Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Solanum_20lycopersicum_20[refseq_20GCF_5F000188115.3_202014-10-16]
3,145 sequences; 823,786,402 total letters
Query= NC_021774.1
Length=29742
Score E
Sequences producing significant alignments: (Bits) Value
seq1141 295 1e-75
>seq1141
Length=3271
Score = 295 bits (326), Expect = 1e-75
Identities = 555/806 (69%), Gaps = 20/806 (2%)
Strand=Plus/Minus
Query 1677 CGGCACTGTCGCCAGTGTGGGA---CGGGTCGTAGCCAATCCAGACCGGGCGCGAGCCGA 1733
|||||||||||||| | | |||||||||||| | ||| ||| || ||||
Sbjct 3254 CGGCACTGTCGCCACCGCCGCCGTTCGGGTCGTAGCCCACCCATACCTCACGATTACCGA 3195
Query 1734 ACGGGTGGT-CGGCGAACGGGGCGAAGTCCTCCCATGTTTCCATCACGTCGACCATGCAG 1792
| ||| || || | || || | |||||||||||| ||| ||||||||||| |
Sbjct 3194 AAGGGCGGGGCGACCAATGGCG-GAAGTCCTCCCACACCTCCCAGCTGTCGACCATGCCG 3136
Query 1793 CGCTGCAGCTCCTCGAACGGGAATACCGATGCCTTATCGTCGACAAACTCGCACATAAAC 1852
||| ||| | | |||||| || || ||| | || |||| || ||||||| | |
Sbjct 3135 CGCATGAGCATCGACAGCGGGAAGACAGAGGCCGTGTCATCGATGAAGCCGCACATCAGC 3076
Query 1853 AGGTTCTTAAAGTCCTCATCACTGTTTTCGCGTCTGAGCTGGTCGAGGTCGAACAGGGTG 1912
||||||| |||||| |||| |||| || | | | ||||||||||||||||||| ||
Sbjct 3075 AGGTTCTCGAAGTCCGCATCGCTGTACTCCAGCCGCAACTGGTCGAGGTCGAACAGGTTG 3016
Query 1913 CAGCCACCGGCAAGGGCGTCCTCAATAGTGACAATCTGCCGCCACTGTCCGTCAGCGCAA 1972
||||||||||| | |||||| || | ||||||||||| |||||| ||||| |||||
Sbjct 3015 CAGCCACCGGCGATGGCGTCTTCCACCGTGACAATCTGTTTCCACTGACCGTCCGCGCAC 2956
Query 1973 AGAAGCCCA-CCGGCGAGCGCGCTGTGACTGATGTCGATTTCGATGCGGTCAGCAGCACT 2031
| | || || || || ||| ||| |||| ||| | |||| |||| | |
Sbjct 2955 CGCCGGCCGTCCTGCAAGTTCGC-GTGGCTGACGTCAACGCGGATGTGGTCTTCCTTCTT 2897
Query 2032 GGCGCGCCCCTTGTTGAACAGCTCGCCAGACCAGAAGGGATAAGCGCCGTGCGCCAGCGT 2091
||||| ||||||||| ||||||||||||| || || || |||| || || |
Sbjct 2896 C---CGCCCGCGATTGAACAGCGCGCCAGACCAGAACGGGTACGCTTCGTGGGCAAGGCT 2840
Query 2092 GGAAGGTGTCGAAAAGTAAGTTGAGCGCAGATGCTTCTGCGAGGCCATGCCCGATGCGAC 2151
||||| ||||| || ||||| ||| | | || |||||| || || || ||
Sbjct 2839 CGAAGGCGTCGAGAAATAAGTCTGCCGCCACTTCGAGTGGATGGCCATCCCGGAGGCCAC 2780
Query 2152 TTTGCGCAGCTTCTGAAAATTCGGGATCCAGAATATTTCATCGACATACAGGTCGCCGTT 2211
|||||||||| || || | |||||||||| || || | ||| |||| |||||
Sbjct 2779 CTTGCGCAGCTCTTGGAAGCGCTGGATCCAGAAGTACTCGTCCAGATAGAGGTTGCCGTG 2720
Query 2212 ATGGCTTTGTGCGGTGTTGGAATTGGTGCCGAGAAAAATCAGCTTTGCGCCGTTGTTGCC 2271
|| ||| || |||||| | || |||||||| ||| |||| | |||||||| |
Sbjct 2719 ATAGCTCTGCGCGGTGCGTGCGTTTGTGCCGAGGAAATACAGCGTCGCGCCGTT-----C 2665
Query 2272 GATAACA--ATCGGGTCGCCGGTCAGGTCGACGTCAAC--CAGTCG-CGCAAACTGGATG 2326
| |||| ||||| ||||| |||| || ||| | | || | ||| |||||||||
Sbjct 2664 GGCAACACCATCGGCTCGCCCTTCAGCTCCACGCCGGCAGCATCCTTCGCGAACTGGATG 2605
Query 2327 ATGTATTCCCGGAACACGTAAGCCTGCGTTTTACTGGCCGACAGAAAAATCTGGTTATGG 2386
||||||| | ||| |||| ||||||| || |||||||||| |||||||| || |
Sbjct 2604 ATGTATTGCTTGAAAACGTGGGCCTGCGCCTTGCTGGCCGACAAGAAAATCTGATTGCGC 2545
Query 2387 CCGGTCTTGAGCGCGCGCAGCAGTGCCTCGCGGGAAAAGTAGAACGTCGCGCCAATCTGG 2446
|| || | | ||| | | ||||| || | || || |||| || || ||||||
Sbjct 2544 CCCGTGGTCAACGCATCAATGAAGGCCTCCCGTGCGAAATACCACGTGGCACCGATCTGG 2485
Query 2447 CGGGATTTGAGAATATCGCGAATACG 2472
||| || |||| || ||| |||||
Sbjct 2484 CGGCTCTTCAGAACATTGCGGATACG 2459
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 95049250074960
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