Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Solanum_20lycopersicum_20[refseq_20GCF_5F000188115.3_202014-10-16] 3,145 sequences; 823,786,402 total letters Query= NC_028092.1 Length=193301 Score E Sequences producing significant alignments: (Bits) Value seq2 95.1 1e-14 seq4 87.8 2e-12 >seq2 Length=55340444 Score = 95.1 bits (104), Expect = 1e-14 Identities = 196/289 (68%), Gaps = 12/289 (4%) Strand=Plus/Plus Query 11905 CGGCACATTGGCTCGTGAAGAATTACCGAGAATCCTATGGTCTCTTTGCGTGCTCTGGTA 11964 |||| |||||| | | ||||||||| ||| | || || | || |||||| ||| | Sbjct 47380516 CGGCGCATTGGTACACGGTGAATTACCGGGAAGCGTACGGGATATTCGCGTGCAATGGGA 47380575 Query 11965 TTCTCTTCAACCACGAGTCACCCCGTCGTGGCCCGGATTTCGTGACAAAGAAGATCACC- 12023 ||||||||||||||||||| || ||||| || | |||||||||| | |||||| ||| Sbjct 47380576 TTCTCTTCAACCACGAGTCTCCACGTCGGGGTGAGAATTTCGTGACGAGGAAGATTACCC 47380635 Query 12024 -----GATGGTATCAAACAAATCGTGGCGGGTGAGAGGGAGTTCATTGAATTGGGGAACC 12078 | || | | | |||||| ||| |||| || | || ||||| || Sbjct 47380636 GGGCTGTAGGGAGGATAAAAATCG-GGC--TACAGAGCAAGGTTTTT---TTGGGTAATT 47380689 Query 12079 TCAACGCCGAGAGGGACTGGGGACATGCCAAGGACTATGTTGAAGCCATGTGGCTCGTAC 12138 | | || ||||||||||| ||| |||||||| ||||| |||||| | | | Sbjct 47380690 TACAGGCGTCAAGGGACTGGGGCTTTGCTGGAGACTATGTAGAAGCAATGTGGATGATGC 47380749 Query 12139 TTCAACAAGAAGAGGCGGACGAATATGTCGTCGCGACGGGGGAGACACA 12187 | || ||||| | | ||||| || || || || |||| ||| |||| Sbjct 47380750 TGCAGCAAGAGAAACCAGACGACTACGTTGTGGCAACGGAGGATTCACA 47380798 >seq4 Length=66470942 Score = 87.8 bits (96), Expect = 2e-12 Identities = 187/277 (68%), Gaps = 2/277 (1%) Strand=Plus/Minus Query 14153 AAGCCATCCATCTCAGTCAAGAGTTGATTGATGGTTTGTTCGCGTTCATCATTCGCAGGC 14212 || |||||||| |||||||| || ||||| || || || || | |||||||| || Sbjct 65981982 AACCCATCCATTTCAGTCAAAAGCTGATTAATAGTCTGCTCCCTCTCATCATTTCCACCT 65981923 Query 14213 ATACCACCCGCACTGCGTTGCTTACCGACGGCGTCAATTTCATCGATGAAAACGATACAT 14272 | ||| |||| | |||| | || || || ||||| ||||| || || || ||||| Sbjct 65981922 CCAAGACCTGCACCTCTTTGCCTTCCCACAGCATCAATCTCATCAATAAACACAATACAA 65981863 Query 14273 GGTTGATTTTCACGG-GCAACTTCAAAGATATCTCGCACTCTCTTGGCACCGACACCCAC 14331 ||| | ||| || || ||||| | ||| | ||||| || || |||||||| Sbjct 65981862 GGT-GCTTTAGACTTCGCCTTCTCAAACAAATCCCTAACTCTAGAAGCTCCCACACCCAC 65981804 Query 14332 AAACATCTCCACAAAATTGGCGGCGGAACATTGGATGAAGGGGACGTTAGATTCACCCGC 14391 ||||| ||| ||||| | | || | ||| || || || || || ||||| || Sbjct 65981803 AAACAACTCAACAAACTCTGACGCTGCACAAGAGAAAAATGGCACACCAGCCTCACCAGC 65981744 Query 14392 GATGGCTCGGGCGAGGAGGGTCTTCCCCGTCCCTGGT 14428 | |||| || | |||||||| || || |||||| Sbjct 65981743 TACTGCTCTAGCTAAAAGGGTCTTTCCAGTACCTGGT 65981707 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 618410887766200