Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Solanum_20lycopersicum_20[refseq_20GCF_5F000188115.3_202014-10-16]
3,145 sequences; 823,786,402 total letters
Query= NC_025960.1
Length=148981
Score E
Sequences producing significant alignments: (Bits) Value
seq1 89.7 5e-13
seq11 84.2 2e-11
>seq1
Length=98543444
Score = 89.7 bits (98), Expect = 5e-13
Identities = 136/191 (71%), Gaps = 2/191 (1%)
Strand=Plus/Minus
Query 131934 CTTTTTGAATGTTGTAGTC-GCTCATGGTACGCGAATCTTCGAGCTGTTTACCGGAATAG 131992
|||| ||||||||||| || ||| | ||||| |||||||||||| || |||| ||
Sbjct 87380390 CTTTCTGAATGTTGTAATCAGCT-AGAGTACGTCCATCTTCGAGCTGCTTTCCGGCGAAG 87380332
Query 131993 ATTAGACGCTGTTGATCTGGAGGTATGCCTTCTTTATCGGTAATTTTTTGTTTCAACTGT 132052
|| | ||||| || || || || || ||||| || || ||| || ||| | |
Sbjct 87380331 ATCAATCGCTGCTGGTCCGGTGGAATACCTTCCTTGTCTTGAATCTTAGCTTTGACATTG 87380272
Query 132053 TCCACAGTATCGGTCGGCTCCACTTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTTATG 132112
|| | ||| ||| ||| || ||||| | ||| | ||| || || || |||||||| | |
Sbjct 87380271 TCAATAGTGTCGCTCGATTCAACTTCAAGCGTGATCGTCTTCCCCGTAAGAGTTTTCACG 87380212
Query 132113 AAAATCTGCAT 132123
|| ||||||||
Sbjct 87380211 AAGATCTGCAT 87380201
>seq11
Length=56302525
Score = 84.2 bits (92), Expect = 2e-11
Identities = 150/219 (68%), Gaps = 0/219 (0%)
Strand=Plus/Minus
Query 131905 CAAGCGCAAAACCAAATGTATGTTTGACTCTTTTTGAATGTTGTAGTCGCTCATGGTACG 131964
||| ||||| |||| ||| | ||||||| || || ||||||||||| | || |
Sbjct 497691 CAAACGCAACACCAGATGGAGAGTTGACTCCTTCTGGATGTTGTAGTCTGCAAGAGTCCT 497632
Query 131965 CGAATCTTCGAGCTGTTTACCGGAATAGATTAGACGCTGTTGATCTGGAGGTATGCCTTC 132024
| ||| || || |||||||| | | |||| | ||||||||| ||||| || || || ||
Sbjct 497631 CCCATCCTCAAGTTGTTTACCAGCAAAGATCAAACGCTGTTGGTCTGGGGGAATACCCTC 497572
Query 132025 TTTATCGGTAATTTTTTGTTTCAACTGTTCCACAGTATCGGTCGGCTCCACTTCGACCGT 132084
|| || ||| ||| ||||| | || | ||||| | ||| || || | ||
Sbjct 497571 CTTGTCTTGAATCTTTGCTTTCACATTGTCAATGGTATCTGAACTCTCAACCTCCAATGT 497512
Query 132085 CAGCGTTTTACCAGTCAGAGTTTTTATGAAAATCTGCAT 132123
| || || ||||||| ||| || | || ||||||||
Sbjct 497511 GATTGTCTTCCCAGTCAAAGTCTTCACAAAGATCTGCAT 497473
Score = 84.2 bits (92), Expect = 2e-11
Identities = 135/194 (70%), Gaps = 0/194 (0%)
Strand=Plus/Minus
Query 131930 GACTCTTTTTGAATGTTGTAGTCGCTCATGGTACGCGAATCTTCGAGCTGTTTACCGGAA 131989
|||||||| || ||||| ||||| | ||| || ||| || ||||| ||||| | |
Sbjct 497894 GACTCTTTCTGGATGTTATAGTCTGCAAGGGTGCGGCCATCCTCAAGCTGCTTACCAGCA 497835
Query 131990 TAGATTAGACGCTGTTGATCTGGAGGTATGCCTTCTTTATCGGTAATTTTTTGTTTCAAC 132049
|||| || | |||||||||||| || || ||||| || || || ||| |||||
Sbjct 497834 AAGATGAGCCTCTGTTGATCTGGTGGGATCCCTTCCTTGTCCTGTATCTTTGCTTTCACA 497775
Query 132050 TGTTCCACAGTATCGGTCGGCTCCACTTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTT 132109
| || | |||||| | |||||| || | || | || || ||||| ||||| ||
Sbjct 497774 TTGTCAATAGTATCAGAGCTCTCCACCTCCAATGTGATTGTCTTCCCAGTAAGAGTCTTC 497715
Query 132110 ATGAAAATCTGCAT 132123
| || ||||||||
Sbjct 497714 ACAAAGATCTGCAT 497701
Score = 82.4 bits (90), Expect = 7e-11
Identities = 150/220 (68%), Gaps = 0/220 (0%)
Strand=Plus/Minus
Query 131905 CAAGCGCAAAACCAAATGTATGTTTGACTCTTTTTGAATGTTGTAGTCGCTCATGGTACG 131964
||| ||||| |||| ||| | ||||||| || || ||||||||||| | || |
Sbjct 497463 CAAACGCAACACCAGATGGAGAGTTGACTCCTTCTGGATGTTGTAGTCTGCAAGAGTCCT 497404
Query 131965 CGAATCTTCGAGCTGTTTACCGGAATAGATTAGACGCTGTTGATCTGGAGGTATGCCTTC 132024
| || || || |||||||| | | |||| | ||||||||| ||||| || || || ||
Sbjct 497403 CCCGTCCTCAAGTTGTTTACCAGCAAAGATCAAACGCTGTTGGTCTGGGGGAATACCCTC 497344
Query 132025 TTTATCGGTAATTTTTTGTTTCAACTGTTCCACAGTATCGGTCGGCTCCACTTCGACCGT 132084
|| || ||| ||| ||||| | || | ||||| | ||| || || | ||
Sbjct 497343 CTTGTCTTGAATCTTTGCTTTCACATTGTCAATGGTATCTGAACTCTCAACCTCCAATGT 497284
Query 132085 CAGCGTTTTACCAGTCAGAGTTTTTATGAAAATCTGCATG 132124
| || || ||||||| ||| || | ||||| ||||||
Sbjct 497283 AATTGTCTTCCCAGTCAAAGTCTTGACAAAAATTTGCATG 497244
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 476592463222200
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |