Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Solanum_20lycopersicum_20[refseq_20GCF_5F000188115.3_202014-10-16] 3,145 sequences; 823,786,402 total letters Query= NC_026440.1 Length=2243109 Score E Sequences producing significant alignments: (Bits) Value seq2 132 7e-25 >seq2 Length=55340444 Score = 132 bits (146), Expect = 7e-25 Identities = 350/525 (67%), Gaps = 16/525 (3%) Strand=Plus/Plus Query 1455753 TGTTCCCCATCCGCTACCAGCGGATATGGGAAATGTACCAAAAAGGCCGAGGCCTCCTTT 1455812 ||||||| || | || | | ||| ||||||||||| ||| || ||| ||| || || Sbjct 54781214 TGTTCCCAATTCAGTATCCACAGATTTGGGAAATGTA-CAAGAAAGCCATGGCATCTTTC 54781272 Query 1455813 TGGACCGCCGAGGAGGTCGACCTCGGCGCCGACACGGTCCACTGGGTGTCGCTGAGCGAC 1455872 ||||| || || || ||||| ||| | |||| || ||||||| || | | Sbjct 54781273 TGGACGGCAGAAGAAGTCGATCTCTCCACCGATACTCGTCACTGGGAAAACCTAACATCC 54781332 Query 1455873 GACGAGCGCCATTTCATCAAGCACGTCCTCGCCTTTTTTCGCCGCCAGCGATGGCATCGT 1455932 | || | |||||||||| || || || ||||||||| |||||| || |||||||| Sbjct 54781333 GGTGAAAGGCATTTCATCACTCATGTTCTTGCCTTTTTT-GCCGCCTCAGACGGCATCGT 54781391 Query 1455933 GGCCGAGAACCTGGCCGGCCGCTTTATGAAAGAGGTCCA-ATTGCCAGAGGCACGTTTGT 1455991 |||||||| || || | || |||||||| ||||| ||||| ||||| ||| | Sbjct 54781392 TTTAGAGAACCTCGCTGGAAGGTTCATGAAAGATGTCCAGGTTGCC-GAGGCTCGTGCTT 54781450 Query 1455992 TTTACGGGTTCCAGATCGCCATCGAAAACATCCACTCTGAAACCTACTCGCTCCTGATCG 1456051 | || |||||||| |||||||| || || ||||| || || | ||| | ||| | | Sbjct 54781451 TCTATGGGTTCCAAATCGCCATTGAGAATATCCATTCCGAGATGTACAGTTTGCTGTTGG 54781510 Query 1456052 ACACCTACGTCAAGGACCCGGTCGAGAAGGACCACCTCTTTCGCGCCATCGACACGGTGC 1456111 | | ||| ||||||| | | ||| ||| | | | || || || || || || | | Sbjct 54781511 AGTCGTACATCAAGGATTCTGACGAAAAGAGCAAATTGTTCCGTGCAATTGAGACAATCC 54781570 Query 1456112 CGTCGGTGAGGAAA--AAGGCCGACTGGGCGATGAAGTGGATCAACAAGGAGGGCCTCGA 1456169 | | ||| |||| ||||| | ||||| | |||||| || || ||| Sbjct 54781571 CTT--GTGTTGAAAAGAAGGCGAAATGGGCCCTTCGTTGGATC------GATGGGTCCGA 54781622 Query 1456170 CACTTT-GCCGAGCGGCTCGTCGGCTTTGC-CGCGTCGAGGGCATCTTTTTCTCGGGCAG 1456227 ||||| || ||||| | || | ||||| | || || || || || ||| || || Sbjct 54781623 AACTTTCGCGGAGCGTTTGGTGGCTTTTGCTTGTGTTGAAGGGATTTTCTTCAGCGGAAG 54781682 Query 1456228 TTTCTGCGCCATCTTTTGGCTCAAGAAGCGCGGCCTCATGCCCGG 1456272 ||||| | || |||||| | || || || || | ||||| || Sbjct 54781683 CTTCTGTTCGATATTTTGGTTGAAAAAACGGGGGTTAATGCCTGG 54781727 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 7177507858969490