Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Solanum_20lycopersicum_20[refseq_20GCF_5F000188115.3_202014-10-16] 3,145 sequences; 823,786,402 total letters Query= NC_023681.1 Length=152710 Score E Sequences producing significant alignments: (Bits) Value seq11 107 2e-18 seq10 87.8 2e-12 >seq11 Length=56302525 Score = 107 bits (118), Expect = 2e-18 Identities = 160/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 137185 CCTCCTCGTAAACGCAAAACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATCGCTC 137244 || || |||| ||| | || | ||||| ||||| |||||||| ||||||||||| Sbjct 496559 CCACCACGTAGACGGAGGACAAGATGAAGGGTAGACTCTTTTTGGATGTTGTAATCAGCA 496500 Query 137245 ATTGTGCTCGAGTCTTCGAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGT 137304 | ||| | ||||| || ||||| |||||| ||||||| | |||||||| ||||| Sbjct 496499 AGTGTTCGGCCATCTTCAAGCTGTTTCCCAGCAAAGATCAGTCTCTGCTGATCTGGAGGA 496440 Query 137305 ATGCCTTCTTTGTCGGTAATTTTTTGTTTTAGCTGTTCCACCGTGTCTGTGGGTTCTACT 137364 |||||||| ||||| ||| || ||| | | || | ||||| | || || Sbjct 496439 ATGCCTTCCTTGTCTTGAATCTTAGCTTTGACATTATCAATGGTGTCAGAACTCTCAACC 496380 Query 137365 TCAACAGTCACCGTCTTGCCGGTCAATGTTTTTACGAATATTTGCAT 137411 |||| ||| | ||||| ||||| | ||| || || ||||| ||||| Sbjct 496379 TCAAGAGTGATGGTCTTTCCGGTGAGTGTCTTAACAAATATCTGCAT 496333 Score = 96.9 bits (106), Expect = 3e-15 Identities = 143/203 (70%), Gaps = 0/203 (0%) Strand=Plus/Minus Query 137209 TGAATTGTAGATTCTTTTTGTATGTTGTAATCGCTCATTGTGCTCGAGTCTTCGAGTTGT 137268 |||| || || || ||||| ||||||||||| | ||| | ||||| || ||| Sbjct 496763 TGAAGGGTGGACTCCTTTTGGATGTTGTAATCAGCAAGTGTTCGGCCATCTTCAAGCTGT 496704 Query 137269 TTACCAGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCGGTAATTTTT 137328 || |||||| ||||||| | ||||| || || || || ||||| ||||| |||||| Sbjct 496703 TTCCCAGCAAAGATCAGCCTCTGCTGGTCTGGGGGAATACCTTCCTTGTCTTGAATTTTA 496644 Query 137329 TGTTTTAGCTGTTCCACCGTGTCTGTGGGTTCTACTTCAACAGTCACCGTCTTGCCGGTC 137388 ||| | | || | ||||||| | || || |||| ||| | ||||| |||||| Sbjct 496643 GCTTTGACATTATCGATGGTGTCTGAGCTCTCGACCTCAAGAGTTATAGTCTTTCCGGTC 496584 Query 137389 AATGTTTTTACGAATATTTGCAT 137411 | ||||| || || |||||||| Sbjct 496583 AGAGTTTTAACAAAGATTTGCAT 496561 Score = 89.7 bits (98), Expect = 5e-13 Identities = 156/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 137185 CCTCCTCGTAAACGCAAAACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATCGCTC 137244 ||||||| |||||||| || | ||| | || || || || || |||||||| || Sbjct 497471 CCTCCTCTCAAACGCAACACCAGATGGAGAGTTGACTCCTTCTGGATGTTGTAGTCTGCA 497412 Query 137245 ATTGTGCTCGAGTCTTCGAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGT 137304 | || ||| ||| || ||||||||||||||| |||||| ||| || || || || || Sbjct 497411 AGAGTCCTCCCGTCCTCAAGTTGTTTACCAGCAAAGATCAAACGCTGTTGGTCTGGGGGA 497352 Query 137305 ATGCCTTCTTTGTCGGTAATTTTTTGTTTTAGCTGTTCCACCGTGTCTGTGGGTTCTACT 137364 || || || ||||| ||| ||| ||| | | || | || |||| || || Sbjct 497351 ATACCCTCCTTGTCTTGAATCTTTGCTTTCACATTGTCAATGGTATCTGAACTCTCAACC 497292 Query 137365 TCAACAGTCACCGTCTTGCCGGTCAATGTTTTTACGAATATTTGCAT 137411 || | || | ||||| || ||||| || || || || |||||||| Sbjct 497291 TCCAATGTAATTGTCTTCCCAGTCAAAGTCTTGACAAAAATTTGCAT 497245 Score = 84.2 bits (92), Expect = 2e-11 Identities = 140/199 (70%), Gaps = 4/199 (2%) Strand=Plus/Minus Query 137215 GTAGATTCTTTTTGTATGTTGTAATCGCTCATTGTGCTCGAGTCTTCGAGTTGTTTACCA 137274 || |||||||| || ||||||||||| || || || || || ||||| || ||| Sbjct 497213 GTTGATTCTTTCTGAATGTTGTAATCTGCCAACGTCCTTCCATCCTCAAGTTGCTTTCCA 497154 Query 137275 GCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTC-GGTAATTTTTTGTTT 137333 ||| |||||| | ||||| || ||||| || || || ||||| ||| | |||| || Sbjct 497153 GCAAAGATCAATCTCTGCTGGTCTGGAGGAATACCCTCCTTGTCTTGTA--TCTTTGCTT 497096 Query 137334 TAGC-TGTTCCACCGTGTCTGTGGGTTCTACTTCAACAGTCACCGTCTTGCCGGTCAATG 137392 || | | || | || |||| || || || | ||| | ||||| || ||||||| Sbjct 497095 TAACATTGTCGATAGTATCTGAACTCTCAACCTCCAAAGTAATTGTCTTCCCTGTCAATG 497036 Query 137393 TTTTTACGAATATTTGCAT 137411 | || || ||||||||||| Sbjct 497035 TCTTGACAAATATTTGCAT 497017 >seq10 Length=65527505 Score = 87.8 bits (96), Expect = 2e-12 Identities = 90/117 (77%), Gaps = 2/117 (2%) Strand=Plus/Plus Query 137209 TGAATTGTAGATTCTTTTTGTATGTTGTAATCGCTCATTGTGCTCGAGTCTTCGAGTTGT 137268 |||| || |||||||| || ||||||||||| || || || ||||| | |||| Sbjct 463825 TGAAGAGTTGATTCTTTCTGAATGTTGTAATCAGCCAGGGTTCTACCATCTTCCAATTGT 463884 Query 137269 TTACCAGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTC--GGTAA 137323 || |||||| | ||||| | |||||||| ||||||||||||||||| || ||||| Sbjct 463885 TTTCCAGCAAAAATCAGTCTCTGCTGATCAGGAGGTATGCCTTCTTTATCCTGGTAA 463941 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 488524794114000