Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Solanum_20lycopersicum_20[refseq_20GCF_5F000188115.3_202014-10-16] 3,145 sequences; 823,786,402 total letters Query= NC_021343.1 Length=35430 Score E Sequences producing significant alignments: (Bits) Value seq1141 168 2e-37 >seq1141 Length=3271 Score = 168 bits (186), Expect = 2e-37 Identities = 515/778 (66%), Gaps = 26/778 (3%) Strand=Plus/Minus Query 10846 GGGTCGTAGCCGATCCATACCG---GCTTCCAGCCGAACGGCCGATCGAGCAACGGCTTC 10902 ||||||||||| | ||||||| | || | | || ||| | ||| ||| ||| Sbjct 3228 GGGTCGTAGCCCACCCATACCTCACGATTACCGA--AAGGGCGGGGCGACCAATGGCGGA 3171 Query 10903 ACGTCCGTCCACACGTCCCATGAATCGACCATGCACGCCTGTACGAGC--CGGAAG-GCG 10959 | |||| |||||| ||||| |||||||||| ||| | | |||| || || | | Sbjct 3170 A-GTCCTCCCACACCTCCCAGCTGTCGACCATGC-CGC--GCATGAGCATCGACAGCGGG 3115 Query 10960 AACACCGATGAGGTGTCGTCCACGAACTGGCACATGTACAGGTTTTCGAAATCGGCGGGG 11019 || || || | ||||| || | ||| |||||| |||||| ||||| || || | Sbjct 3114 AAGACAGAGGCCGTGTCATCGATGAAGCCGCACATCAGCAGGTTCTCGAAGTCCGCATCG 3055 Query 11020 CTGTTCGTTGAGC-GCAAGTCCTCCAGATC---CAGTTTCGTGAATCCGGATGCGATGGC 11075 |||| | | ||| |||| | || || || ||| || | |||| ||||||| Sbjct 3054 CTGTAC-TCCAGCCGCAACTGGTCGAGGTCGAACAGGTTGCAGCCACCGG---CGATGGC 2999 Query 11076 ATCCTCGGCCGTGACGATCTGCCGCCATTGCCCGTCGCCGCACTGGCGCCCG-CGTGCAA 11134 || || ||||||| ||||| ||| || ||||| ||||| | || ||| | ||||| Sbjct 2998 GTCTTCCACCGTGACAATCTGTTTCCACTGACCGTCCGCGCACCGCCGGCCGTCCTGCAA 2939 Query 11135 GCGACGTATGGGAAATGTCGATCTCGACGCGCTCGTCGTCGGGACGGTCGCGGTTGAAGT 11194 | || ||| | ||| | || | | || || | || |||| ||||| Sbjct 2938 GTT-CGCGTGGCTGACGTCAACGCGGATGTGGTCTTCCTTCTTCCGCCCGCGATTGAACA 2880 Query 11195 CCGCGCCAGTCCAAAACGCATAGGCTTCGTGCGTCGTTGTGGATGGCGTAGAGAAGTGCG 11254 |||||||| ||| |||| || |||||||| | | || ||||| ||||| | | Sbjct 2879 GCGCGCCAGACCAGAACGGGTACGCTTCGTGGGCAAGGCTCGAAGGCGTCGAGAAATAAG 2820 Query 11255 TCATCCGCAAATGCGAATGCGTCGCCATCCCCTTCGCTACCTTGTTCAGTTCG-GCAAAC 11313 || |||| | | ||| || | |||||||| || |||||| ||| || | || | Sbjct 2819 TCTGCCGCCACTTCGAGTGGATGGCCATCCCGGAGGCCACCTTGCGCAGCTCTTGGAAGC 2760 Query 11314 TTGCTG-ACCCAGAAATACTCATCGAAATACAGGTCGCCGTTGTAGCTTTGGGCCGTGCG 11372 |||| | |||||| ||||| || | ||| |||| ||||| ||||| || || ||||| Sbjct 2759 --GCTGGATCCAGAAGTACTCGTCCAGATAGAGGTTGCCGTGATAGCTCTGCGCGGTGCG 2702 Query 11373 TGAACTGGTGCCGAGAAAAATCAATTCCGCACCGTTCGACAACCGCATCGGATCGCCGGT 11432 || | |||||||| ||| || ||| ||||||| |||| |||||| ||||| | Sbjct 2701 TGCGTTTGTGCCGAGGAAATACAGCGTCGCGCCGTTCGGCAACACCATCGGCTCGCCCTT 2642 Query 11433 TAGCTCAACCTGCGCAGCGTTCCACGCAAATTTCTGGATATACGAGCGGAACACGTGTGC 11492 ||||| || ||||| | | ||| || | ||| || ||| ||||| || Sbjct 2641 CAGCTCCACGCCGGCAGCATCCTTCGCGAACTGGATGATGTATTGCTTGAAAACGTGGGC 2582 Query 11493 CTGTGCGCGGCTCGCCGACAGAAAAATCTGATTCGTGCCGGTTTCCAGCGCGCGCACGAG 11552 ||| || ||| ||||||| ||||||||||| || || || ||| | || Sbjct 2581 CTGCGCCTTGCTGGCCGACAAGAAAATCTGATTGCGCCCCGTGGTCAACGCATCAATGAA 2522 Query 11553 TGCCTCGTGCGCGAAATAGAACGTGGCGCCGATCTGTCGTGACTTCAGGATGTTGCGG 11610 ||||| | |||||||| ||||||| |||||||| || |||||| | |||||| Sbjct 2521 GGCCTCCCGTGCGAAATACCACGTGGCACCGATCTGGCGGCTCTTCAGAACATTGCGG 2464 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 113250170302080