Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Solanum_20lycopersicum_20[refseq_20GCF_5F000188115.3_202014-10-16] 3,145 sequences; 823,786,402 total letters Query= NC_025115.1 Length=40002 Score E Sequences producing significant alignments: (Bits) Value seq1141 749 0.0 >seq1141 Length=3271 Score = 749 bits (830), Expect = 0.0 Identities = 668/834 (80%), Gaps = 2/834 (0%) Strand=Plus/Minus Query 9248 TTGGGGTCGTAGCCGACCCACACCGGCCGGTTGCCGAACGGCCGCGGCG-CGAACGGCCG 9306 || ||||||||||| ||||| ||| || || ||||| || || |||| | || ||| | Sbjct 3231 TTCGGGTCGTAGCCCACCCATACCTCACGATTACCGAAAGGGCGGGGCGACCAATGGC-G 3173 Query 9307 GAAGTCCTCCCATACTTCCCAGGTGTCCACCATCCCGCGCATGAGCATCGAGAGCGGAAA 9366 |||||||||||| || |||||| |||| ||||| ||||||||||||||||| ||||| || Sbjct 3172 GAAGTCCTCCCACACCTCCCAGCTGTCGACCATGCCGCGCATGAGCATCGACAGCGGGAA 3113 Query 9367 CACGGACGCGTTGTCGTCGATGAACGCGCACATCAGCAGGTTGGCGAAATCGAGTTCGCT 9426 || || || |||| |||||||| |||||||||||||||| |||| || ||||| Sbjct 3112 GACAGAGGCCGTGTCATCGATGAAGCCGCACATCAGCAGGTTCTCGAAGTCCGCATCGCT 3053 Query 9427 GTACTCCAGCCGCAACTGGTCGATGTCGAACAGGTTGCAGCCGCCGCGCAGCGCGTCCTC 9486 ||||||||||||||||||||||| |||||||||||||||||| ||| | ||||| || Sbjct 3052 GTACTCCAGCCGCAACTGGTCGAGGTCGAACAGGTTGCAGCCACCGGCGATGGCGTCTTC 2993 Query 9487 TACCGTCACGATCTGGCGCCACTGACCGTCAGCGCAGCGCATGCCGTTGCGCAGCGCGGT 9546 ||||| || ||||| |||||||||||| ||||| ||| ||||| ||| | Sbjct 2992 CACCGTGACAATCTGTTTCCACTGACCGTCCGCGCACCGCCGGCCGTCCTGCAAGTTCGC 2933 Query 9547 GTGGCTCACGTCGATCTTGACCTGTTTGTCCTTGGCCTTGCCGCGGTTGAACAGTGCGCC 9606 |||||| ||||| | || || | ||||| | ||||| |||||||| ||||| Sbjct 2932 GTGGCTGACGTCAACGCGGATGTGGTCTTCCTTCTTCCGCCCGCGATTGAACAGCGCGCC 2873 Query 9607 GGACCAGAACGGGTAGGCCTCATGCGACAAGCTGGACGGCGTGGAGAAGTACGTTTGCCG 9666 |||||||||||||| || || || | | ||| || ||||| ||||| || || ||||| Sbjct 2872 AGACCAGAACGGGTACGCTTCGTGGGCAAGGCTCGAAGGCGTCGAGAAATAAGTCTGCCG 2813 Query 9667 CCAGTGCTTGTGGATCGCCATGCCGGACGCGACCTTGCGCAGTTCCTGGAAGCGCGGCAC 9726 ||| | | |||||| ||||| ||||| || ||||||||||| || ||||||||| | | Sbjct 2812 CCACTTCGAGTGGATGGCCATCCCGGAGGCCACCTTGCGCAGCTCTTGGAAGCGCTGGAT 2753 Query 9727 CCAGAAGTACTCGTCGAAGTACAGGTTGCCGTGGTAGCTCTGCGCGGTGCGGGCGTTGGT 9786 ||||||||||||||| | || ||||||||||| ||||||||||||||||| ||||| || Sbjct 2752 CCAGAAGTACTCGTCCAGATAGAGGTTGCCGTGATAGCTCTGCGCGGTGCGTGCGTTTGT 2693 Query 9787 CCCGAGGAAGTACAGCGTCGCCCCGTTGGGCAACACCATCGGGTCGCCCTTCAGCTCGAC 9846 |||||||| ||||||||||| ||||| |||||||||||||| |||||||||||||| || Sbjct 2692 GCCGAGGAAATACAGCGTCGCGCCGTTCGGCAACACCATCGGCTCGCCCTTCAGCTCCAC 2633 Query 9847 GCCGGCTGCGTCCTTCGCGAATTGGATGATGTACTGCTTGAAGACGTGCGCCTGTGCCTT 9906 |||||| || ||||||||||| ||||||||||| |||||||| ||||| ||||| ||||| Sbjct 2632 GCCGGCAGCATCCTTCGCGAACTGGATGATGTATTGCTTGAAAACGTGGGCCTGCGCCTT 2573 Query 9907 