Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Solanum_20lycopersicum_20[refseq_20GCF_5F000188115.3_202014-10-16] 3,145 sequences; 823,786,402 total letters Query= NC_021774.1 Length=29742 Score E Sequences producing significant alignments: (Bits) Value seq1141 295 1e-75 >seq1141 Length=3271 Score = 295 bits (326), Expect = 1e-75 Identities = 555/806 (69%), Gaps = 20/806 (2%) Strand=Plus/Minus Query 1677 CGGCACTGTCGCCAGTGTGGGA---CGGGTCGTAGCCAATCCAGACCGGGCGCGAGCCGA 1733 |||||||||||||| | | |||||||||||| | ||| ||| || |||| Sbjct 3254 CGGCACTGTCGCCACCGCCGCCGTTCGGGTCGTAGCCCACCCATACCTCACGATTACCGA 3195 Query 1734 ACGGGTGGT-CGGCGAACGGGGCGAAGTCCTCCCATGTTTCCATCACGTCGACCATGCAG 1792 | ||| || || | || || | |||||||||||| ||| ||||||||||| | Sbjct 3194 AAGGGCGGGGCGACCAATGGCG-GAAGTCCTCCCACACCTCCCAGCTGTCGACCATGCCG 3136 Query 1793 CGCTGCAGCTCCTCGAACGGGAATACCGATGCCTTATCGTCGACAAACTCGCACATAAAC 1852 ||| ||| | | |||||| || || ||| | || |||| || ||||||| | | Sbjct 3135 CGCATGAGCATCGACAGCGGGAAGACAGAGGCCGTGTCATCGATGAAGCCGCACATCAGC 3076 Query 1853 AGGTTCTTAAAGTCCTCATCACTGTTTTCGCGTCTGAGCTGGTCGAGGTCGAACAGGGTG 1912 ||||||| |||||| |||| |||| || | | | ||||||||||||||||||| || Sbjct 3075 AGGTTCTCGAAGTCCGCATCGCTGTACTCCAGCCGCAACTGGTCGAGGTCGAACAGGTTG 3016 Query 1913 CAGCCACCGGCAAGGGCGTCCTCAATAGTGACAATCTGCCGCCACTGTCCGTCAGCGCAA 1972 ||||||||||| | |||||| || | ||||||||||| |||||| ||||| ||||| Sbjct 3015 CAGCCACCGGCGATGGCGTCTTCCACCGTGACAATCTGTTTCCACTGACCGTCCGCGCAC 2956 Query 1973 AGAAGCCCA-CCGGCGAGCGCGCTGTGACTGATGTCGATTTCGATGCGGTCAGCAGCACT 2031 | | || || || || ||| ||| |||| ||| | |||| |||| | | Sbjct 2955 CGCCGGCCGTCCTGCAAGTTCGC-GTGGCTGACGTCAACGCGGATGTGGTCTTCCTTCTT 2897 Query 2032 GGCGCGCCCCTTGTTGAACAGCTCGCCAGACCAGAAGGGATAAGCGCCGTGCGCCAGCGT 2091 ||||| ||||||||| ||||||||||||| || || || |||| || || | Sbjct 2896 C---CGCCCGCGATTGAACAGCGCGCCAGACCAGAACGGGTACGCTTCGTGGGCAAGGCT 2840 Query 2092 GGAAGGTGTCGAAAAGTAAGTTGAGCGCAGATGCTTCTGCGAGGCCATGCCCGATGCGAC 2151 ||||| ||||| || ||||| ||| | | || |||||| || || || || Sbjct 2839 CGAAGGCGTCGAGAAATAAGTCTGCCGCCACTTCGAGTGGATGGCCATCCCGGAGGCCAC 2780 Query 2152 TTTGCGCAGCTTCTGAAAATTCGGGATCCAGAATATTTCATCGACATACAGGTCGCCGTT 2211 |||||||||| || || | |||||||||| || || | ||| |||| ||||| Sbjct 2779 CTTGCGCAGCTCTTGGAAGCGCTGGATCCAGAAGTACTCGTCCAGATAGAGGTTGCCGTG 2720 Query 2212 ATGGCTTTGTGCGGTGTTGGAATTGGTGCCGAGAAAAATCAGCTTTGCGCCGTTGTTGCC 2271 || ||| || |||||| | || |||||||| ||| |||| | |||||||| | Sbjct 2719 ATAGCTCTGCGCGGTGCGTGCGTTTGTGCCGAGGAAATACAGCGTCGCGCCGTT-----C 2665 Query 2272 GATAACA--ATCGGGTCGCCGGTCAGGTCGACGTCAAC--CAGTCG-CGCAAACTGGATG 2326 | |||| ||||| ||||| |||| || ||| | | || | ||| ||||||||| Sbjct 2664 GGCAACACCATCGGCTCGCCCTTCAGCTCCACGCCGGCAGCATCCTTCGCGAACTGGATG 2605 Query 2327 ATGTATTCCCGGAACACGTAAGCCTGCGTTTTACTGGCCGACAGAAAAATCTGGTTATGG 2386 ||||||| | ||| |||| ||||||| || |||||||||| |||||||| || | Sbjct 2604 ATGTATTGCTTGAAAACGTGGGCCTGCGCCTTGCTGGCCGACAAGAAAATCTGATTGCGC 2545 Query 2387 CCGGTCTTGAGCGCGCGCAGCAGTGCCTCGCGGGAAAAGTAGAACGTCGCGCCAATCTGG 2446 || || | | ||| | | ||||| || | || || |||| || || |||||| Sbjct 2544 CCCGTGGTCAACGCATCAATGAAGGCCTCCCGTGCGAAATACCACGTGGCACCGATCTGG 2485 Query 2447 CGGGATTTGAGAATATCGCGAATACG 2472 ||| || |||| || ||| ||||| Sbjct 2484 CGGCTCTTCAGAACATTGCGGATACG 2459 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 95049250074960