Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Solanum_20lycopersicum_20[refseq_20GCF_5F000188115.3_202014-10-16]
3,145 sequences; 823,786,402 total letters
Query= NC_027778.1
Length=124244
Score E
Sequences producing significant alignments: (Bits) Value
seq2 167 2e-36
>seq2
Length=55340444
Score = 167 bits (184), Expect = 2e-36
Identities = 387/580 (67%), Gaps = 4/580 (1%)
Strand=Plus/Plus
Query 43707 TGTTTCCAATTCAATATCATGACATATGGCAAATGTACAAAAAAGCACAGGCGTCATTTT 43766
|||| |||||||| |||| | || ||| |||||||||| ||||| ||| || || |
Sbjct 54781214 TGTTCCCAATTCAGTATCCACAGATTTGGGAAATGTACAAGAAAGCCATGGCATCTTTCT 54781273
Query 43767 GGACAGCAGAAGAAGTTGATTTGACTAAAGA--CTTAGCACATTGGATTGCATTAAAACC 43824
|||| ||||||||||| ||| | | | || || ||| | ||| | | | | ||
Sbjct 54781274 GGACGGCAGAAGAAGTCGATCTCTCCACCGATACTCGTCAC-TGGGAAAACCTAACATCC 54781332
Query 43825 ACAAGAAAAACATTTTATATCTTTGGTTTTGGCGTTTTTTGCTGCGAGCGACGGGATAGT 43884
|||| ||||| || || ||| | || |||||||| || ||||| || ||
Sbjct 54781333 GGT-GAAAGGCATTTCATCACTCATGTTCTTGCCTTTTTTGCCGCCTCAGACGGCATCGT 54781391
Query 43885 CAATGAAAATTTGGTTAGTCGGTTTGCGCAAGAAGTTCAATTACCAGAAGCACGATGTTT 43944
|| || | | | | |||| | |||| || || | | || || || |||
Sbjct 54781392 TTTAGAGAACCTCGCTGGAAGGTTCATGAAAGATGTCCAGGTTGCCGAGGCTCGTGCTTT 54781451
Query 43945 TTATGGGTTTCAAATTGCCATAGAAAATATTCATTCGGAAATGTACAGTCTTCTGATAGA 44004
|||||||| ||||| ||||| || ||||| ||||| || ||||||||| | ||| | ||
Sbjct 54781452 CTATGGGTTCCAAATCGCCATTGAGAATATCCATTCCGAGATGTACAGTTTGCTGTTGGA 54781511
Query 44005 TACGTACATCAAAGATGGGCACGAGAAGCATCGATTGTTTAATGCGATAGAAACAGTACC 44064
|||||||||| ||| |||| ||| |||||| ||| || || ||| | ||
Sbjct 54781512 GTCGTACATCAAGGATTCTGACGAAAAGAGCAAATTGTTCCGTGCAATTGAGACAATCCC 54781571
Query 44065 TGCGATTAAACATAAAGCAGACTGGGCCCTTAAATGGATAAATTCAAATGATTCTTTTGG 44124
| || || | || || | ||||||||| ||||| || || |||| |
Sbjct 54781572 TTGTGTTGAAAAGAAGGCGAAATGGGCCCTTCGTTGGATCGATGGGTCCGAAACTTTCGC 54781631
Query 44125 AGAACGACTTGTCGCGTTTGCAGTTGTGGAAGGCATTTTCTTTTCAGGATCGTTTGCGGC 44184
|| || | || || ||||| ||| ||||| |||||||| ||| || |
Sbjct 54781632 GGAGCGTTTGGTGGCTTTTGCTTGTGTTGAAGGGATTTTCTTCAGCGGAAGCTTCTGTTC 54781691
Query 44185 CATATTTTGGTTAAAGAAACGAGGTTTGATGCCTGGGTTGACGTTTTCAAATGAGTTAAT 44244
||||||||||| || ||||| || || |||||||| || || || ||||||||||||||
Sbjct 54781692 GATATTTTGGTTGAAAAAACGGGGGTTAATGCCTGGATTAACCTTCTCAAATGAGTTAAT 54781751
Query 44245 AAGTCGTGATGAAGGCTTACATTGCGATTTTGCTTGCTTG 44284
| || ||||| || || || |||||||| || |||
Sbjct 54781752 TTCAAGAGACGAAGGTTTGCACTGTGATTTTGCGTGTTTG 54781791
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 397440765635725
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |