Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Solanum_20lycopersicum_20[refseq_20GCF_5F000188115.3_202014-10-16]
3,145 sequences; 823,786,402 total letters
Query= NC_028108.1
Length=171454
Score E
Sequences producing significant alignments: (Bits) Value
seq1166 125 8e-24
>seq1166
Length=3240
Score = 125 bits (138), Expect = 8e-24
Identities = 281/419 (67%), Gaps = 10/419 (2%)
Strand=Plus/Plus
Query 79380 CTCCATGAAGAGGTCCGGGATCCACAGGGCCGTGAAGAGGTCGCGGCAACGCATCTCCTC 79439
|| |||||| |||||||| ||||| ||||||| | |||| | || ||
Sbjct 2481 CTTCATGAACAGGTCCGGAATCCAGTTGGCCGTGTTCATGTCGTGCGTGCGGCGGCGGTC 2540
Query 79440 GTCGCCCTGGTTCAGACGCAGCTCGAGAAAGTCCATGATGTCGGCGTGCCACGGCTCCAG 79499
||||||| |||| ||||| || || || || ||| || |||||||| |||||
Sbjct 2541 GTCGCCCGTGTTCTTGCGCAGTTCCAGGAATTCTTCGATATCCAGGTGCCACGTTTCCAG 2600
Query 79500 ATAGATGGCGAACGAACCCTTGCGCTTGCCGCCGCCCTGGTTGACGTACCGGGCCGTGTT 79559
||| | || | ||||||||||| |||| ||||||| ||| | ||||||||
Sbjct 2601 GTAGGCGCAGACGGCGCCCTTGCGCTTTCCGC---CCTGGTTCACGGCCACGGCCGTGTC 2657
Query 79560 GTTGAAAACTCGGAGCATGGGCACGATGCCGTCGGCGAC--GCCGTTCGTCCCGTTGATT 79617
||||| || || | ||||| | ||| | ||||| ||| || || || |||||
Sbjct 2658 GTTGACCACCTTCAGGAACGGCACCACGCCTT--GCGACTTGCCATTGGTGCCCTTGATG 2715
Query 79618 CGTGTACCGCTCGCCCGAATGTTCGAGCAGTGGATTCCGATGCCCCCGGACCACTTGGAG 79677
| | |||| ||| || | ||| | |||| | | || | ||| |||| |||||||
Sbjct 2716 TGCGAACCGAGCGCGCGCACGTTGGTCCAGTCGTTGCCCAGGCCGCCGGCGAACTTGGAC 2775
Query 79678 ATGTGCGCGCACTCCTTGAGCGTCTCGTAGATGCCCTCGATCGAGTCGTCCTTCATAGCG 79737
| ||||| |||||||||| |||||||||||| |||| ||||||| || | |
Sbjct 2776 AGCAGCGCGTTTTCCTTGAGCGCCTCGTAGATGCCTTCGA---GGTCGTCCGACACGGTG 2832
Query 79738 ACCAGGAAGCAGCTCGACATCTGTGGGTTGTTCGTACCGGCGTTGAAGAGGGTCGGCGT 79796
|||| |||| ||||| || | | ||| || | |||||| || ||||||||
Sbjct 2833 GTCAGGTAGCACGACGACAGTTGCGATCGGCGCGTGCCCGAGTTGAACAGCGTCGGCGT 2891
Score = 93.3 bits (102), Expect = 5e-14
Identities = 225/338 (67%), Gaps = 7/338 (2%)
Strand=Plus/Minus
Query 19289 GAGGGCATCTACGAGACGCTCAAGGAGTGCGCGCACATCTCCAAGTGGTCCGGGGGTATC 19348
|| |||||||||||| |||||||||| ||||| | ||||||| |||| || |
Sbjct 2813 GAAGGCATCTACGAGGCGCTCAAGGAAAACGCGCTGCTGTCCAAGTTCGCCGGCGGCCTG 2754
Query 19349 GGGATCCACTGCTCGAATATCCGGTCGAGTGGTACACGAATCAATGGGACGAACGG--AG 19406
|| | | |||| | || | || || ||| | | ||||| || || || || ||
Sbjct 2753 GGCAACGACTGGACCAACGTGCGCGCGCTCGGTTCGCACATCAAGGGCACCAATGGCAAG 2694
Query 19407 TAGCCGACGGTATCGTCCCAATGCTCCGCGTCTTCAACAACACGGCCAGGTACGTCAACC 19466
| || | || | || || | || || ||||| |||||||| | ||| ||||
Sbjct 2693 TCGC--AAGGCGTGGTGCCGTTCCTGAAGGTGGTCAACGACACGGCCGTGGCCGTGAACC 2636
Query 19467 AGGGGGGCGGCAAACGCAAGGGCTCGTTCGCCATCTACCTCGAGCCATGGCACGCGGACG 19526
| |||||| || ||||||||| | || | |||||| || | |||||| |||
Sbjct 2635 A---GGGCGGAAAGCGCAAGGGCGCCGTCTGCGCCTACCTGGAAACGTGGCACCTGGATA 2579
Query 19527 TCATGGATTTCCTCGAACTGCGCCTGAACCAGGGTGACGAGGAGATGCGCTGTCGCGACC 19586
|| || ||||| ||||||||| |||| ||| ||||| ||| | ||||
Sbjct 2578 TCGAAGAATTCCTGGAACTGCGCAAGAACACGGGCGACGACCGCCGCCGCACGCACGACA 2519
Query 19587 TCTTCACGGCCTTGTGGATTCCGGACCTATTCATGGAG 19624
| ||||||| |||||||||||||| |||||| ||
Sbjct 2518 TGAACACGGCCAACTGGATTCCGGACCTGTTCATGAAG 2481
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 548503236118800
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |