Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Solanum_20lycopersicum_20[refseq_20GCF_5F000188115.3_202014-10-16] 3,145 sequences; 823,786,402 total letters Query= NC_022646.1 Length=101818 Score E Sequences producing significant alignments: (Bits) Value seq7 113 3e-20 seq11 105 4e-18 seq1 100 2e-16 seq10 96.9 2e-15 >seq7 Length=68045021 Score = 113 bits (124), Expect = 3e-20 Identities = 152/212 (72%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 34766 AGGACCAGGTGAATGGTGCTCTCCTTCTGAATGTTATAGTCCGATAGGCTGCGCTCATCG 34825 || |||| || | |||| ||||||||| ||||| ||||| | |||| |||| |||| Sbjct 66406556 AGCACCAAATGGAGGGTGGACTCCTTCTGGATGTTGTAGTCAGCTAGGGTGCGGCCATCT 66406497 Query 34826 TCCAGTTGCTTTCCGGCGAAGATCAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCG 34885 |||| |||||||| || ||||||| | ||||||||| | || | || ||||| || Sbjct 66406496 TCCAACTGCTTTCCTGCAAAGATCAACCTCTGCTGGTCTGGGGGAATGCCTTCCTTATCC 66406437 Query 34886 TTTATTTTTTGTTTGACGGATGCTATCGATTCATTGGCCTCGACATCAACGGTTATGGTC 34945 | || || |||||| | || | || | ||||| |||| ||| || ||| Sbjct 66406436 TGGATCTTAGCCTTGACGTTGTCAATGGTGTCTGAGCTTTCGACCTCAAGGGTAATCGTC 66406377 Query 34946 TTTCCCGTGAGGGTCTTTACAAAGATCTGCAT 34977 || |||||||| ||||| || ||||||||||| Sbjct 66406376 TTACCCGTGAGAGTCTTCACGAAGATCTGCAT 66406345 Score = 111 bits (122), Expect = 1e-19 Identities = 162/229 (71%), Gaps = 0/229 (0%) Strand=Plus/Minus Query 34749 TTCCTCCCCTCAACCTCAGGACCAGGTGAATGGTGCTCTCCTTCTGAATGTTATAGTCCG 34808 |||||||||||| ||| || |||| ||| | ||| |||||| || ||||||||||||| Sbjct 66407257 TTCCTCCCCTCAGCCTAAGCACCAAGTGCAGGGTCGACTCCTTTTGGATGTTATAGTCCG 66407198 Query 34809 ATAGGCTGCGCTCATCGTCCAGTTGCTTTCCGGCGAAGATCAGTCGTTGCTGGTCTTGCG 34868 | |||| |||| || || ||||| || || || |||| | ||||||||| | | Sbjct 66407197 CCAAAGTGCGGCCATCCTCGAGCTGCTTGCCAGCAAAAATCAACCTCTGCTGGTCTGGGG 66407138 Query 34869 GCACCCCCTCCTTGTCGTTTATTTTTTGTTTGACGGATGCTATCGATTCATTGGCCTCGA 34928 | | ||||||||||| | || || ||||| | || | || | ||| | Sbjct 66407137 GAATACCCTCCTTGTCTTGGATCTTGGCCTTGACATTGTCAATGGTGTCGGAGCTCTCAA 66407078 Query 34929 CATCAACGGTTATGGTCTTTCCCGTGAGGGTCTTTACAAAGATCTGCAT 34977 | || | ||| ||||| || || || |||||||| |||||||| ||||| Sbjct 66407077 CCTCCAGGGTGATGGTTTTCCCGGTAAGGGTCTTCACAAAGATTTGCAT 66407029 Score = 109 bits (120), Expect = 4e-19 Identities = 155/216 (72%), Gaps = 8/216 (4%) Strand=Plus/Minus Query 34766 AGGACCAGGTGAATGGTGCTCTCCTTCTGAATGTTATAGTCCGATAGGCTGCGCTCATCG 34825 ||||| ||||| | |||| ||||||||| || || ||||| | ||| |||| |||| Sbjct 66407468 AGGACAAGGTGCAGGGTGGACTCCTTCTGGATATTGTAGTCAGCAAGGGTGCGGCCATCC 66407409 Query 34826 TCCAGTTGCTTTCCGGCGAAGATCAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCG 34885 || || ||||| || ||||| |||| | ||||||||| | || | |||||||||||| Sbjct 66407408 TCAAGCTGCTTACCAGCGAAAATCAACCTCTGCTGGTCTGGTGGGATCCCCTCCTTGTCC 66407349 Query 34886 TTTATTTTTTGTTTGACGGATGCTATCGAT----TCATTGGCCTCGACATCAACGGTTAT 34941 | || || ||| || || | ||||| ||| ||| || || | || || Sbjct 66407348 TGAATCTTAGCTTTCAC--AT--TGTCGATGGTGTCAGAACTCTCCACCTCCAAAGTGAT 66407293 Query 34942 GGTCTTTCCCGTGAGGGTCTTTACAAAGATCTGCAT 34977 |||||| || || | |||||| |||||||||||||| Sbjct 66407292 GGTCTTCCCGGTCAAGGTCTTCACAAAGATCTGCAT 66407257 >seq11 Length=56302525 Score = 105 bits (116), Expect = 4e-18 Identities = 153/216 (71%), Gaps = 0/216 (0%) Strand=Plus/Minus Query 34762 CCTCAGGACCAGGTGAATGGTGCTCTCCTTCTGAATGTTATAGTCCGATAGGCTGCGCTC 34821 ||||||||| || |||| || ||| ||||| ||||||||||| | ||| |||| | Sbjct 497916 CCTCAGGACAAGATGAAGAGTAGACTCTTTCTGGATGTTATAGTCTGCAAGGGTGCGGCC 497857 Query 34822 ATCGTCCAGTTGCTTTCCGGCGAAGATCAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTT 34881 ||| || || ||||| || || ||||| || | || || ||| | || | ||| ||||| Sbjct 497856 ATCCTCAAGCTGCTTACCAGCAAAGATGAGCCTCTGTTGATCTGGTGGGATCCCTTCCTT 497797 Query 34882 GTCGTTTATTTTTTGTTTGACGGATGCTATCGATTCATTGGCCTCGACATCAACGGTTAT 34941 ||| | ||| ||| ||| || | || | ||| | ||| || || | || || Sbjct 497796 GTCCTGTATCTTTGCTTTCACATTGTCAATAGTATCAGAGCTCTCCACCTCCAATGTGAT 497737 Query 34942 GGTCTTTCCCGTGAGGGTCTTTACAAAGATCTGCAT 34977 ||||| || || || ||||| |||||||||||||| Sbjct 497736 TGTCTTCCCAGTAAGAGTCTTCACAAAGATCTGCAT 497701 Score = 98.7 bits (108), Expect = 6e-16 Identities = 152/214 (71%), Gaps = 5/214 (2%) Strand=Plus/Plus Query 34766 AGGACCAGGTGAATGGTGCTCTCCTTCTGAATGTTATAGTCCGATAGGCTGCGCTCATCG 34825 || || || || | |||| ||| |||||||| || ||||| | ||| | | |||| Sbjct 487073 AGAACAAGATGTAAGGTGGACTCTTTCTGAATATTGTAGTCAGCCAGGGTCCTTCCATCC 487132 Query 34826 TCCAGTTGCTTTCCGGCGAAGATCAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCG 34885 || |||||||| |||| |||||||||| ||||||||| | || | ||| ||||| || Sbjct 487133 TCAAGTTGCTTGCCGGA-AAGATCAGTCTCTGCTGGTCTGGAGGAATCCCTTCCTTATCC 487191 Query 34886 TTTATTTTTTGTTTGACGGATGCTATCGATTCATTGGCCT--CGACATCAACGGTTATGG 34943 | ||||| || ||| | || | || || || | || |||| ||| |||| Sbjct 487192 TGAATTTTGGTCTTCACGTTGTCAATTGTATC--TGAACTTTCAACTTCAAGGGTGATGG 487249 Query 34944 TCTTTCCCGTGAGGGTCTTTACAAAGATCTGCAT 34977 ||||||| || || ||||| ||| |||||||||| Sbjct 487250 TCTTTCCAGTAAGTGTCTTGACAGAGATCTGCAT 487283 Score = 91.5 bits (100), Expect = 1e-13 Identities = 151/216 (70%), Gaps = 8/216 (4%) Strand=Plus/Minus Query 34766 AGGACCAGGTGAATGGTGCTCTCCTTCTGAATGTTATAGTCCGATAGGCTGCGCTCATCG 34825 ||||| || |||| ||| ||| || || ||||| || || | || | || |||| Sbjct 496544 AGGACAAGATGAAGGGTAGACTCTTTTTGGATGTTGTAATCAGCAAGTGTTCGGCCATCT 496485 Query 34826 TCCAGTTGCTTTCCGGCGAAGATCAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCG 34885 || || || || || || |||||||||| ||||| ||| | || | || |||||||| Sbjct 496484 TCAAGCTGTTTCCCAGCAAAGATCAGTCTCTGCTGATCTGGAGGAATGCCTTCCTTGTCT 496425 Query 34886 TTTATTTTTTGTTTGACGGATGCTATCGAT----TCATTGGCCTCGACATCAACGGTTAT 34941 | || || |||||| || |||| || ||| ||| || |||| || || Sbjct 496424 TGAATCTTAGCTTTGAC--AT--TATCAATGGTGTCAGAACTCTCAACCTCAAGAGTGAT 496369 Query 34942 GGTCTTTCCCGTGAGGGTCTTTACAAAGATCTGCAT 34977 ||||||||| ||||| ||||| ||||| |||||||| Sbjct 496368 GGTCTTTCCGGTGAGTGTCTTAACAAATATCTGCAT 496333 Score = 86.0 bits (94), Expect = 4e-12 Identities = 155/227 (68%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 34751 CCTCCCCTCAACCTCAGGACCAGGTGAATGGTGCTCTCCTTCTGAATGTTATAGTCCGAT 34810 ||||| ||||| | || ||||| || | || ||||||||| ||||| ||||| | Sbjct 497699 CCTCCTCTCAAACGCAACACCAGATGGAGAGTTGACTCCTTCTGGATGTTGTAGTCTGCA 497640 Query 34811 AGGCTGCGCTCATCGTCCAGTTGCTTTCCGGCGAAGATCAGTCGTTGCTGGTCTTGCGGC 34870 || | | | |||| || ||||| || || || ||||||| || || |||||| | || Sbjct 497639 AGAGTCCTCCCATCCTCAAGTTGTTTACCAGCAAAGATCAAACGCTGTTGGTCTGGGGGA 497580 Query 34871 ACCCCCTCCTTGTCGTTTATTTTTTGTTTGACGGATGCTATCGATTCATTGGCCTCGACA 34930 | ||||||||||| | || ||| ||| || | || | || ||| || Sbjct 497579 ATACCCTCCTTGTCTTGAATCTTTGCTTTCACATTGTCAATGGTATCTGAACTCTCAACC 497520 Query 34931 TCAACGGTTATGGTCTTTCCCGTGAGGGTCTTTACAAAGATCTGCAT 34977 || | || || ||||| || || | ||||| |||||||||||||| Sbjct 497519 TCCAATGTGATTGTCTTCCCAGTCAAAGTCTTCACAAAGATCTGCAT 497473 >seq1 Length=98543444 Score = 100 bits (110), Expect = 2e-16 Identities = 141/196 (72%), Gaps = 8/196 (4%) Strand=Plus/Minus Query 34786 CTCCTTCTGAATGTTATAGTCCGATAGGCTGCGCTCATCGTCCAGTTGCTTTCCGGCGAA 34845 ||||||||| ||||| ||||| | || | || |||| || || |||||||||||||| Sbjct 57604299 CTCCTTCTGGATGTTGTAGTCGGCAAGAGTACGACCATCCTCAAGCTGCTTTCCGGCGAA 57604240 Query 34846 GATCAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGTTTATTTTTTGTTTGACGGA 34905 |||| || ||||||||| | || | ||| |||||||| | || || ||| || | Sbjct 57604239 AATCAAACGCTGCTGGTCTGGGGGAATCCCTTCCTTGTCCTGGATCTTGGCTTTCAC--A 57604182 Query 34906 TGCTATCGAT----TCATTGGCCTCGACATCAACGGTTATGGTCTTTCCCGTGAGGGTCT 34961 | | ||||| || | ||| || || | ||| || ||||| ||||| ||||| | Sbjct 57604181 T--TGTCGATGGTGTCGGAAGACTCAACCTCTAGGGTGATCGTCTTCCCCGTTAGGGTTT 57604124 Query 34962 TTACAAAGATCTGCAT 34977 | || ||||||||||| Sbjct 57604123 TCACGAAGATCTGCAT 57604108 Score = 96.9 bits (106), Expect = 2e-15 Identities = 134/188 (71%), Gaps = 0/188 (0%) Strand=Plus/Minus Query 34790 TTCTGAATGTTATAGTCCGATAGGCTGCGCTCATCGTCCAGTTGCTTTCCGGCGAAGATC 34849 ||||||||||| || || | ||| | || |||| || || |||||||||||||||||| Sbjct 87380388 TTCTGAATGTTGTAATCAGCTAGAGTACGTCCATCTTCGAGCTGCTTTCCGGCGAAGATC 87380329 Query 34850 AGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGTTTATTTTTTGTTTGACGGATGCT 34909 | ||| |||||||| | || | || |||||||| | || || |||||| | Sbjct 87380328 AATCGCTGCTGGTCCGGTGGAATACCTTCCTTGTCTTGAATCTTAGCTTTGACATTGTCA 87380269 Query 34910 ATCGATTCATTGGCCTCGACATCAACGGTTATGGTCTTTCCCGTGAGGGTCTTTACAAAG 34969 || | || | | || || |||| || || ||||| ||||| || || || || ||| Sbjct 87380268 ATAGTGTCGCTCGATTCAACTTCAAGCGTGATCGTCTTCCCCGTAAGAGTTTTCACGAAG 87380209 Query 34970 ATCTGCAT 34977 |||||||| Sbjct 87380208 ATCTGCAT 87380201 >seq10 Length=65527505 Score = 96.9 bits (106), Expect = 2e-15 Identities = 149/213 (70%), Gaps = 0/213 (0%) Strand=Plus/Plus Query 34765 CAGGACCAGGTGAATGGTGCTCTCCTTCTGAATGTTATAGTCCGATAGGCTGCGCTCATC 34824 |||||||| ||||| ||| ||||||||| ||||| || || | ||| | || | || Sbjct 1071823 CAGGACCAAGTGAAGGGTTGACTCCTTCTGGATGTTGTAATCAGCAAGGGTACGGCCGTC 1071882 Query 34825 GTCCAGTTGCTTTCCGGCGAAGATCAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTC 34884 || |||||||||||||| ||||||| | ||||||||| | || | || || ||||| Sbjct 1071883 CTCAAGTTGCTTTCCGGCAAAGATCAACCTCTGCTGGTCTGGTGGAATACCTTCTTTGTC 1071942 Query 34885 GTTTATTTTTTGTTTGACGGATGCTATCGATTCATTGGCCTCGACATCAACGGTTATGGT 34944 | ||||| || || | || | ||| || || |||| ||| || || Sbjct 1071943 CTGAATTTTGGCCTTAACATTGTCAATGGTGTCAGAACTTTCCACCTCAAGGGTGATTGT 1072002 Query 34945 CTTTCCCGTGAGGGTCTTTACAAAGATCTGCAT 34977 ||| || || | |||||| |||||||| ||||| Sbjct 1072003 CTTGCCAGTCAAGGTCTTCACAAAGATTTGCAT 1072035 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 325680316296755