Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Solanum_20lycopersicum_20[refseq_20GCF_5F000188115.3_202014-10-16] 3,145 sequences; 823,786,402 total letters Query= NC_027368.1 Length=33828 Score E Sequences producing significant alignments: (Bits) Value seq1141 86.0 1e-12 >seq1141 Length=3271 Score = 86.0 bits (94), Expect = 1e-12 Identities = 265/402 (66%), Gaps = 16/402 (4%) Strand=Plus/Minus Query 15238 CATCAACAAAGATGCACATAAACAAGTTGTTGAAATCGGTTTCGTTGTACTCTTCGCGCA 15297 |||| | ||| |||||| | || ||| | ||| || | ||| ||||||| |||| Sbjct 3098 CATCGATGAAGCCGCACATCAGCAGGTTCTCGAAGTCCGCATCGCTGTACTCCAGCCGCA 3039 Query 15298 GCTCGTCGATGTCGAACAGGTCACAGCCACCCTTGGCGGCATCTTCAATCGTGACCACAT 15357 || ||||| ||||||||||| |||||||| | ||| ||||| | |||||| | | Sbjct 3038 ACTGGTCGAGGTCGAACAGGTTGCAGCCACCGGCGATGGCGTCTTCCACCGTGACAATCT 2979 Query 15358 AACGCCACTGCTTATCCGGGCAAAGGCGACCGCCATCGCGCAGTTCAT----CAAACGTT 15413 |||||| |||| ||| | || ||| | | || ||||| | |||| Sbjct 2978 GTTTCCACTGACCGTCCGCGCACCGCCGGCCGTCCT-GCA-AGTTCGCGTGGCTGACGTC 2921 Query 15414 GGGAACTCG-ATGT--TCTTGCGTCGTTCGCT-GCCATCGCGCCATTTGTCCCCAGTCCA 15469 ||| || |||| |||| | || | ||| || || | | | |||| ||| Sbjct 2920 ---AACGCGGATGTGGTCTTCCTTCTTCCGCCCGCGATTGAACAGCGCG---CCAGACCA 2867 Query 15470 GAACGGGTAAGCGGGGTGCATTTTGGTTGAAGGGGTGGAAAAGTACGTCTTGCGCCACTT 15529 ||||||||| || ||| | | ||||| || || || || |||| |||||||| Sbjct 2866 GAACGGGTACGCTTCGTGGGCAAGGCTCGAAGGCGTCGAGAAATAAGTCTGCCGCCACTT 2807 Query 15530 CTTATGCGTGGCCATCGCTGAGGCGACTTTGTTCAGCTCGTCAAACTTGCCGATCCAGAA 15589 | || |||||||| | ||||| || ||| |||||| | || ||||||||| Sbjct 2806 CGAGTGGATGGCCATCCCGGAGGCCACCTTGCGCAGCTCTTGGAAGCGCTGGATCCAGAA 2747 Query 15590 ATACTCATCCACATACACATGGCCGTGGTAACTCTGCGCTGT 15631 ||||| |||| ||| | | |||||| || |||||||| || Sbjct 2746 GTACTCGTCCAGATAGAGGTTGCCGTGATAGCTCTGCGCGGT 2705 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 108123961757100