GCTGGCCGATAGAAAAATCTGGTTGCGGCCAGTGGTCAGCGCGTCGATGAACGCCTCGCG 9966 ||||||||| | |||||||| ||||| || ||||||| ||| || ||||| ||||| || Sbjct 2572 GCTGGCCGACAAGAAAATCTGATTGCGCCCCGTGGTCAACGCATCAATGAAGGCCTCCCG 2513 Query 9967 TGCGAAGTACCACGTCGCGCCGATCTGCCGGCTCTTGAGCAGGTTGCGGATGCGCTCGAC 10026 |||||| |||||||| || |||||||| |||||||| || | |||||||| ||||| Sbjct 2512 TGCGAAATACCACGTGGCACCGATCTGGCGGCTCTTCAGAACATTGCGGATACGCTCTCT 2453 Query 10027 CTGCCCAGCCTCGTACCAGACGCGCTGGTAATCGAACATCGAGTCGCGGAAGGC 10080 | || || ||||||||| | |||||||| |||||||| || || | ||| || Sbjct 2452 GAGACCCGCTTCGTACCAGGCACGCTGGTAGTCGAACATTGAATCCCTGAACGC 2399 Score = 434 bits (480), Expect = 3e-117 Identities = 439/567 (77%), Gaps = 12/567 (2%) Strand=Plus/Minus Query 11409 AAGGCCCAGTTGGAGAAGACCGACGCCTACGCCGCCCGCCCGCCGGCCACGGGCGGCGCC 11468 |||| | || ||||||| ||||| | | | | | |||||||||||||||||| | Sbjct 560 AAGGGCGAGCTGGAGAACACCGAGACGTTCACGAAGAGACCGCCGGCCACGGGCGGCAGC 501 Query 11469 GGCGCACCC---ATCACGACCGATTGCTGACCCGGCCACCGGCCCGCAGCACACCAACCA 11525 |||| || |||| |||||| |||||| ||||| |||| | || | | |||| Sbjct 500 GGCGACGCCGCAATCAAGACCGACTGCTGAGCCGGCACCCGGACAGCGACTCCATAACC- 442 Query 11526 GACCACACACCGGAGTCAACACAATGCGCAACGAAACCCGCCGCCTCTTCACGGCTTACA 11585 || || |||||| |||| | ||||| ||||| |||||||| | | |||||| ||| Sbjct 441 ---CATAC-CCGGAGCCAACTCTATGCGTAACGATACCCGCCGGATGTACACGGCGTACG 386 Query 11586 AGGACGCAATCGCCAAGCTCAACGGCGTGGCTCGCGTTGATGAGAAGTTCAGCGTCGCGC 11645 | | || ||||||||| || |||||||| | |||||||| || |||||||| | Sbjct 385 AAGGCGAAATCGCCAAACTGAACGGCGTTGAACGCGTTGACCGCAAATTCAGCGTGCAAC 326 Query 11646 CGAGCGTCCAGCAGAAGCTGGAGACCAAGGTTCAGGAGTCGAGCGATTTCCTGACCCGCA 11705 |||||||||||||| |||||| || ||||| ||||| ||||| || || || || ||| Sbjct 325 CGAGCGTCCAGCAGCGGCTGGAAACGAAGGTGCAGGAATCGAGTGAATTTCT--CCAGCA 268 Query 11706 --TCAACTTCTATGGCGTGCCCGAACAGGAAGCCGAAAAGATCGGCCTGGGCGTGTCGGG 11763 ||||| | ||||||||| || ||||||| ||| ||||||||||| |||||||| || Sbjct 267 GATCAACGTTCATGGCGTGCTGGAGCAGGAAGGCGAGAAGATCGGCCTCGGCGTGTCCGG 208 Query 11764 CCCGGTGGCAAGCAACACCGACACCACCCAGCAGGACCGGCAGACCTCCGACATTGCCAC 11823 ||||||||| ||| ||||||||| || |||||||||||||| ||||||||| || Sbjct 207 CCCGGTGGCCGGCACCACCGACACGACGGTCAAGGACCGGCAGACCAGCGACATTGCGAC 148 Query 11824 GCTGGACGGCCGCCGCTACCGGTGCGAGCAGACCAACTCCGACACGCACATCACCTACCA 11883 |||||| || ||| ||||| ||||||||||||||||| ||||| |||||||||||||| Sbjct 147 GCTGGATGGTCGCAAGTACCGCTGCGAGCAGACCAACTCGGACACCCACATCACCTACCA 88 Query 11884 GAGGCTGGACGCCTGGGCCAAGTTCCCCGACTTCCAGACTCGGATCCGCGACGCCATCAT 11943 | | || ||||| ||||| |||||||||||||||||||| || || |||||||||||| | Sbjct 87 GCGCCTTGACGCGTGGGCGAAGTTCCCCGACTTCCAGACGCGCATTCGCGACGCCATCCT 28 Query 11944 CAAGCGCCAGGCGCTGGATCGCATCAT 11970 ||||||||||| ||||||||||| Sbjct 27 GCGCCGCCAGGCGCTCGATCGCATCAT 1 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 127880023902360