Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Solanum_20lycopersicum_20[refseq_20GCF_5F000188115.3_202014-10-16] 3,145 sequences; 823,786,402 total letters Query= NC_027778.1 Length=124244 Score E Sequences producing significant alignments: (Bits) Value seq2 167 2e-36 >seq2 Length=55340444 Score = 167 bits (184), Expect = 2e-36 Identities = 387/580 (67%), Gaps = 4/580 (1%) Strand=Plus/Plus Query 43707 TGTTTCCAATTCAATATCATGACATATGGCAAATGTACAAAAAAGCACAGGCGTCATTTT 43766 |||| |||||||| |||| | || ||| |||||||||| ||||| ||| || || | Sbjct 54781214 TGTTCCCAATTCAGTATCCACAGATTTGGGAAATGTACAAGAAAGCCATGGCATCTTTCT 54781273 Query 43767 GGACAGCAGAAGAAGTTGATTTGACTAAAGA--CTTAGCACATTGGATTGCATTAAAACC 43824 |||| ||||||||||| ||| | | | || || ||| | ||| | | | | || Sbjct 54781274 GGACGGCAGAAGAAGTCGATCTCTCCACCGATACTCGTCAC-TGGGAAAACCTAACATCC 54781332 Query 43825 ACAAGAAAAACATTTTATATCTTTGGTTTTGGCGTTTTTTGCTGCGAGCGACGGGATAGT 43884 |||| ||||| || || ||| | || |||||||| || ||||| || || Sbjct 54781333 GGT-GAAAGGCATTTCATCACTCATGTTCTTGCCTTTTTTGCCGCCTCAGACGGCATCGT 54781391 Query 43885 CAATGAAAATTTGGTTAGTCGGTTTGCGCAAGAAGTTCAATTACCAGAAGCACGATGTTT 43944 || || | | | | |||| | |||| || || | | || || || ||| Sbjct 54781392 TTTAGAGAACCTCGCTGGAAGGTTCATGAAAGATGTCCAGGTTGCCGAGGCTCGTGCTTT 54781451 Query 43945 TTATGGGTTTCAAATTGCCATAGAAAATATTCATTCGGAAATGTACAGTCTTCTGATAGA 44004 |||||||| ||||| ||||| || ||||| ||||| || ||||||||| | ||| | || Sbjct 54781452 CTATGGGTTCCAAATCGCCATTGAGAATATCCATTCCGAGATGTACAGTTTGCTGTTGGA 54781511 Query 44005 TACGTACATCAAAGATGGGCACGAGAAGCATCGATTGTTTAATGCGATAGAAACAGTACC 44064 |||||||||| ||| |||| ||| |||||| ||| || || ||| | || Sbjct 54781512 GTCGTACATCAAGGATTCTGACGAAAAGAGCAAATTGTTCCGTGCAATTGAGACAATCCC 54781571 Query 44065 TGCGATTAAACATAAAGCAGACTGGGCCCTTAAATGGATAAATTCAAATGATTCTTTTGG 44124 | || || | || || | ||||||||| ||||| || || |||| | Sbjct 54781572 TTGTGTTGAAAAGAAGGCGAAATGGGCCCTTCGTTGGATCGATGGGTCCGAAACTTTCGC 54781631 Query 44125 AGAACGACTTGTCGCGTTTGCAGTTGTGGAAGGCATTTTCTTTTCAGGATCGTTTGCGGC 44184 || || | || || ||||| ||| ||||| |||||||| ||| || | Sbjct 54781632 GGAGCGTTTGGTGGCTTTTGCTTGTGTTGAAGGGATTTTCTTCAGCGGAAGCTTCTGTTC 54781691 Query 44185 CATATTTTGGTTAAAGAAACGAGGTTTGATGCCTGGGTTGACGTTTTCAAATGAGTTAAT 44244 ||||||||||| || ||||| || || |||||||| || || || |||||||||||||| Sbjct 54781692 GATATTTTGGTTGAAAAAACGGGGGTTAATGCCTGGATTAACCTTCTCAAATGAGTTAAT 54781751 Query 44245 AAGTCGTGATGAAGGCTTACATTGCGATTTTGCTTGCTTG 44284 | || ||||| || || || |||||||| || ||| Sbjct 54781752 TTCAAGAGACGAAGGTTTGCACTGTGATTTTGCGTGTTTG 54781791 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 397440765635725