTGGTCAGGT 171959 | | | ||| | || || | ||||| |||||||| || | |||||| || || || Sbjct 496502 GCAAGTGTTCGGCCATCTTCAAGCTGTTTCCCAGCAAAGATCAGTCTCTGCTGATCTGGA 496443 Query 171960 GGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGTATCTGACGATTCT 172019 || || ||||| || ||||| || ||| ||| |||||| || || || || || Sbjct 496442 GGAATGCCTTCCTTGTCTTGAATCTTAGCTTTGACATTATCAATGGTGTCAGAACTCTCA 496383 Query 172020 ACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATGAATATCTGCAT 172069 || || ||||| ||||| || || || | ||| |||| ||||||||||| Sbjct 496382 ACCTCAAGAGTGATGGTCTTTCCGGTGAGTGTCTTAACAAATATCTGCAT 496333 Score = 84.2 bits (92), Expect = 4e-11 Identities = 160/232 (69%), Gaps = 3/232 (1%) Strand=Plus/Plus Query 171840 ATACCACCTCTAAGTCGTAATACTAAATGTAAAGTAGCCTCTTTAGAAATATTATAATCT 171899 || ||||||||||| || | || | || | || | || ||| ||| || |||||| Sbjct 486826 ATGCCACCTCTAAGACGAAGAACAAGGTGCAGCGTTGACTGTTTCTGAATGTTGTAATCT 486885 Query 171900 GATAAAGATCGTT-CGTCATCCAATTGTTTACCAGCAAAAATTAATCTCTGTTGGTCAGG 171958 | |||||| || | || || | ||| | |||||||| || ||||||| |||| || Sbjct 486886 G-CCAAGATCCTTCCATCTTCAAGTTGCTCTCCAGCAAACATCAATCTCTACTGGTTCGG 486944 Query 171959 TGGTAT-TCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGTATCTGACGATT 172017 || || ||| |||| ||||| | || ||| ||||| | || |||||||| | Sbjct 486945 AGGAATACCCTCCTTTGTCTTGGACCTTTGCTTTAACATTGTTGATGGTATCTGAACTCT 487004 Query 172018 CTACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATGAATATCTGCAT 172069 | || || | |||||| || || || || ||||| |||| |||| ||||| Sbjct 487005 CAACCTCCAAAGTAATTGTCTTCCCTGTCAATGTCTTAACATATATTTGCAT 487056 >seq4 Length=66470942 Score = 98.7 bits (108), Expect = 2e-15 Identities = 110/144 (76%), Gaps = 5/144 (3%) Strand=Plus/Minus Query 171924 TGTTTACCAGCAAAAATTAATCTCTGTTGGTCAGGTGGTATTCCTTCTTTATCTTGTATT 171983 || |||||||||||||| | || || ||||| || || ||||||||||| |||||||| Sbjct 46321550 TGCTTACCAGCAAAAATCAGCCTTTGCTGGTCTGGAGGGATTCCTTCTTTGTCTTGTATC 46321491 Query 171984 TTATTTTTTACATTAGTTATAGTAT--CTGACGATTCTACTTCTAGAGTAATGGTTTTAC 172041 || || |||| ||||||| |||| |||| ||||| ||||||||||||||| Sbjct 46321490 TTGGCCTTAGCATTGTCGATAGTATTGCTGA--ATTCGACTTCCAGAGTAATGGTTTTA- 46321434 Query 172042 CAGTTAATGTTTTAATGAATATCT 172065 | | || ||||| | |||||||| Sbjct 46321433 CTGGTAGAGTTTTCACGAATATCT 46321410 Score = 86.0 bits (94), Expect = 1e-11 Identities = 101/132 (77%), Gaps = 6/132 (5%) Strand=Plus/Minus Query 171943 ATCTCTGTTGGTCAGGTGGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTA 172002 |||| || ||||| || || || |||||||| |||||||| || || |||| | Sbjct 46321413 ATCT-TGCTGGTCTGGAGGGAT-CCTTCTTTGTCTTGTATCTTGGCCTTAGCATTGTCGA 46321356 Query 172003 TAGTAT--CTGACGATTCTACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATGAA 172060 |||||| |||| |||| || || |||||||||||||||| || | ||||| ||||| Sbjct 46321355 TAGTATTGCTGA--ATTCGACCTCCAGAGTAATGGTTTTACTGGTCAGAGTTTTCATGAA 46321298 Query 172061 TATCTGCATTTT 172072 |||||||||||| Sbjct 46321297 TATCTGCATTTT 46321286 >seq1 Length=98543444 Score = 96.9 bits (106), Expect = 6e-15 Identities = 133/186 (72%), Gaps = 0/186 (0%) Strand=Plus/Minus Query 171887 AATATTATAATCTGATAAAGATCGTTCGTCATCCAATTGTTTACCAGCAAAAATTAATCT 171946 ||| || ||||| | || || ||| | || || | || || || || || || |||| Sbjct 87380383 AATGTTGTAATCAGCTAGAGTACGTCCATCTTCGAGCTGCTTTCCGGCGAAGATCAATCG 87380324 Query 171947 CTGTTGGTCAGGTGGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGT 172006 ||| ||||| ||||| || ||||| || ||||| || ||| ||| ||||| ||||| Sbjct 87380323 CTGCTGGTCCGGTGGAATACCTTCCTTGTCTTGAATCTTAGCTTTGACATTGTCAATAGT 87380264 Query 172007 ATCTGACGATTCTACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATGAATATCTG 172066 || |||||| ||||| || || || || || || || | ||||| | ||| ||||| Sbjct 87380263 GTCGCTCGATTCAACTTCAAGCGTGATCGTCTTCCCCGTAAGAGTTTTCACGAAGATCTG 87380204 Query 172067 CATTTT 172072 |||||| Sbjct 87380203 CATTTT 87380198 >seq10 Length=65527505 Score = 91.5 bits (100), Expect = 3e-13 Identities = 158/230 (69%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 171840 ATACCACCTCTAAGTCGTAATACTAAATGTAAAGTAGCCTCTTTAGAAATATTATAATCT 171899 || ||||| | ||| || | || || || | ||| | |||||| ||| || ||||| Sbjct 1072490 ATGCCACCACGAAGACGGAGCACCAAGTGGAGAGTTGACTCTTTCTGAATGTTGTAATCA 1072549 Query 171900 GATAAAGATCGTTCGTCATCCAATTGTTTACCAGCAAAAATTAATCTCTGTTGGTCAGGT 171959 | || || || |||| || | || || || ||||| || | ||||| ||||| || Sbjct 1072550 GCTAGAGTACGACCGTCTTCAAGCTGCTTTCCTGCAAAGATCAGCCTCTGCTGGTCTGGG 1072609 Query 171960 GGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGTATCTGACGATTCT 172019 || || ||||| || || || || || ||| ||||| || || ||||| ||| Sbjct 1072610 GGAATGCCTTCCTTGTCCTGGATCTTGGCTTTAACATTGTCAATGGTGTCTGAGCTTTCC 1072669 Query 172020 ACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATGAATATCTGCAT 172069 || || || || || || || ||||| | ||||||| ||||||||||| Sbjct 1072670 ACCTCAAGGGTGATAGTCTTTCCAGTGAGGGTTTTAACAAATATCTGCAT 1072719 Score = 89.7 bits (98), Expect = 9e-13 Identities = 130/184 (71%), Gaps = 0/184 (0%) Strand=Plus/Plus Query 171887 AATATTATAATCTGATAAAGATCGTTCGTCATCCAATTGTTTACCAGCAAAAATTAATCT 171946 |||||| ||||| | ||| | | | | || ||||| || || ||||||||||| || || Sbjct 1071625 AATATTGTAATCGGCTAATGTCCTTCCATCTTCCAACTGCTTGCCAGCAAAAATCAACCT 1071684 Query 171947 CTGTTGGTCAGGTGGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGT 172006 || ||||| ||||| || || ||||| || || || || ||||| || || || Sbjct 1071685 TTGCTGGTCTGGTGGGATACCCTCTTTGTCCTGAATCTTGGCCTTTACGTTGTCAATGGT 1071744 Query 172007 ATCTGACGATTCTACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATGAATATCTG 172066 || || ||| || || || ||||| || || ||||| || || || | ||| || || Sbjct 1071745 GTCGGAGCTTTCCACCTCAAGGGTAATAGTCTTGCCAGTCAAGGTCTTCACGAAGATTTG 1071804 Query 172067 CATT 172070 |||| Sbjct 1071805 CATT 1071808 >seq12 Length=67145203 Score = 89.7 bits (98), Expect = 9e-13 Identities = 109/149 (73%), Gaps = 0/149 (0%) Strand=Plus/Plus Query 171924 TGTTTACCAGCAAAAATTAATCTCTGTTGGTCAGGTGGTATTCCTTCTTTATCTTGTATT 171983 || ||||| || ||||| |||| ||| ||||| ||||| || ||||| || ||||| || Sbjct 66287222 TGCTTACCGGCGAAAATCAATCGCTGCTGGTCTGGTGGAATGCCTTCCTTGTCTTGAATC 66287281 Query 171984 TTATTTTTTACATTAGTTATAGTATCTGACGATTCTACTTCTAGAGTAATGGTTTTACCA 172043 ||| || ||||| || || ||||| || ||||| || | |||||||| || || Sbjct 66287282 TTAGCCTTAACATTGTCAATGGTGTCTGATGACTCTACCTCCAAGGTAATGGTCTTGCCC 66287341 Query 172044 GTTAATGTTTTAATGAATATCTGCATTTT 172072 || | || || | || ||||||||||| Sbjct 66287342 GTCAGGGTCTTCACAAAGATCTGCATTTT 66287370 Score = 84.2 bits (92), Expect = 4e-11 Identities = 108/149 (72%), Gaps = 0/149 (0%) Strand=Plus/Minus Query 171924 TGTTTACCAGCAAAAATTAATCTCTGTTGGTCAGGTGGTATTCCTTCTTTATCTTGTATT 171983 || || || || ||||| || ||||| ||||| ||||| || ||||| || || || || Sbjct 66338121 TGCTTTCCCGCGAAAATCAACCTCTGCTGGTCTGGTGGAATGCCTTCCTTGTCCTGAATC 66338062 Query 171984 TTATTTTTTACATTAGTTATAGTATCTGACGATTCTACTTCTAGAGTAATGGTTTTACCA 172043 ||| || ||||| || ||||| || || ||||| |||| ||||| || || || Sbjct 66338061 TTAGCCTTAACATTGTCAATGGTATCCGATGACTCTACCTCTAAGGTAATAGTCTTGCCC 66338002 Query 172044 GTTAATGTTTTAATGAATATCTGCATTTT 172072 |||| || || | || ||||||||||| Sbjct 66338001 GTTAGGGTCTTCACAAAGATCTGCATTTT 66337973 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 905100416841000