Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Solanum_20lycopersicum_20[refseq_20GCF_5F000188115.3_202014-10-16] 3,145 sequences; 823,786,402 total letters Query= NC_028108.1 Length=171454 Score E Sequences producing significant alignments: (Bits) Value seq1166 125 8e-24 >seq1166 Length=3240 Score = 125 bits (138), Expect = 8e-24 Identities = 281/419 (67%), Gaps = 10/419 (2%) Strand=Plus/Plus Query 79380 CTCCATGAAGAGGTCCGGGATCCACAGGGCCGTGAAGAGGTCGCGGCAACGCATCTCCTC 79439 || |||||| |||||||| ||||| ||||||| | |||| | || || Sbjct 2481 CTTCATGAACAGGTCCGGAATCCAGTTGGCCGTGTTCATGTCGTGCGTGCGGCGGCGGTC 2540 Query 79440 GTCGCCCTGGTTCAGACGCAGCTCGAGAAAGTCCATGATGTCGGCGTGCCACGGCTCCAG 79499 ||||||| |||| ||||| || || || || ||| || |||||||| ||||| Sbjct 2541 GTCGCCCGTGTTCTTGCGCAGTTCCAGGAATTCTTCGATATCCAGGTGCCACGTTTCCAG 2600 Query 79500 ATAGATGGCGAACGAACCCTTGCGCTTGCCGCCGCCCTGGTTGACGTACCGGGCCGTGTT 79559 ||| | || | ||||||||||| |||| ||||||| ||| | |||||||| Sbjct 2601 GTAGGCGCAGACGGCGCCCTTGCGCTTTCCGC---CCTGGTTCACGGCCACGGCCGTGTC 2657 Query 79560 GTTGAAAACTCGGAGCATGGGCACGATGCCGTCGGCGAC--GCCGTTCGTCCCGTTGATT 79617 ||||| || || | ||||| | ||| | ||||| ||| || || || ||||| Sbjct 2658 GTTGACCACCTTCAGGAACGGCACCACGCCTT--GCGACTTGCCATTGGTGCCCTTGATG 2715 Query 79618 CGTGTACCGCTCGCCCGAATGTTCGAGCAGTGGATTCCGATGCCCCCGGACCACTTGGAG 79677 | | |||| ||| || | ||| | |||| | | || | ||| |||| ||||||| Sbjct 2716 TGCGAACCGAGCGCGCGCACGTTGGTCCAGTCGTTGCCCAGGCCGCCGGCGAACTTGGAC 2775 Query 79678 ATGTGCGCGCACTCCTTGAGCGTCTCGTAGATGCCCTCGATCGAGTCGTCCTTCATAGCG 79737 | ||||| |||||||||| |||||||||||| |||| ||||||| || | | Sbjct 2776 AGCAGCGCGTTTTCCTTGAGCGCCTCGTAGATGCCTTCGA---GGTCGTCCGACACGGTG 2832 Query 79738 ACCAGGAAGCAGCTCGACATCTGTGGGTTGTTCGTACCGGCGTTGAAGAGGGTCGGCGT 79796 |||| |||| ||||| || | | ||| || | |||||| || |||||||| Sbjct 2833 GTCAGGTAGCACGACGACAGTTGCGATCGGCGCGTGCCCGAGTTGAACAGCGTCGGCGT 2891 Score = 93.3 bits (102), Expect = 5e-14 Identities = 225/338 (67%), Gaps = 7/338 (2%) Strand=Plus/Minus Query 19289 GAGGGCATCTACGAGACGCTCAAGGAGTGCGCGCACATCTCCAAGTGGTCCGGGGGTATC 19348 || |||||||||||| |||||||||| ||||| | ||||||| |||| || | Sbjct 2813 GAAGGCATCTACGAGGCGCTCAAGGAAAACGCGCTGCTGTCCAAGTTCGCCGGCGGCCTG 2754 Query 19349 GGGATCCACTGCTCGAATATCCGGTCGAGTGGTACACGAATCAATGGGACGAACGG--AG 19406 || | | |||| | || | || || ||| | | ||||| || || || || || Sbjct 2753 GGCAACGACTGGACCAACGTGCGCGCGCTCGGTTCGCACATCAAGGGCACCAATGGCAAG 2694 Query 19407 TAGCCGACGGTATCGTCCCAATGCTCCGCGTCTTCAACAACACGGCCAGGTACGTCAACC 19466 | || | || | || || | || || ||||| |||||||| | ||| |||| Sbjct 2693 TCGC--AAGGCGTGGTGCCGTTCCTGAAGGTGGTCAACGACACGGCCGTGGCCGTGAACC 2636 Query 19467 AGGGGGGCGGCAAACGCAAGGGCTCGTTCGCCATCTACCTCGAGCCATGGCACGCGGACG 19526 | |||||| || ||||||||| | || | |||||| || | |||||| ||| Sbjct 2635 A---GGGCGGAAAGCGCAAGGGCGCCGTCTGCGCCTACCTGGAAACGTGGCACCTGGATA 2579 Query 19527 TCATGGATTTCCTCGAACTGCGCCTGAACCAGGGTGACGAGGAGATGCGCTGTCGCGACC 19586 || || ||||| ||||||||| |||| ||| ||||| ||| | |||| Sbjct 2578 TCGAAGAATTCCTGGAACTGCGCAAGAACACGGGCGACGACCGCCGCCGCACGCACGACA 2519 Query 19587 TCTTCACGGCCTTGTGGATTCCGGACCTATTCATGGAG 19624 | ||||||| |||||||||||||| |||||| || Sbjct 2518 TGAACACGGCCAACTGGATTCCGGACCTGTTCATGAAG 2481 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 548503236118800