Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Solanum_20lycopersicum_20[refseq_20GCF_5F000188115.3_202014-10-16]
3,145 sequences; 823,786,402 total letters
Query= NC_027213.1
Length=214699
Score E
Sequences producing significant alignments: (Bits) Value
seq4 125 1e-23
>seq4
Length=66470942
Score = 125 bits (138), Expect = 1e-23
Identities = 161/222 (73%), Gaps = 0/222 (0%)
Strand=Plus/Plus
Query 69751 CCTCCCTGATCTATGTATCTGGCAGTGTTATTATAGACTCTCAGCATCGGAATAATACCA 69810
||||| || || | |||| ||||||| |||| | || | |||||||||||||| |||
Sbjct 4387791 CCTCCTTGGTCAACATATCGAGCAGTGTCATTAAACACACGTAGCATCGGAATAATTCCA 4387850
Query 69811 TTAGATTTACCATTTGTTCCAGAAATATAACTTCCTCTTGCGCGAATATTACTAATAGAT 69870
|| ||| | |||||||||||| ||||||||| || | | |||||||| | ||||
Sbjct 4387851 TTTGATGTCCCATTTGTTCCACGAATATAACTCCCAGTGCCACGAATATTGTGCACAGAT 4387910
Query 69871 AGACCTATTCCTCCTGCCATTTTAGAGATTAGAGCACAACGTTTCAATGTGTCATATATA 69930
| || |||||||| || ||| || | |||||| || | |||||||||||
Sbjct 4387911 ACTCCAATTCCTCCAGCAGATTTGCTAATAACAGCACACTCCTTAAGAGTGTCATATATG 4387970
Query 69931 CCCTCTATGCTATCATCTATCATGTTAAGAAGAAAACAGCTA 69972
||||| || ||||||||| ||||| | || || ||||||
Sbjct 4387971 CCCTCAATACTATCATCTTTCATGCATATCAGGAAGCAGCTA 4388012
Score = 109 bits (120), Expect = 8e-19
Identities = 161/228 (71%), Gaps = 0/228 (0%)
Strand=Plus/Plus
Query 69990 AGTTCCCGCATTAAATAATGTAGGAGATGCGTGAGTGAACCATTTTTCAGAAAGCAGATT 70049
|||||| |||||||| | || ||||| || |||||||||||| | | ||| | || ||
Sbjct 4388111 AGTTCCAGCATTAAAAAGAGTTGGAGAAGCATGAGTGAACCATCTCTGAGACATCAAATG 4388170
Query 70050 GTATGTTTCAATAGCTGATTCTATATCCCACTGATGAATTCCTATCGCGACACGCATCAA 70109
|| || | || || ||||| ||||| || ||| ||||||| | ||| | |||||
Sbjct 4388171 ATAAGTCTTGATGGCAGATTCAATATCATTCTTATGTATTCCTACAGAGACTCTCATCAG 4388230
Query 70110 CATATGCTGAGGTCGTTCTACCGTTTTATTATTTATTTTCAACAGGTATGATTTTTCCAG 70169
||| || || || | |||||| ||| || || || || ||||| ||| |||||
Sbjct 4388231 CATGTGTTGTGGCCTTTCTACAACTTTCCCATCAATCTTTAAGAGGTAAGATCGCTCCAG 4388290
Query 70170 AGTTTTAAACCCAAAATAGTTGTATGAAAAGTCTCTTTCGTAAATAAT 70217
||||| || ||||| || | || ||||||||| || || || ||
Sbjct 4388291 GGTTTTGAAACCAAAGTAATCATAGTCAAAGTCTCTGTCATATATGAT 4388338
Score = 107 bits (118), Expect = 3e-18
Identities = 157/222 (71%), Gaps = 0/222 (0%)
Strand=Plus/Minus
Query 69751 CCTCCCTGATCTATGTATCTGGCAGTGTTATTATAGACTCTCAGCATCGGAATAATACCA 69810
|| || ||||| | ||||||||||| | |||| | || | |||||| |||| ||| |||
Sbjct 50409737 CCCCCTTGATCAACATATCTGGCAGTATCATTAAACACACGCAGCATAGGAACAATCCCA 50409678
Query 69811 TTAGATTTACCATTTGTTCCAGAAATATAACTTCCTCTTGCGCGAATATTACTAATAGAT 69870
|| ||| | || ||||||||| ||||||||| || | || || || || | ||||
Sbjct 50409677 TTTGATGTTCCGTTTGTTCCACGAATATAACTCCCAGTAGCACGTATGTTGTGCACAGAT 50409618
Query 69871 AGACCTATTCCTCCTGCCATTTTAGAGATTAGAGCACAACGTTTCAATGTGTCATATATA 69930
| || ||||| || || ||| || | |||||| | | || ||||||||
Sbjct 50409617 ACGCCAATTCCCCCAGCTGATTTGCTAATAACAGCACATTCCGTAAGAGTATCATATATG 50409558
Query 69931 CCCTCTATGCTATCATCTATCATGTTAAGAAGAAAACAGCTA 69972
||||| |||||||||||| ||||| | || || ||||||
Sbjct 50409557 CCCTCAATGCTATCATCTTTCATGCATATCAGGAAGCAGCTA 50409516
Score = 100 bits (110), Expect = 4e-16
Identities = 159/228 (70%), Gaps = 0/228 (0%)
Strand=Plus/Minus
Query 69990 AGTTCCCGCATTAAATAATGTAGGAGATGCGTGAGTGAACCATTTTTCAGAAAGCAGATT 70049
||| || |||||||||| ||| |||||||| ||||||||||| || ||| | || ||
Sbjct 50409318 AGTGCCAGCATTAAATAGTGTTGGAGATGCATGAGTGAACCAGCGTTGAGACATCAAATG 50409259
Query 70050 GTATGTTTCAATAGCTGATTCTATATCCCACTGATGAATTCCTATCGCGACACGCATCAA 70109
||||| | || | ||||| |||||| | || ||||| | | || | |||||
Sbjct 50409258 ATATGTCTTGATGACAGATTCAATATCCTCTTTGTGGATTCCAACAGATACTCTCATCAG 50409199
Query 70110 CATATGCTGAGGTCGTTCTACCGTTTTATTATTTATTTTCAACAGGTATGATTTTTCCAG 70169
|||||| || || | ||| || | || | || || || ||||| || |||| ||
Sbjct 50409198 CATATGTTGTGGCCTTTCCACAATCTTTCCCTGAATCTTTAAAAGGTAAGACCTTTCAAG 50409139
Query 70170 AGTTTTAAACCCAAAATAGTTGTATGAAAAGTCTCTTTCGTAAATAAT 70217
||||| || ||||| || | || ||||||||| ||||| || ||
Sbjct 50409138 GGTTTTGAAACCAAAGTAATCATAGTCAAAGTCTCTGTCGTATATGAT 50409091
Score = 98.7 bits (108), Expect = 1e-15
Identities = 129/174 (74%), Gaps = 6/174 (3%)
Strand=Plus/Minus
Query 69489 CTCTTTTTCATATTGTGTATATAGCCGTTCGAATTCATCTCCCCAAACATCATCCAATCC 69548
|||||||||||||| ||| || ||| || || || || ||||| ||| |||||||
Sbjct 50410249 CTCTTTTTCATATTTTGTGTACAGCTTCTCAAAATCTTCACCCCAGCAATCTGCCAATCC 50410190
Query 69549 AGGACATTCATTTGGACACATCAATGACCACACATCATCATCCTT--AACTCGTTTCATA 69606
|||| ||||||||||| | ||| ||||| | ||| | ||| |||| || ||||
Sbjct 50410189 AGGAGCCTCATTTGGACAAAACAAAGACCATATCCCAT--TGCTTTGGACTCTTTGCATA 50410132
Query 69607 AATAGATCGGGAATCCAAAGAGCTATA-AAGAGATCTCTGGTTCTATTTTCTTC 69659
|||||||| || | ||||||||| ||| || ||||||| | | ||| |||||
Sbjct 50410131 AATAGATCTGGCACCCAAAGAGC-ATAGAAAAGATCTCGTGCCCGATTCTCTTC 50410079
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 686881795897800
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |