Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Solanum_20lycopersicum_20[refseq_20GCF_5F000188115.3_202014-10-16] 3,145 sequences; 823,786,402 total letters Query= NC_024625.1 Length=151109 Score E Sequences producing significant alignments: (Bits) Value seq7 123 2e-23 seq12 113 4e-20 seq10 107 2e-18 seq1 107 2e-18 seq11 87.8 2e-12 >seq7 Length=68045021 Score = 123 bits (136), Expect = 2e-23 Identities = 152/205 (74%), Gaps = 2/205 (1%) Strand=Plus/Minus Query 133457 ATGTATGGTGGACTCTTTCTGTATATTGTAATCGCCCATCGTG-GACGAGTCCTCGAGCT 133515 ||| | ||| ||||| ||||| || ||||| || ||| ||| ||| | |||||||||| Sbjct 66406776 ATGGAGGGTAGACTCCTTCTGGATGTTGTAGTCAGCCAGGGTGCGACCA-TCCTCGAGCT 66406718 Query 133516 GCTTGCCCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCT 133575 |||| || ||| | || | || ||||||||| || ||||| |||||||| || ||||| Sbjct 66406717 GCTTTCCAGCGAAGATCAACCTCTGCTGGTCTGGGGGGATCCCTTCCTTATCCTGGATCT 66406658 Query 133576 TTTGCTTGAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGG 133635 | ||| | | |||| ||||||| | ||||| || | |||| ||| || |||| Sbjct 66406657 TAGCCTTCACGTTGTCAATGGTGTCGGAGCTTTCCACCTCCAAAGTGATGGTCTTTCCGG 66406598 Query 133636 TCAGAGTTTTTACGAAAATCTGCAT 133660 | ||||| || ||||| |||||||| Sbjct 66406597 TAAGAGTCTTAACGAAGATCTGCAT 66406573 Score = 114 bits (126), Expect = 1e-20 Identities = 144/198 (73%), Gaps = 0/198 (0%) Strand=Plus/Minus Query 133463 GGTGGACTCTTTCTGTATATTGTAATCGCCCATCGTGGACGAGTCCTCGAGCTGCTTGCC 133522 ||| ||||| ||||| || ||||| ||| | | ||| ||||||||||||||| || Sbjct 66406998 GGTCGACTCCTTCTGGATGTTGTAGTCGGCAAGGGTGCGGCCGTCCTCGAGCTGCTTACC 66406939 Query 133523 CGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCTTTTGCTT 133582 ||| |||| | || ||||||||| | ||| || || |||||||| |||||| ||| Sbjct 66406938 AGCGAAAATCAACCTCTGCTGGTCTGAAGGAATTCCCTCCTTGTCCTGGATCTTAGCCTT 66406879 Query 133583 GAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGGTCAGAGT 133642 | | |||| ||||||| | ||||| || | |||| ||| || ||||| || || Sbjct 66406878 AACATTATCAATGGTGTCGGAGCTTTCCACCTCCAAAGTGATGGTCTTTCCGGTGAGGGT 66406819 Query 133643 TTTTACGAAAATCTGCAT 133660 || || ||||||||||| Sbjct 66406818 CTTAACAAAAATCTGCAT 66406801 Score = 109 bits (120), Expect = 5e-19 Identities = 150/207 (72%), Gaps = 2/207 (1%) Strand=Plus/Minus Query 133455 AAATGTATGGTGGACTCTTTCTGTATATTGTAATCGCCCATCGTG-GACGAGTCCTCGAG 133513 || || | ||| ||||| || || || || || || ||| ||| | | | |||||||| Sbjct 66407234 AAGTGCAGGGTCGACTCCTTTTGGATGTTATAGTCCGCCAAAGTGCGGCCA-TCCTCGAG 66407176 Query 133514 CTGCTTGCCCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGAT 133573 ||||||||| || |||| | || ||||||||| || || || || |||||||| ||| Sbjct 66407175 CTGCTTGCCAGCAAAAATCAACCTCTGCTGGTCTGGGGGAATACCCTCCTTGTCTTGGAT 66407116 Query 133574 CTTTTGCTTGAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCC 133633 ||| ||||| | |||| ||||||| | ||| || || | ||||| |||||| || Sbjct 66407115 CTTGGCCTTGACATTGTCAATGGTGTCGGAGCTCTCAACCTCCAGGGTGATGGTTTTCCC 66407056 Query 133634 GGTCAGAGTTTTTACGAAAATCTGCAT 133660 ||| || || || || || || ||||| Sbjct 66407055 GGTAAGGGTCTTCACAAAGATTTGCAT 66407029 Score = 91.5 bits (100), Expect = 1e-13 Identities = 146/207 (71%), Gaps = 2/207 (1%) Strand=Plus/Minus Query 133455 AAATGTATGGTGGACTCTTTCTGTATATTGTAATCGCCCATCGTG-GACGAGTCCTCGAG 133513 ||||| | ||||||||| ||||| || ||||| || | | ||| | | | || || | Sbjct 66406550 AAATGGAGGGTGGACTCCTTCTGGATGTTGTAGTCAGCTAGGGTGCGGCCA-TCTTCCAA 66406492 Query 133514 CTGCTTGCCCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGAT 133573 |||||| || || | || | || ||||||||| || || ||||||||||| || ||| Sbjct 66406491 CTGCTTTCCTGCAAAGATCAACCTCTGCTGGTCTGGGGGAATGCCTTCCTTATCCTGGAT 66406432 Query 133574 CTTTTGCTTGAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCC 133633 ||| ||||| | |||| ||||| | | || || || | ||| | || || || Sbjct 66406431 CTTAGCCTTGACGTTGTCAATGGTGTCTGAGCTTTCGACCTCAAGGGTAATCGTCTTACC 66406372 Query 133634 GGTCAGAGTTTTTACGAAAATCTGCAT 133660 || ||||| || ||||| |||||||| Sbjct 66406371 CGTGAGAGTCTTCACGAAGATCTGCAT 66406345 >seq12 Length=67145203 Score = 113 bits (124), Expect = 4e-20 Identities = 146/199 (73%), Gaps = 2/199 (1%) Strand=Plus/Plus Query 133463 GGTGGACTCTTTCTGTATATTGTAATCGCCCATCGTG-GACGAGTCCTCGAGCTGCTTGC 133521 ||||||||| ||||| || ||||| || | | ||| | | | |||||||||||||| | Sbjct 66287170 GGTGGACTCCTTCTGGATGTTGTAGTCAGCTAGCGTTCGGCCA-TCCTCGAGCTGCTTAC 66287228 Query 133522 CCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCTTTTGCT 133581 | ||| |||| | ||||||||||| || || |||||||||||||| ||||| || Sbjct 66287229 CGGCGAAAATCAATCGCTGCTGGTCTGGTGGAATGCCTTCCTTGTCTTGAATCTTAGCCT 66287288 Query 133582 TGAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGGTCAGAG 133641 | | | |||| ||||| | | ||| || || | ||| | ||| ||||| ||||| | Sbjct 66287289 TAACATTGTCAATGGTGTCTGATGACTCTACCTCCAAGGTAATGGTCTTGCCCGTCAGGG 66287348 Query 133642 TTTTTACGAAAATCTGCAT 133660 | || || || |||||||| Sbjct 66287349 TCTTCACAAAGATCTGCAT 66287367 Score = 95.1 bits (104), Expect = 1e-14 Identities = 142/199 (71%), Gaps = 2/199 (1%) Strand=Plus/Minus Query 133463 GGTGGACTCTTTCTGTATATTGTAATCGCCCATCGTG-GACGAGTCCTCGAGCTGCTTGC 133521 |||||| || ||||| || ||||| || | | ||| | | | ||||| |||||||| | Sbjct 66338173 GGTGGATTCCTTCTGGATGTTGTAGTCAGCTAGCGTTCGGCCA-TCCTCAAGCTGCTTTC 66338115 Query 133522 CCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCTTTTGCT 133581 ||||| |||| | || ||||||||| || || |||||||||||||| ||||| || Sbjct 66338114 CCGCGAAAATCAACCTCTGCTGGTCTGGTGGAATGCCTTCCTTGTCCTGAATCTTAGCCT 66338055 Query 133582 TGAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGGTCAGAG 133641 | | | |||| || || | | ||| || || | ||| | || ||||| || || | Sbjct 66338054 TAACATTGTCAATGGTATCCGATGACTCTACCTCTAAGGTAATAGTCTTGCCCGTTAGGG 66337995 Query 133642 TTTTTACGAAAATCTGCAT 133660 | || || || |||||||| Sbjct 66337994 TCTTCACAAAGATCTGCAT 66337976 >seq10 Length=65527505 Score = 107 bits (118), Expect = 2e-18 Identities = 148/207 (71%), Gaps = 0/207 (0%) Strand=Plus/Plus Query 133455 AAATGTATGGTGGACTCTTTCTGTATATTGTAATCGCCCATCGTGGACGAGTCCTCGAGC 133514 || || | ||| || || ||||| || |||||||| | | || |||||| ||| Sbjct 1072286 AAGTGAAGGGTTGATTCCTTCTGGATGTTGTAATCAGCAAGGGTCCTGCCGTCCTCAAGC 1072345 Query 133515 TGCTTGCCCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATC 133574 ||||||||||| | || | || |||||||| || || |||||||||||||| |||| Sbjct 1072346 TGCTTGCCCGCAAAGATCAACCTTTGCTGGTCTGGGGGAATGCCTTCCTTGTCTTGGATC 1072405 Query 133575 TTTTGCTTGAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCG 133634 || ||| | | |||| ||||| | | || || || | ||||| ||| || || Sbjct 1072406 TTAGCCTTAACATTGTCAATGGTGTCAGAGCTTTCAACCTCAAGGGTGATGGTCTTTCCT 1072465 Query 133635 GTCAGAGTTTTTACGAAAATCTGCATG 133661 |||| |||||| |||||||| |||||| Sbjct 1072466 GTCAAAGTTTTCACGAAAATTTGCATG 1072492 Score = 105 bits (116), Expect = 6e-18 Identities = 147/206 (71%), Gaps = 0/206 (0%) Strand=Plus/Plus Query 133455 AAATGTATGGTGGACTCTTTCTGTATATTGTAATCGCCCATCGTGGACGAGTCCTCGAGC 133514 || || | ||| ||||| ||||| || |||||||| | | || |||||| ||| Sbjct 1072058 AAGTGAAGGGTTGACTCCTTCTGGATGTTGTAATCAGCAAGGGTCCTGCCGTCCTCAAGC 1072117 Query 133515 TGCTTGCCCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATC 133574 ||||||||||| | || | || |||||||| || || |||||||||||||| |||| Sbjct 1072118 TGCTTGCCCGCAAAGATCAACCTTTGCTGGTCTGGGGGAATGCCTTCCTTGTCTTGGATC 1072177 Query 133575 TTTTGCTTGAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCG 133634 || ||| | | |||| ||||||| | || || || | ||||| ||| || || Sbjct 1072178 TTAGCCTTAACATTGTCAATGGTGTCGGAGCTTTCAACCTCAAGGGTGATGGTCTTTCCA 1072237 Query 133635 GTCAGAGTTTTTACGAAAATCTGCAT 133660 |||| ||| || || ||||| ||||| Sbjct 1072238 GTCAAAGTCTTCACAAAAATTTGCAT 1072263 Score = 105 bits (116), Expect = 6e-18 Identities = 146/200 (73%), Gaps = 6/200 (3%) Strand=Plus/Plus Query 133464 GTGGACTCTTTCTGTATATTGTAATCGCCCATCGTGGACGA--GTCCTCGAGCTGCTTGC 133521 || ||||||||||| || |||||||| | | || |||| ||| || |||||||| | Sbjct 1072523 GTTGACTCTTTCTGAATGTTGTAATCAGCTAGAGT--ACGACCGTCTTCAAGCTGCTTTC 1072580 Query 133522 CCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCTTTTGCT 133581 | || | || |||| ||||||||| || || |||||||||||||| |||| || ||| Sbjct 1072581 CTGCAAAGATCAGCCTCTGCTGGTCTGGGGGAATGCCTTCCTTGTCCTGGATC-TTGGCT 1072639 Query 133582 TGAGC-TGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGGTCAGA 133640 | | | | |||| ||||| | | ||||| || | ||||| || || || || || Sbjct 1072640 TTAACATTGTCAATGGTGTCTGAGCTTTCCACCTCAAGGGTGATAGTCTTTCCAGTGAGG 1072699 Query 133641 GTTTTTACGAAAATCTGCAT 133660 ||||| || || |||||||| Sbjct 1072700 GTTTTAACAAATATCTGCAT 1072719 >seq1 Length=98543444 Score = 107 bits (118), Expect = 2e-18 Identities = 144/198 (73%), Gaps = 2/198 (1%) Strand=Plus/Minus Query 133464 GTGGACTCTTTCTGTATATTGTAATCGCCCATCGTG-GACGAGTCCTCGAGCTGCTTGCC 133522 |||||||| ||||| || ||||| ||| | | || ||| | ||||| |||||||| || Sbjct 57604304 GTGGACTCCTTCTGGATGTTGTAGTCGGCAAGAGTACGACCA-TCCTCAAGCTGCTTTCC 57604246 Query 133523 CGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCTTTTGCTT 133582 ||| |||| | ||||||||||| || || || ||||||||||| |||||| || Sbjct 57604245 GGCGAAAATCAAACGCTGCTGGTCTGGGGGAATCCCTTCCTTGTCCTGGATCTTGGCTTT 57604186 Query 133583 GAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGGTCAGAGT 133642 | | || | ||||||| | ||| || || | ||||| || || || || || || Sbjct 57604185 CACATTGTCGATGGTGTCGGAAGACTCAACCTCTAGGGTGATCGTCTTCCCCGTTAGGGT 57604126 Query 133643 TTTTACGAAAATCTGCAT 133660 ||| ||||| |||||||| Sbjct 57604125 TTTCACGAAGATCTGCAT 57604108 Score = 89.7 bits (98), Expect = 5e-13 Identities = 136/191 (71%), Gaps = 2/191 (1%) Strand=Plus/Minus Query 133471 CTTTCTGTATATTGTAATCGCCCATCGTG-GACGAGTCCTCGAGCTGCTTGCCCGCGTAA 133529 ||||||| || |||||||| | | || | | | || ||||||||||| || ||| | Sbjct 87380390 CTTTCTGAATGTTGTAATCAGCTAGAGTACGTCCA-TCTTCGAGCTGCTTTCCGGCGAAG 87380332 Query 133530 ATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCTTTTGCTTGAGCTGC 133589 || | ||||||||||| || || || ||||||||||| ||||| |||| | Sbjct 87380331 ATCAATCGCTGCTGGTCCGGTGGAATACCTTCCTTGTCTTGAATCTTAGCTTTGACATTG 87380272 Query 133590 TCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGGTCAGAGTTTTTACG 133649 |||| |||||| | | || || || | |||| || || || || |||||||| ||| Sbjct 87380271 TCAATAGTGTCGCTCGATTCAACTTCAAGCGTGATCGTCTTCCCCGTAAGAGTTTTCACG 87380212 Query 133650 AAAATCTGCAT 133660 || |||||||| Sbjct 87380211 AAGATCTGCAT 87380201 >seq11 Length=56302525 Score = 87.8 bits (96), Expect = 2e-12 Identities = 144/205 (70%), Gaps = 2/205 (1%) Strand=Plus/Minus Query 133457 ATGTATGGTGGACTCTTTCTGTATATTGTAATCGCCCATCGTGGACGAGTCCTCGAGCTG 133516 ||||| ||| ||||||||||| |||||||| || ||| || ||||| || || Sbjct 496992 ATGTAAGGTAGACTCTTTCTGAATATTGTAGTCAGCCAGGGTCCTTCCATCCTCAAGTTG 496933 Query 133517 CTTGCCCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCTT 133576 |||||| || | || || | ||||||||| ||||| || |||||||| || ||| || Sbjct 496932 CTTGCCGGCAAAGATCAGTCTCTGCTGGTCTGGAGGAATCCCTTCCTTATC-CTGAATTT 496874 Query 133577 TTG-CTTGAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGG 133635 | | ||| | | |||| || |||| || || || | ||||| ||| || || | Sbjct 496873 TGGCCTTCACATTGTCAATAGTATCGGAACTTTCAACTTCAAGGGTGATGGTCTTTCCAG 496814 Query 133636 TCAGAGTTTTTACGAAAATCTGCAT 133660 | || || || || || |||||||| Sbjct 496813 TAAGTGTCTTGACAAAGATCTGCAT 496789 Score = 84.2 bits (92), Expect = 2e-11 Identities = 139/198 (70%), Gaps = 2/198 (1%) Strand=Plus/Minus Query 133464 GTGGACTCTTTCTGTATATTGTAATCGCCCATCGTG-GACGAGTCCTCGAGCTGCTTGCC 133522 || ||||||||||| || || || || | | ||| | | | ||||| |||||||| || Sbjct 497897 GTAGACTCTTTCTGGATGTTATAGTCTGCAAGGGTGCGGCCA-TCCTCAAGCTGCTTACC 497839 Query 133523 CGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCTTTTGCTT 133582 || | ||||||| ||| || || || ||||| ||||||||||| |||||| || Sbjct 497838 AGCAAAGATGAGCCTCTGTTGATCTGGTGGGATCCCTTCCTTGTCCTGTATCTTTGCTTT 497779 Query 133583 GAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGGTCAGAGT 133642 | | |||| || || | | |||||| || | |||| || || || || ||||| Sbjct 497778 CACATTGTCAATAGTATCAGAGCTCTCCACCTCCAATGTGATTGTCTTCCCAGTAAGAGT 497719 Query 133643 TTTTACGAAAATCTGCAT 133660 || || || |||||||| Sbjct 497718 CTTCACAAAGATCTGCAT 497701 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 483401795519800