Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Solanum_20lycopersicum_20[refseq_20GCF_5F000188115.3_202014-10-16] 3,145 sequences; 823,786,402 total letters Query= NC_023588.1 Length=33525 Score E Sequences producing significant alignments: (Bits) Value seq1141 266 7e-67 >seq1141 Length=3271 Score = 266 bits (294), Expect = 7e-67 Identities = 554/819 (68%), Gaps = 12/819 (1%) Strand=Plus/Minus Query 3350 CGGGTCGTAGCCGATCCACACAGCGCGGTCGCCGTA-GGGCCGGACGGCAAACGGCTTGT 3408 |||||||||||| | ||| || | || | ||| | |||| || || | || ||| Sbjct 3229 CGGGTCGTAGCCCACCCATACCTCACGATTACCGAAAGGGCGGGGCGACCAATGGCG--- 3173 Query 3409 AGTCGTCCGCCCACTCGACCCAGCTATCGACCTGACAGGGCTGCAGCATCGTGAGCGGGA 3468 | |||| ||||| | ||||||| |||||| | | || ||||||| ||||||| Sbjct 3172 -GAAGTCCTCCCACACCTCCCAGCTGTCGACCATGCCGCGCATGAGCATCGACAGCGGGA 3114 Query 3469 ATACGCTGGCGCTGTCATCCACGAACTCGCACATCAGCAGATTGGCGAATTCCTCGGCGC 3528 | || ||| ||||||| | ||| ||||||||||||| || |||| ||| | ||| Sbjct 3113 AGACAGAGGCCGTGTCATCGATGAAGCCGCACATCAGCAGGTTCTCGAAGTCCGCATCGC 3054 Query 3529 TGTAGTCGCGGCGCAGTTCCTCGATATCGAACAGGTCACAGCCACGGCCGGCCGCATCAA 3588 |||| || | |||| | |||| |||||||||| ||||||| | || || || Sbjct 3053 TGTACTCCAGCCGCAACTGGTCGAGGTCGAACAGGTTGCAGCCACCGGCGATGGCGTCTT 2994 Query 3589 GAACGGTCACGATCTGGCGCCAGATCGCGTCCTCGCAACGCCGGCCACCCATCAGGCGCG 3648 || || || ||||| ||| ||||| |||| |||||||| || || | || Sbjct 2993 CCACCGTGACAATCTGTTTCCACTGACCGTCCGCGCACCGCCGGCCGTCCTGCAAGTTCG 2934 Query 3649 CGTGGCTCACATCCAGCTGGATCTGCTGGGACACCGAGCGTCCCTTGTTGAAGCGCTCGC 3708 ||||||| || || | |||| || | | | || || ||||| || ||| Sbjct 2933 CGTGGCTGACGTCAACGCGGATGTGGTCTTCCTTCTTCCGCCCGCGATTGAACAGCGCGC 2874 Query 3709 CGGTCCAGAAGTCGAAGGCTTCATGCGCCATGGTGGACGGCGTGCTGAAGTAGGTCTTGC 3768 | | |||||| | | ||||| || || | | | || ||||| ||| || |||| | Sbjct 2873 CAGACCAGAACGGGTACGCTTCGTGGGCAAGGCTCGAAGGCGTCGAGAAATAAGTCTGCC 2814 Query 3769 GCCACTTCTTGTGCATCGCCATGCCGCTGGCGACCTTGTTCAGCTGGTTGAAACCGTAGG 3828 |||||||| ||| || ||||| ||| ||| |||||| ||||| | ||| | | | Sbjct 2813 GCCACTTCGAGTGGATGGCCATCCCGGAGGCCACCTTGCGCAGCTCTTGGAAGCGCTGGA 2754 Query 3829 TCCAGAAGAACTCGTCAAAGTAGAAATTGCCGTGGTAGCCCTGTGCGGTGCGGGCGTTGG 3888 |||||||| ||||||| | |||| |||||||| |||| ||| |||||||| ||||| | Sbjct 2753 TCCAGAAGTACTCGTCCAGATAGAGGTTGCCGTGATAGCTCTGCGCGGTGCGTGCGTTTG 2694 Query 3889 TGCCCAGGAAGAACAGCTCGGCGCCATTGGCCAGGGTGATCGGGTCGCCGGTCAGGT-CA 3947 |||| ||||| ||||| ||||| || | || ||||| ||||| |||| | || Sbjct 2693 TGCCGAGGAAATACAGCGTCGCGCCGTTCGGCAACACCATCGGCTCGCCCTTCAGCTCCA 2634 Query 3948 CGGTCCAGCA-CCTCACGCACGAAGCCCCGCATATAGCCGAGGAAGATGTGCGCTTGGCT 4006 || || ||| | || | |||| || || ||| | ||| || || Sbjct 2633 CG--CCGGCAGCATCCTTCGCGAACTGGATGATGTATTGCTTGAAAACGTGGGCCTGCGC 2576 Query 4007 CTTGGATGCGCTCAGGAAAATCTGGTTGCGGCCGGTGGTCAGCGCGTCGATCAGCGCCTC 4066 |||| || || ||||||||| ||||| || ||||||| ||| || || | ||||| Sbjct 2575 CTTGCTGGCCGACAAGAAAATCTGATTGCGCCCCGTGGTCAACGCATCAATGAAGGCCTC 2516 Query 4067 GCGGGCGAAGTAGTAGGTGGCACCGATCTGGCGCGACTTCAGGATGATGCGCGTGCGTTC 4126 || ||||| || | ||||||||||||||||| |||||| | |||| | || || Sbjct 2515 CCGTGCGAAATACCACGTGGCACCGATCTGGCGGCTCTTCAGAACATTGCGGATACGCTC 2456 Query 4127 GTTG---CCCGCCCGGTACCAATCGCGCTGGTAGTCGAA 4162 || ||||| |||||| | |||||||||||||| Sbjct 2455 TCTGAGACCCGCTTCGTACCAGGCACGCTGGTAGTCGAA 2417 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 107154397968630