Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Solanum_20lycopersicum_20[refseq_20GCF_5F000188115.3_202014-10-16]
3,145 sequences; 823,786,402 total letters
Query= NC_023177.1
Length=124688
Score E
Sequences producing significant alignments: (Bits) Value
seq11 95.1 1e-14
seq10 89.7 4e-13
seq7 84.2 2e-11
>seq11
Length=56302525
Score = 95.1 bits (104), Expect = 1e-14
Identities = 157/227 (69%), Gaps = 0/227 (0%)
Strand=Plus/Plus
Query 107556 ATGCAAATTTTTGTCAAAACTTTAACAGGCAAAACCATTACCGTCGAAACGGAGGCTGGC 107615
||||||||||||||||| ||||| || || || || ||||| | || ||| |
Sbjct 497245 ATGCAAATTTTTGTCAAGACTTTGACTGGGAAGACAATTACATTGGAGGTTGAGAGTTCA 497304
Query 107616 GATACTGTCGGCCAGGTAAAACAAAAGATTGCCGATAAAGAAGGCGTGCCCGTGGATCAG 107675
||||| | | | | || ||| ||||||| || || || || | ||| || ||
Sbjct 497305 GATACCATTGACAATGTGAAAGCAAAGATTCAAGACAAGGAGGGTATTCCCCCAGACCAA 497364
Query 107676 CAGAGACTTATTTATGCGGGTAAACAGCTGGAGGACGCCAAAACAATGGCGGACTACAAC 107735
||| | | || | ||| |||||||| || ||||||| | || | || |||||||||
Sbjct 497365 CAGCGTTTGATCTTTGCTGGTAAACAACTTGAGGACGGGAGGACTCTTGCAGACTACAAC 497424
Query 107736 ATTCAAAAGGAGTCTACGTTGCACATGGTGTTGAGATTGCGAGGGGG 107782
|| || |||||||| || | || |||||||| | ||| |||| ||
Sbjct 497425 ATCCAGAAGGAGTCAACTCTCCATCTGGTGTTGCGTTTGAGAGGAGG 497471
>seq10
Length=65527505
Score = 89.7 bits (98), Expect = 4e-13
Identities = 142/204 (70%), Gaps = 0/204 (0%)
Strand=Plus/Minus
Query 107556 ATGCAAATTTTTGTCAAAACTTTAACAGGCAAAACCATTACCGTCGAAACGGAGGCTGGC 107615
||||| |||||||| || || || || || |||||||| || | || |||| |
Sbjct 1071579 ATGCAGATTTTTGTGAAGACCTTGACTGGGAAAACCATAACTTTGGAGGTGGAGAGTTCT 1071520
Query 107616 GATACTGTCGGCCAGGTAAAACAAAAGATTGCCGATAAAGAAGGCGTGCCCGTGGATCAG 107675
||||| | | | | || || || ||| || || || || | || ||| |||
Sbjct 1071519 GATACCATTGACAATGTGAAGGCTAAAATTCAGGACAAGGAGGGAATCCCACCGGACCAG 1071460
Query 107676 CAGAGACTTATTTATGCGGGTAAACAGCTGGAGGACGCCAAAACAATGGCGGACTACAAC 107735
|||||||| || | ||| || || || || || || | | || ||||||||||||||
Sbjct 1071459 CAGAGACTGATCTTTGCAGGGAAGCAACTTGAAGATGGAAGGACTCTGGCGGACTACAAC 1071400
Query 107736 ATTCAAAAGGAGTCTACGTTGCAC 107759
|| |||||||||||||| ||||||
Sbjct 1071399 ATCCAAAAGGAGTCTACTTTGCAC 1071376
>seq7
Length=68045021
Score = 84.2 bits (92), Expect = 2e-11
Identities = 158/230 (69%), Gaps = 2/230 (1%)
Strand=Plus/Plus
Query 107556 ATGCAAATTTTTGTCAAAACTTTAACAGGCAAAACCATTACCGTCGAAACGGAG-GCTGG 107614
|||||||| ||||| || || | || || |||||||| ||| | || ||| |||
Sbjct 66407029 ATGCAAATCTTTGTGAAGACCCTTACCGGGAAAACCATCACCCTGGAGGTTGAGAGCTC- 66407087
Query 107615 CGATACTGTCGGCCAGGTAAAACAAAAGATTGCCGATAAAGAAGGCGTGCCCGTGGATCA 107674
||| || | | | | || || ||||| || || || || | ||| || ||
Sbjct 66407088 CGACACCATTGACAATGTCAAGGCCAAGATCCAAGACAAGGAGGGTATTCCCCCAGACCA 66407147
Query 107675 GCAGAGACTTATTTATGCGGGTAAACAGCTGGAGGACGCCAAAACAATGGCGGACTACAA 107734
|||||| | |||| ||| || || ||||| ||||| | | || |||||||||| ||
Sbjct 66407148 GCAGAGGTTGATTTTTGCTGGCAAGCAGCTCGAGGATGGCCGCACTTTGGCGGACTATAA 66407207
Query 107735 CATTCAAAAGGAGTCTACGTTGCACATGGTGTTGAGATTGCGAGGGGGAA 107784
||| ||||||||||| || ||||| ||||| | || || | || ||||
Sbjct 66407208 CATCCAAAAGGAGTCGACCCTGCACTTGGTGCTTAGGCTGAGGGGAGGAA 66407257
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 398861511176905
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |