Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Solanum_20lycopersicum_20[refseq_20GCF_5F000188115.3_202014-10-16] 3,145 sequences; 823,786,402 total letters Query= NC_028091.1 Length=196300 Score E Sequences producing significant alignments: (Bits) Value seq4 116 5e-21 seq7 104 3e-17 seq2 86.0 8e-12 >seq4 Length=66470942 Score = 116 bits (128), Expect = 5e-21 Identities = 193/276 (70%), Gaps = 2/276 (1%) Strand=Plus/Minus Query 11540 AAGCCATCCATCTCGGTGAGTAATTGATTAATTGTTTGTTCTCTCTCATCATTTGCTGGC 11599 || |||||||| || || | | |||||||| || || || |||||||||||| | Sbjct 65981982 AACCCATCCATTTCAGTCAAAAGCTGATTAATAGTCTGCTCCCTCTCATCATTTCCACCT 65981923 Query 11600 ATACCACCAGCACTGCGTTGCTTGCCCACCGCATCAATCTCATCAATGAAGACAATACAT 11659 | ||| |||| | |||| | ||||| ||||||||||||||||| || |||||||| Sbjct 65981922 CCAAGACCTGCACCTCTTTGCCTTCCCACAGCATCAATCTCATCAATAAACACAATACAA 65981863 Query 11660 GGTTGATTTTCGC-GGGCGATTTCAAAGAGATCGCGAACCCTTTTGGCACCCACACCAAC 11718 || || ||| | || | ||||| | ||| | ||| || || |||||||| || Sbjct 65981862 GG-TGCTTTAGACTTCGCCTTCTCAAACAAATCCCTAACTCTAGAAGCTCCCACACCCAC 65981804 Query 11719 AAACATCTCCACAAAGTTTGCGGCAGAGCACTGGATGAATGGGACATTTGATTCACCCGC 11778 ||||| ||| ||||| | || || | || || ||||| ||| | ||||| || Sbjct 65981803 AAACAACTCAACAAACTCTGACGCTGCACAAGAGAAAAATGGCACACCAGCCTCACCAGC 65981744 Query 11779 GATGGCTCGGGCGAGGAGGGTCTTTCCCGTACCTGG 11814 | |||| || | ||||||||||| |||||||| Sbjct 65981743 TACTGCTCTAGCTAAAAGGGTCTTTCCAGTACCTGG 65981708 Score = 89.7 bits (98), Expect = 6e-13 Identities = 154/224 (69%), Gaps = 0/224 (0%) Strand=Plus/Minus Query 111941 TGCGGTCTTGGTGTACCAGCATTGAAGAGGGTTGGTGTTGCGTGAATGAACATACCTTGG 112000 || || ||||| || |||||||| || || ||||| | ||| ||| ||||| | ||| Sbjct 50409329 TGAGGCCTTGGAGTGCCAGCATTAAATAGTGTTGGAGATGCATGAGTGAACCAGCGTTGA 50409270 Query 112001 GACATCTTGTCGTATGTCTCCAAGACAGAATCAATGTCTTCCCCGTGGATGCCGATTGCG 112060 |||||| | ||||||| | |||||| ||||| || || |||||| || | | Sbjct 50409269 GACATCAAATGATATGTCTTGATGACAGATTCAATATCCTCTTTGTGGATTCCAACAGAT 50409210 Query 112061 ACCCGCATGAACATGTACTGTGGGGTTTCCATGAGGATGCCATCGAGCCGTTGAAGATAG 112120 || | ||| | ||| | ||||| |||||| | | || | | | | ||| || Sbjct 50409209 ACTCTCATCAGCATATGTTGTGGCCTTTCCACAATCTTTCCCTGAATCTTTAAAAGGTAA 50409150 Query 112121 CTCTTCTCAAGGGTTTTGAGACCAAAGTAACCAAAATCATAGTC 112164 | | ||||||||||||| |||||||||| || | ||| |||| Sbjct 50409149 GACCTTTCAAGGGTTTTGAAACCAAAGTAATCATAGTCAAAGTC 50409106 >seq7 Length=68045021 Score = 104 bits (114), Expect = 3e-17 Identities = 277/419 (66%), Gaps = 6/419 (1%) Strand=Plus/Plus Query 11483 TCAAGGATATCCACGCGATTAGTGGCCGCAATAACCACAATGCCAGTCTCATTGTCAAAG 11542 ||||| ||||| | ||||| || ||||||| ||| | || ||||| | || || Sbjct 63395503 TCAAGAATATCTGCACGATTGGTTGCCGCAACAACTATTATACCAGTATTTCCTTCGAAA 63395562 Query 11543 CCATCCATCTCGGTGAGTAATTGATTAATTGTTTGTTCTCTCTCATCATTTGCTGGCATA 11602 |||||||| || || | || ||| || | || ||||| || ||||||||| || | | Sbjct 63395563 CCATCCATTTCAGTCAATAGTTGGTTCAGGGTCTGTTCCCTTTCATCATTTCCT--CCTC 63395620 Query 11603 CCA--CCAGCACTGCGTTGCTTGCCCACCGCATCAATCTCATCAATGAAGACAATACATG 11660 | | |||| | | |||| || || |||||||| ||||||| || ||||| || | Sbjct 63395621 CAATTCCAGTCCCTCTTTGCCGCCCAACAGCATCAATTTCATCAACAAATACAATGCAAG 63395680 Query 11661 GTTGATTTTCGCGGGCGATTTCAAAGAGATCGCGAACCCTTTTGGCACCCACACCAACAA 11720 | |||||| ||| | | || ||||| || || | ||| || |||||||||| Sbjct 63395681 GAGCATTTTCCTTGGCCTTCTTGAAAAGATCACGGACTCGAGAGGCTCCAACACCAACAA 63395740 Query 11721 ACATCTCCACAAAGTTTGCGGCAGAGCACTG-GATGAATGGGACATTTGATTCACCCGCG 11779 ||||||| || || | || | || | || || ||||| ||| | |||||| || Sbjct 63395741 ACATCTCAACGAATTCTGAACCTGA-AATTGAGAAAAATGGAACACCCGCTTCACCAGCA 63395799 Query 11780 ATGGCTCGGGCGAGGAGGGTCTTTCCCGTACCTGGCTTACCCGCGAGAAGGGCGCCTCGG 11839 || || || || | ||| || || ||||| || ||| | ||||| | ||| Sbjct 63395800 ATTGCCTTTGCTAGCAAGGTTTTCCCAGTACCAGGAGGACCAACAAGAAGAACACCTTTT 63395859 Query 11840 GGGATCTTGGCACCACTTCCAAAATATCTCTCGGGTTGCTTGAGAAAATCCACAATCTC 11898 || || || || | || | ||||||| |||| ||| | ||| || || | ||| Sbjct 63395860 GGAATACGAGCCCCTACTGCAGTAAATCTCTCAGGTTTCTTCAAAAATTCTACGACCTC 63395918 >seq2 Length=55340444 Score = 86.0 bits (94), Expect = 8e-12 Identities = 150/218 (69%), Gaps = 3/218 (1%) Strand=Plus/Minus Query 122659 GCAAACTCCTGGTGGAGACCCTCATCTCGGGAAATAAGTTCATTTGAGAAGCATAGACCT 122718 ||||| || ||| | ||| || |||| ||||| | |||||||||||| || || Sbjct 54781784 GCAAAATCACAGTGCAAACCTTCGTCTCTTGAAATTAACTCATTTGAGAAGGTTAATCCA 54781725 Query 122719 GGCATGAGACCCCGCTTCTTCAACCAATAAATAGCGCAGAATGACCCGGAGAAGAAGATA 122778 ||||| | ||||| || ||||||||| | || | ||||| ||| |||||| || Sbjct 54781724 GGCATTAACCCCCGTTTTTTCAACCAAAATATCGAACAGAAGCTTCCGCTGAAGAAAATC 54781665 Query 122779 CCCTCCACACACGCAAACGCAAAAAGGCGTTCGGCGAAGGAGCGAGACTTTGCATCAAAC 122838 || || ||||| ||||| || | | || || ||||| | ||| |||| | | Sbjct 54781664 CCTTCAACACAAGCAAAAGCCACCAAACGCTCCGCGAAAGTTTCGGAC---CCATCGATC 54781608 Query 122839 CATTTCATTGCCCATTTCGCCTTCTTCTCAATACATGG 122876 || | ||||||||||||||||| |||| ||| || Sbjct 54781607 CAACGAAGGGCCCATTTCGCCTTCTTTTCAACACAAGG 54781570 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 628007310492000