Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Solanum_20lycopersicum_20[refseq_20GCF_5F000188115.3_202014-10-16]
3,145 sequences; 823,786,402 total letters
Query= NC_025115.1
Length=40002
Score E
Sequences producing significant alignments: (Bits) Value
seq1141 749 0.0
>seq1141
Length=3271
Score = 749 bits (830), Expect = 0.0
Identities = 668/834 (80%), Gaps = 2/834 (0%)
Strand=Plus/Minus
Query 9248 TTGGGGTCGTAGCCGACCCACACCGGCCGGTTGCCGAACGGCCGCGGCG-CGAACGGCCG 9306
|| ||||||||||| ||||| ||| || || ||||| || || |||| | || ||| |
Sbjct 3231 TTCGGGTCGTAGCCCACCCATACCTCACGATTACCGAAAGGGCGGGGCGACCAATGGC-G 3173
Query 9307 GAAGTCCTCCCATACTTCCCAGGTGTCCACCATCCCGCGCATGAGCATCGAGAGCGGAAA 9366
|||||||||||| || |||||| |||| ||||| ||||||||||||||||| ||||| ||
Sbjct 3172 GAAGTCCTCCCACACCTCCCAGCTGTCGACCATGCCGCGCATGAGCATCGACAGCGGGAA 3113
Query 9367 CACGGACGCGTTGTCGTCGATGAACGCGCACATCAGCAGGTTGGCGAAATCGAGTTCGCT 9426
|| || || |||| |||||||| |||||||||||||||| |||| || |||||
Sbjct 3112 GACAGAGGCCGTGTCATCGATGAAGCCGCACATCAGCAGGTTCTCGAAGTCCGCATCGCT 3053
Query 9427 GTACTCCAGCCGCAACTGGTCGATGTCGAACAGGTTGCAGCCGCCGCGCAGCGCGTCCTC 9486
||||||||||||||||||||||| |||||||||||||||||| ||| | ||||| ||
Sbjct 3052 GTACTCCAGCCGCAACTGGTCGAGGTCGAACAGGTTGCAGCCACCGGCGATGGCGTCTTC 2993
Query 9487 TACCGTCACGATCTGGCGCCACTGACCGTCAGCGCAGCGCATGCCGTTGCGCAGCGCGGT 9546
||||| || ||||| |||||||||||| ||||| ||| ||||| ||| |
Sbjct 2992 CACCGTGACAATCTGTTTCCACTGACCGTCCGCGCACCGCCGGCCGTCCTGCAAGTTCGC 2933
Query 9547 GTGGCTCACGTCGATCTTGACCTGTTTGTCCTTGGCCTTGCCGCGGTTGAACAGTGCGCC 9606
|||||| ||||| | || || | ||||| | ||||| |||||||| |||||
Sbjct 2932 GTGGCTGACGTCAACGCGGATGTGGTCTTCCTTCTTCCGCCCGCGATTGAACAGCGCGCC 2873
Query 9607 GGACCAGAACGGGTAGGCCTCATGCGACAAGCTGGACGGCGTGGAGAAGTACGTTTGCCG 9666
|||||||||||||| || || || | | ||| || ||||| ||||| || || |||||
Sbjct 2872 AGACCAGAACGGGTACGCTTCGTGGGCAAGGCTCGAAGGCGTCGAGAAATAAGTCTGCCG 2813
Query 9667 CCAGTGCTTGTGGATCGCCATGCCGGACGCGACCTTGCGCAGTTCCTGGAAGCGCGGCAC 9726
||| | | |||||| ||||| ||||| || ||||||||||| || ||||||||| | |
Sbjct 2812 CCACTTCGAGTGGATGGCCATCCCGGAGGCCACCTTGCGCAGCTCTTGGAAGCGCTGGAT 2753
Query 9727 CCAGAAGTACTCGTCGAAGTACAGGTTGCCGTGGTAGCTCTGCGCGGTGCGGGCGTTGGT 9786
||||||||||||||| | || ||||||||||| ||||||||||||||||| ||||| ||
Sbjct 2752 CCAGAAGTACTCGTCCAGATAGAGGTTGCCGTGATAGCTCTGCGCGGTGCGTGCGTTTGT 2693
Query 9787 CCCGAGGAAGTACAGCGTCGCCCCGTTGGGCAACACCATCGGGTCGCCCTTCAGCTCGAC 9846
|||||||| ||||||||||| ||||| |||||||||||||| |||||||||||||| ||
Sbjct 2692 GCCGAGGAAATACAGCGTCGCGCCGTTCGGCAACACCATCGGCTCGCCCTTCAGCTCCAC 2633
Query 9847 GCCGGCTGCGTCCTTCGCGAATTGGATGATGTACTGCTTGAAGACGTGCGCCTGTGCCTT 9906
|||||| || ||||||||||| ||||||||||| |||||||| ||||| ||||| |||||
Sbjct 2632 GCCGGCAGCATCCTTCGCGAACTGGATGATGTATTGCTTGAAAACGTGGGCCTGCGCCTT 2573
Query 9907 GCTGGCCGATAGAAAAATCTGGTTGCGGCCAGTGGTCAGCGCGTCGATGAACGCCTCGCG 9966
||||||||| | |||||||| ||||| || ||||||| ||| || ||||| ||||| ||
Sbjct 2572 GCTGGCCGACAAGAAAATCTGATTGCGCCCCGTGGTCAACGCATCAATGAAGGCCTCCCG 2513
Query 9967 TGCGAAGTACCACGTCGCGCCGATCTGCCGGCTCTTGAGCAGGTTGCGGATGCGCTCGAC 10026
|||||| |||||||| || |||||||| |||||||| || | |||||||| |||||
Sbjct 2512 TGCGAAATACCACGTGGCACCGATCTGGCGGCTCTTCAGAACATTGCGGATACGCTCTCT 2453
Query 10027 CTGCCCAGCCTCGTACCAGACGCGCTGGTAATCGAACATCGAGTCGCGGAAGGC 10080
| || || ||||||||| | |||||||| |||||||| || || | ||| ||
Sbjct 2452 GAGACCCGCTTCGTACCAGGCACGCTGGTAGTCGAACATTGAATCCCTGAACGC 2399
Score = 434 bits (480), Expect = 3e-117
Identities = 439/567 (77%), Gaps = 12/567 (2%)
Strand=Plus/Minus
Query 11409 AAGGCCCAGTTGGAGAAGACCGACGCCTACGCCGCCCGCCCGCCGGCCACGGGCGGCGCC 11468
|||| | || ||||||| ||||| | | | | | |||||||||||||||||| |
Sbjct 560 AAGGGCGAGCTGGAGAACACCGAGACGTTCACGAAGAGACCGCCGGCCACGGGCGGCAGC 501
Query 11469 GGCGCACCC---ATCACGACCGATTGCTGACCCGGCCACCGGCCCGCAGCACACCAACCA 11525
|||| || |||| |||||| |||||| ||||| |||| | || | | ||||
Sbjct 500 GGCGACGCCGCAATCAAGACCGACTGCTGAGCCGGCACCCGGACAGCGACTCCATAACC- 442
Query 11526 GACCACACACCGGAGTCAACACAATGCGCAACGAAACCCGCCGCCTCTTCACGGCTTACA 11585
|| || |||||| |||| | ||||| ||||| |||||||| | | |||||| |||
Sbjct 441 ---CATAC-CCGGAGCCAACTCTATGCGTAACGATACCCGCCGGATGTACACGGCGTACG 386
Query 11586 AGGACGCAATCGCCAAGCTCAACGGCGTGGCTCGCGTTGATGAGAAGTTCAGCGTCGCGC 11645
| | || ||||||||| || |||||||| | |||||||| || |||||||| |
Sbjct 385 AAGGCGAAATCGCCAAACTGAACGGCGTTGAACGCGTTGACCGCAAATTCAGCGTGCAAC 326
Query 11646 CGAGCGTCCAGCAGAAGCTGGAGACCAAGGTTCAGGAGTCGAGCGATTTCCTGACCCGCA 11705
|||||||||||||| |||||| || ||||| ||||| ||||| || || || || |||
Sbjct 325 CGAGCGTCCAGCAGCGGCTGGAAACGAAGGTGCAGGAATCGAGTGAATTTCT--CCAGCA 268
Query 11706 --TCAACTTCTATGGCGTGCCCGAACAGGAAGCCGAAAAGATCGGCCTGGGCGTGTCGGG 11763
||||| | ||||||||| || ||||||| ||| ||||||||||| |||||||| ||
Sbjct 267 GATCAACGTTCATGGCGTGCTGGAGCAGGAAGGCGAGAAGATCGGCCTCGGCGTGTCCGG 208
Query 11764 CCCGGTGGCAAGCAACACCGACACCACCCAGCAGGACCGGCAGACCTCCGACATTGCCAC 11823
||||||||| ||| ||||||||| || |||||||||||||| ||||||||| ||
Sbjct 207 CCCGGTGGCCGGCACCACCGACACGACGGTCAAGGACCGGCAGACCAGCGACATTGCGAC 148
Query 11824 GCTGGACGGCCGCCGCTACCGGTGCGAGCAGACCAACTCCGACACGCACATCACCTACCA 11883
|||||| || ||| ||||| ||||||||||||||||| ||||| ||||||||||||||
Sbjct 147 GCTGGATGGTCGCAAGTACCGCTGCGAGCAGACCAACTCGGACACCCACATCACCTACCA 88
Query 11884 GAGGCTGGACGCCTGGGCCAAGTTCCCCGACTTCCAGACTCGGATCCGCGACGCCATCAT 11943
| | || ||||| ||||| |||||||||||||||||||| || || |||||||||||| |
Sbjct 87 GCGCCTTGACGCGTGGGCGAAGTTCCCCGACTTCCAGACGCGCATTCGCGACGCCATCCT 28
Query 11944 CAAGCGCCAGGCGCTGGATCGCATCAT 11970
||||||||||| |||||||||||
Sbjct 27 GCGCCGCCAGGCGCTCGATCGCATCAT 1
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 127880023902360
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |