Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Solanum_20lycopersicum_20[refseq_20GCF_5F000188115.3_202014-10-16] 3,145 sequences; 823,786,402 total letters Query= NC_028110.1 Length=171045 Score E Sequences producing significant alignments: (Bits) Value seq2 122 1e-22 seq12 86.0 7e-12 seq8 82.4 8e-11 >seq2 Length=55340444 Score = 122 bits (134), Expect = 1e-22 Identities = 288/424 (68%), Gaps = 16/424 (4%) Strand=Plus/Minus Query 74763 TGCGAGCCTTCATCTCTGCTTATCAATTCATTCGAAAACGAAAGGCCAGGCATAAGTCCA 74822 ||| | ||||| ||||| || || ||||| || || | | |||||||| | || Sbjct 54781772 TGCAAACCTTCGTCTCTTGAAATTAACTCATTTGAGAAGGTTAATCCAGGCATTAACCCC 54781713 Query 74823 CGCTTCTTCAACCAAAAGATGGCACAGAAGGAACCACTGAAGAAGATGCCTTCGACACAC 74882 || || ||||||||||| || | ||||||| || |||||||| || ||||| ||||| Sbjct 54781712 CGTTTTTTCAACCAAAATATCGAACAGAAGCTTCCGCTGAAGAAAATCCCTTCAACACAA 54781653 Query 74883 GCAAAGGCGACAAGGCGTTGCGCGAACGGTGCATCGGA---AGTCATCCAAGTCTGAGCC 74939 ||||| || || | || | |||||| | | ||||| | |||||| | ||| Sbjct 54781652 GCAAAAGCCACCAAACGCTCCGCGAAAGTT---TCGGACCCATCGATCCAACGAAGGGCC 54781596 Query 74940 CATTCAGCTTTTCGTTTGACCGC-AGGGACAGTATCGATCGCTTGGAAGAGGCTTGC-CT 74997 |||| || ||| ||| | | | ||||| || || || || |||| | |||| || Sbjct 54781595 CATTTCGC-CTTCTTTTCAACACAAGGGATTGTCTCAATTGCACGGAACA-ATTTGCTCT 54781538 Query 74998 TCTCTTCGGGATCCTTGACGAGCTTGTCAATCATAAGTGAGTACGTCTCCGAATGAATCG 75057 | || || | |||||||| | | || | || | |||| |||| ||||| || Sbjct 54781537 TTTCGTCAGAATCCTTGATGTACGACTCCAACAGCAAACTGTACATCTCGGAATGGATAT 54781478 Query 75058 ACTCGTTGAACGA-CTGGTACGCGTAGAAAGACCGCGCCTCTGCAATCTGTACATCCTT- 75115 ||| || ||| ||| || | ||||||| || ||||| |||| ||| ||||| || Sbjct 54781477 TCTCAATG-GCGATTTGGAACCCATAGAAAGCACGAGCCTCGGCAACCTGGACATCTTTC 54781419 Query 75116 -TGAAAAATTCATGTCGATATTCTCCATGACGATGCCGTCCGAGGCGGCGAAAAAAGCCA 75174 |||| | || ||| ||||| | ||||||||||| |||||||| ||||| || | Sbjct 54781418 ATGAACCTTCCA--GCGAGGTTCTCTAAAACGATGCCGTCTGAGGCGGCAAAAAAGGCAA 54781361 Query 75175 GTAC 75178 | || Sbjct 54781360 GAAC 54781357 >seq12 Length=67145203 Score = 86.0 bits (94), Expect = 7e-12 Identities = 64/74 (86%), Gaps = 1/74 (1%) Strand=Plus/Plus Query 79625 TGCTTTCGATGAGCTTTGATCTCATTACCTCCCGCTTACTAAACGGGTGCTCT-ACCAAT 79683 |||| ||| |||| |||| |||| ||||||||||||||||||||||||||| ||||| Sbjct 66554047 TGCTCTCGTTGAGAGTTGAACTCAAGACCTCCCGCTTACTAAACGGGTGCTCTAACCAAC 66554106 Query 79684 TGAGCTACGAAAGC 79697 |||||||||| ||| Sbjct 66554107 TGAGCTACGAGAGC 66554120 Score = 82.4 bits (90), Expect = 8e-11 Identities = 65/77 (84%), Gaps = 1/77 (1%) Strand=Plus/Plus Query 79622 GACTGCTTTCGATGAGCTTTGATCTCATTACCTCCCGCTTACTAAACGGGTGCTCT-ACC 79680 || |||| ||| |||| | || |||| ||||||||||||||||||||||||||| ||| Sbjct 3693904 GATTGCTCTCGTTGAGAGTCGAACTCAAGACCTCCCGCTTACTAAACGGGTGCTCTAACC 3693963 Query 79681 AATTGAGCTACGAAAGC 79697 || |||||||||| ||| Sbjct 3693964 AACTGAGCTACGAGAGC 3693980 >seq8 Length=65866657 Score = 82.4 bits (90), Expect = 8e-11 Identities = 64/75 (85%), Gaps = 1/75 (1%) Strand=Plus/Plus Query 79625 TGCTTTCGATGAGCTTTGATCTCATTACCTCCCGCTTACTAAACGGGTGCTCT-ACCAAT 79683 ||||||| |||| | || |||| ||||||||||||||||||||||||||| ||||| Sbjct 90807 TGCTTTCATTGAGAGTCGAACTCAAGACCTCCCGCTTACTAAACGGGTGCTCTAACCAAC 90866 Query 79684 TGAGCTACGAAAGCA 79698 ||||||| ||||||| Sbjct 90867 TGAGCTATGAAAGCA 90881 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 547194487571000