Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Solanum_20lycopersicum_20[refseq_20GCF_5F000188115.3_202014-10-16]
3,145 sequences; 823,786,402 total letters
Query= NC_021343.1
Length=35430
Score E
Sequences producing significant alignments: (Bits) Value
seq1141 168 2e-37
>seq1141
Length=3271
Score = 168 bits (186), Expect = 2e-37
Identities = 515/778 (66%), Gaps = 26/778 (3%)
Strand=Plus/Minus
Query 10846 GGGTCGTAGCCGATCCATACCG---GCTTCCAGCCGAACGGCCGATCGAGCAACGGCTTC 10902
||||||||||| | ||||||| | || | | || ||| | ||| ||| |||
Sbjct 3228 GGGTCGTAGCCCACCCATACCTCACGATTACCGA--AAGGGCGGGGCGACCAATGGCGGA 3171
Query 10903 ACGTCCGTCCACACGTCCCATGAATCGACCATGCACGCCTGTACGAGC--CGGAAG-GCG 10959
| |||| |||||| ||||| |||||||||| ||| | | |||| || || | |
Sbjct 3170 A-GTCCTCCCACACCTCCCAGCTGTCGACCATGC-CGC--GCATGAGCATCGACAGCGGG 3115
Query 10960 AACACCGATGAGGTGTCGTCCACGAACTGGCACATGTACAGGTTTTCGAAATCGGCGGGG 11019
|| || || | ||||| || | ||| |||||| |||||| ||||| || || |
Sbjct 3114 AAGACAGAGGCCGTGTCATCGATGAAGCCGCACATCAGCAGGTTCTCGAAGTCCGCATCG 3055
Query 11020 CTGTTCGTTGAGC-GCAAGTCCTCCAGATC---CAGTTTCGTGAATCCGGATGCGATGGC 11075
|||| | | ||| |||| | || || || ||| || | |||| |||||||
Sbjct 3054 CTGTAC-TCCAGCCGCAACTGGTCGAGGTCGAACAGGTTGCAGCCACCGG---CGATGGC 2999
Query 11076 ATCCTCGGCCGTGACGATCTGCCGCCATTGCCCGTCGCCGCACTGGCGCCCG-CGTGCAA 11134
|| || ||||||| ||||| ||| || ||||| ||||| | || ||| | |||||
Sbjct 2998 GTCTTCCACCGTGACAATCTGTTTCCACTGACCGTCCGCGCACCGCCGGCCGTCCTGCAA 2939
Query 11135 GCGACGTATGGGAAATGTCGATCTCGACGCGCTCGTCGTCGGGACGGTCGCGGTTGAAGT 11194
| || ||| | ||| | || | | || || | || |||| |||||
Sbjct 2938 GTT-CGCGTGGCTGACGTCAACGCGGATGTGGTCTTCCTTCTTCCGCCCGCGATTGAACA 2880
Query 11195 CCGCGCCAGTCCAAAACGCATAGGCTTCGTGCGTCGTTGTGGATGGCGTAGAGAAGTGCG 11254
|||||||| ||| |||| || |||||||| | | || ||||| ||||| | |
Sbjct 2879 GCGCGCCAGACCAGAACGGGTACGCTTCGTGGGCAAGGCTCGAAGGCGTCGAGAAATAAG 2820
Query 11255 TCATCCGCAAATGCGAATGCGTCGCCATCCCCTTCGCTACCTTGTTCAGTTCG-GCAAAC 11313
|| |||| | | ||| || | |||||||| || |||||| ||| || | || |
Sbjct 2819 TCTGCCGCCACTTCGAGTGGATGGCCATCCCGGAGGCCACCTTGCGCAGCTCTTGGAAGC 2760
Query 11314 TTGCTG-ACCCAGAAATACTCATCGAAATACAGGTCGCCGTTGTAGCTTTGGGCCGTGCG 11372
|||| | |||||| ||||| || | ||| |||| ||||| ||||| || || |||||
Sbjct 2759 --GCTGGATCCAGAAGTACTCGTCCAGATAGAGGTTGCCGTGATAGCTCTGCGCGGTGCG 2702
Query 11373 TGAACTGGTGCCGAGAAAAATCAATTCCGCACCGTTCGACAACCGCATCGGATCGCCGGT 11432
|| | |||||||| ||| || ||| ||||||| |||| |||||| ||||| |
Sbjct 2701 TGCGTTTGTGCCGAGGAAATACAGCGTCGCGCCGTTCGGCAACACCATCGGCTCGCCCTT 2642
Query 11433 TAGCTCAACCTGCGCAGCGTTCCACGCAAATTTCTGGATATACGAGCGGAACACGTGTGC 11492
||||| || ||||| | | ||| || | ||| || ||| ||||| ||
Sbjct 2641 CAGCTCCACGCCGGCAGCATCCTTCGCGAACTGGATGATGTATTGCTTGAAAACGTGGGC 2582
Query 11493 CTGTGCGCGGCTCGCCGACAGAAAAATCTGATTCGTGCCGGTTTCCAGCGCGCGCACGAG 11552
||| || ||| ||||||| ||||||||||| || || || ||| | ||
Sbjct 2581 CTGCGCCTTGCTGGCCGACAAGAAAATCTGATTGCGCCCCGTGGTCAACGCATCAATGAA 2522
Query 11553 TGCCTCGTGCGCGAAATAGAACGTGGCGCCGATCTGTCGTGACTTCAGGATGTTGCGG 11610
||||| | |||||||| ||||||| |||||||| || |||||| | ||||||
Sbjct 2521 GGCCTCCCGTGCGAAATACCACGTGGCACCGATCTGGCGGCTCTTCAGAACATTGCGG 2464
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 113250170302080
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |