Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Solanum_20lycopersicum_20[refseq_20GCF_5F000188115.3_202014-10-16]
3,145 sequences; 823,786,402 total letters
Query= NC_028491.1
Length=98392
Score E
Sequences producing significant alignments: (Bits) Value
seq11 158 8e-34
seq10 107 1e-18
seq7 102 5e-17
>seq11
Length=56302525
Score = 158 bits (174), Expect = 8e-34
Identities = 174/229 (76%), Gaps = 2/229 (1%)
Strand=Plus/Minus
Query 34480 CCGCCTCTAAGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAA 34539
|| ||||| | ||||||||||| ||||||||| |||||| || ||||| || |||| |
Sbjct 497471 CCTCCTCTCAAACGCAACACCAGATGGAGAGTTGACTCCTTCTGGATGTTGTAGTCTGCA 497412
Query 34540 AGTGTTCGCTCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGC 34599
|| || | | |||| |||||||||||||| ||||| || |||||||||||||| || ||
Sbjct 497411 AGAGTCCTCCCGTCCTCAAGTTGTTTACCAGCAAAGATCAAACGCTGTTGGTCTGGGGGA 497352
Query 34600 ACTCCCTCCTTGTCTGTGATCTTTTGTTTTAACGAT-AAAATTGTGTCTTCGCTCTCCAC 34658
| |||||||||||| ||| |||| ||| || | ||| || ||| ||||| ||
Sbjct 497351 ATACCCTCCTTGTCT-TGAATCTTTGCTTTCACATTGTCAATGGTATCTGAACTCTCAAC 497293
Query 34659 TTCCACGGTTATCGTTTTACCGGTTAACGTTTTCACAAAAATCTGCATG 34707
|||| || || || || || || || || || |||||||| ||||||
Sbjct 497292 CTCCAATGTAATTGTCTTCCCAGTCAAAGTCTTGACAAAAATTTGCATG 497244
Score = 156 bits (172), Expect = 3e-33
Identities = 173/228 (76%), Gaps = 2/228 (1%)
Strand=Plus/Minus
Query 34480 CCGCCTCTAAGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAA 34539
|| ||||| | ||||||||||| ||||||||| |||||| || ||||| || |||| |
Sbjct 497699 CCTCCTCTCAAACGCAACACCAGATGGAGAGTTGACTCCTTCTGGATGTTGTAGTCTGCA 497640
Query 34540 AGTGTTCGCTCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGC 34599
|| || | | | || |||||||||||||| ||||| || |||||||||||||| || ||
Sbjct 497639 AGAGTCCTCCCATCCTCAAGTTGTTTACCAGCAAAGATCAAACGCTGTTGGTCTGGGGGA 497580
Query 34600 ACTCCCTCCTTGTCTGTGATCTTTTGTTTTAACGAT-AAAATTGTGTCTTCGCTCTCCAC 34658
| |||||||||||| ||| |||| ||| || | ||| || ||| ||||| ||
Sbjct 497579 ATACCCTCCTTGTCT-TGAATCTTTGCTTTCACATTGTCAATGGTATCTGAACTCTCAAC 497521
Query 34659 TTCCACGGTTATCGTTTTACCGGTTAACGTTTTCACAAAAATCTGCAT 34706
|||| || || || || || || || || |||||||| ||||||||
Sbjct 497520 CTCCAATGTGATTGTCTTCCCAGTCAAAGTCTTCACAAAGATCTGCAT 497473
Score = 87.8 bits (96), Expect = 1e-12
Identities = 159/230 (69%), Gaps = 2/230 (1%)
Strand=Plus/Minus
Query 34479 GCCGCCTCTAAGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGA 34538
||| |||||||| || | || | || || || || || |||||||| |||||||
Sbjct 497244 GCCACCTCTAAGGCGAAGAACAAGGTGCAGGGTTGATTCTTTCTGAATGTTGTAATCTGC 497185
Query 34539 AAGTGTTCGCTCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGG 34598
| || | | || |||||||| || || ||||| || || | ||| ||||| || ||
Sbjct 497184 CAACGTCCTTCCATCCTCAAGTTGCTTTCCAGCAAAGATCAATCTCTGCTGGTCTGGAGG 497125
Query 34599 CACTCCCTCCTTGTCTGTGATCTTTTGTTTTAACGAT-AAAATTGTGTCTTCGCTCTCCA 34657
| |||||||||||| ||| |||| |||||| | || || ||| ||||| |
Sbjct 497124 AATACCCTCCTTGTCTTGTATC-TTTGCTTTAACATTGTCGATAGTATCTGAACTCTCAA 497066
Query 34658 CTTCCACGGTTATCGTTTTACCGGTTAACGTTTTCACAAAAATCTGCATG 34707
| |||| || || || || || || || || || ||||| || ||||||
Sbjct 497065 CCTCCAAAGTAATTGTCTTCCCTGTCAATGTCTTGACAAATATTTGCATG 497016
Score = 84.2 bits (92), Expect = 1e-11
Identities = 82/106 (77%), Gaps = 0/106 (0%)
Strand=Plus/Plus
Query 34480 CCGCCTCTAAGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAA 34539
|| ||||| | ||||||||||| ||||||||| |||||| || ||||| || ||| |
Sbjct 486588 CCTCCTCTCAAACGCAACACCAGATGGAGAGTTGACTCCTTCTGGATGTTGTAGTCTACA 486647
Query 34540 AGTGTTCGCTCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCT 34585
|| | | | | || |||||||||||||| ||||| || ||| |||
Sbjct 486648 AGGTTCCTCCCATCCTCAAGTTGTTTACCAGCAAAAATCAAATGCT 486693
>seq10
Length=65527505
Score = 107 bits (118), Expect = 1e-18
Identities = 141/193 (73%), Gaps = 2/193 (1%)
Strand=Plus/Plus
Query 34515 CTCCTTTTGAATGTTATAATCTGAAAGTGTTCGCTCGTCTTCAAGTTGTTTACCGGCAAA 34574
||||||||| ||||| || || | || || | | ||||||||||| || || |||||
Sbjct 1071388 CTCCTTTTGGATGTTGTAGTCCGCCAGAGTCCTTCCATCTTCAAGTTGCTTCCCTGCAAA 1071447
Query 34575 TATTAAACGCTGTTGGTCCGGCGGCACTCCCTCCTTGTCTGTGATCTTTTGTTTTAACGA 34634
|| | | ||| |||||||| || | |||||||||||| ||| ||| | || ||
Sbjct 1071448 GATCAGTCTCTGCTGGTCCGGTGGGATTCCCTCCTTGTC-CTGAATTTTAGCCTTCACAT 1071506
Query 34635 T-AAAATTGTGTCTTCGCTCTCCACTTCCACGGTTATCGTTTTACCGGTTAACGTTTTCA 34693
| ||| || || |||||||| |||| ||||| ||||| || || || || ||||
Sbjct 1071507 TGTCAATGGTATCAGAACTCTCCACCTCCAAAGTTATGGTTTTCCCAGTCAAGGTCTTCA 1071566
Query 34694 CAAAAATCTGCAT 34706
|||||||||||||
Sbjct 1071567 CAAAAATCTGCAT 1071579
Score = 98.7 bits (108), Expect = 6e-16
Identities = 160/228 (70%), Gaps = 2/228 (1%)
Strand=Plus/Plus
Query 34480 CCGCCTCTAAGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAA 34539
|| || | |||||| | ||||| || || || |||||| || ||||| ||||| | |
Sbjct 1072037 CCACCGCGAAGACGAAGGACCAAGTGAAGGGTTGACTCCTTCTGGATGTTGTAATCAGCA 1072096
Query 34540 AGTGTTCGCTCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGC 34599
|| || | |||| ||||| || || || ||||| || || | || ||||| || ||
Sbjct 1072097 AGGGTCCTGCCGTCCTCAAGCTGCTTGCCCGCAAAGATCAACCTTTGCTGGTCTGGGGGA 1072156
Query 34600 ACTCCCTCCTTGTCTGTGATCTTTTGTTTTAACGATAA-AATTGTGTCTTCGCTCTCCAC 34658
| || ||||||||| |||||| | ||||| | ||| ||||| ||| || ||
Sbjct 1072157 ATGCCTTCCTTGTCTTGGATCTTA-GCCTTAACATTGTCAATGGTGTCGGAGCTTTCAAC 1072215
Query 34659 TTCCACGGTTATCGTTTTACCGGTTAACGTTTTCACAAAAATCTGCAT 34706
|| | ||| || || || || || || || ||||||||||| |||||
Sbjct 1072216 CTCAAGGGTGATGGTCTTTCCAGTCAAAGTCTTCACAAAAATTTGCAT 1072263
Score = 84.2 bits (92), Expect = 1e-11
Identities = 157/228 (69%), Gaps = 2/228 (1%)
Strand=Plus/Plus
Query 34480 CCGCCTCTAAGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAA 34539
|| || | ||||| ||| || | ||| | || |||||||||||| || ||||| | |
Sbjct 65066504 CCTCCACAAAGACTCAAGACAAGATGAATTGTAGACTCCTTTTGAATATTGTAATCAGCA 65066563
Query 34540 AGTGTTCGCTCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGC 34599
||||| | || || | || |||||| || |||||| ||| | ||||| || | ||
Sbjct 65066564 AGTGTATGATCATCCTTAAATTGTTTTCCACCAAATACTAATCTTTGTTGATCTGAGGGA 65066623
Query 34600 ACTCCCTCCTTGTCTGTGATCTTTTGTTTTAACGAT-AAAATTGTGTCTTCGCTCTCCAC 34658
| ||| || |||||| ||| |||| |||||| | ||| |||| |||| |||
Sbjct 65066624 ATTCCTTCTTTGTCTTCAATC-TTTGCTTTAACATTGTTAATGGTGTTGGAACTCTTCAC 65066682
Query 34659 TTCCACGGTTATCGTTTTACCGGTTAACGTTTTCACAAAAATCTGCAT 34706
|||| || || || || || | | ||||| ||||| || |||||
Sbjct 65066683 ATCCAGAGTAATGGTCTTTCCAATGAGAGTTTTAACAAAGATTTGCAT 65066730
>seq7
Length=68045021
Score = 102 bits (112), Expect = 5e-17
Identities = 153/213 (72%), Gaps = 6/213 (3%)
Strand=Plus/Minus
Query 34497 CACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTG--AAAGTGTTCGCTCGTCT 34554
|||||| || || || ||||||||| |||||||| || | |||||| || | ||
Sbjct 66407238 CACCAAGTGCAGGGTCGACTCCTTTTGGATGTTATAGTCCGCCAAAGTG--CGGCCATCC 66407181
Query 34555 TCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGCACTCCCTCCTTGTCT 34614
|| || || || || ||||| || || | ||| ||||| || || | ||||||||||||
Sbjct 66407180 TCGAGCTGCTTGCCAGCAAAAATCAACCTCTGCTGGTCTGGGGGAATACCCTCCTTGTCT 66407121
Query 34615 GTGATCTTTTGTTTTAACGAT-AAAATTGTGTCTTCGCTCTCCACTTCCACGGTTATCGT 34673
|||| || | || || | ||| ||||| |||||| || |||| ||| || ||
Sbjct 66407120 TGGATC-TTGGCCTTGACATTGTCAATGGTGTCGGAGCTCTCAACCTCCAGGGTGATGGT 66407062
Query 34674 TTTACCGGTTAACGTTTTCACAAAAATCTGCAT 34706
||| ||||| | || |||||||| || |||||
Sbjct 66407061 TTTCCCGGTAAGGGTCTTCACAAAGATTTGCAT 66407029
Score = 100 bits (110), Expect = 2e-16
Identities = 155/219 (71%), Gaps = 2/219 (1%)
Strand=Plus/Minus
Query 34489 AGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAAAGTGTTCGC 34548
||||| | |||||||||||| ||| |||||| || ||||| || || | || || ||
Sbjct 66406562 AGACGGAGCACCAAATGGAGGGTGGACTCCTTCTGGATGTTGTAGTCAGCTAGGGTGCGG 66406503
Query 34549 TCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGCACTCCCTCC 34608
| ||||| | || || || ||||| || || | ||| ||||| || || | || |||
Sbjct 66406502 CCATCTTCCAACTGCTTTCCTGCAAAGATCAACCTCTGCTGGTCTGGGGGAATGCCTTCC 66406443
Query 34609 TTGTCTGTGATCTTTTGTTTTAACGAT-AAAATTGTGTCTTCGCTCTCCACTTCCACGGT 34667
|| || |||| || | || ||| | ||| |||||| ||| || || || | |||
Sbjct 66406442 TTATCCTGGATC-TTAGCCTTGACGTTGTCAATGGTGTCTGAGCTTTCGACCTCAAGGGT 66406384
Query 34668 TATCGTTTTACCGGTTAACGTTTTCACAAAAATCTGCAT 34706
||||| ||||| || | || ||||| || ||||||||
Sbjct 66406383 AATCGTCTTACCCGTGAGAGTCTTCACGAAGATCTGCAT 66406345
Score = 98.7 bits (108), Expect = 6e-16
Identities = 139/193 (72%), Gaps = 2/193 (1%)
Strand=Plus/Minus
Query 34515 CTCCTTTTGAATGTTATAATCTGAAAGTGTTCGCTCGTCTTCAAGTTGTTTACCGGCAAA 34574
|||||| || ||||| || || | ||| || || |||| || || || ||||| || ||
Sbjct 66406992 CTCCTTCTGGATGTTGTAGTCGGCAAGGGTGCGGCCGTCCTCGAGCTGCTTACCAGCGAA 66406933
Query 34575 TATTAAACGCTGTTGGTCCGGCGGCACTCCCTCCTTGTCTGTGATCTTTTGTTTTAACGA 34634
|| || | ||| ||||| | || | |||||||||||| |||| || | |||||
Sbjct 66406932 AATCAACCTCTGCTGGTCTGAAGGAATTCCCTCCTTGTCCTGGATC-TTAGCCTTAACAT 66406874
Query 34635 TA-AAATTGTGTCTTCGCTCTCCACTTCCACGGTTATCGTTTTACCGGTTAACGTTTTCA 34693
|| ||| ||||| ||| ||||| |||| || || || || ||||| | || || |
Sbjct 66406873 TATCAATGGTGTCGGAGCTTTCCACCTCCAAAGTGATGGTCTTTCCGGTGAGGGTCTTAA 66406814
Query 34694 CAAAAATCTGCAT 34706
|||||||||||||
Sbjct 66406813 CAAAAATCTGCAT 66406801
Score = 95.1 bits (104), Expect = 8e-15
Identities = 154/219 (70%), Gaps = 2/219 (1%)
Strand=Plus/Minus
Query 34489 AGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAAAGTGTTCGC 34548
||||| | |||||||||||| ||| |||||| || ||||| ||||| | || || ||
Sbjct 66406334 AGACGGAGCACCAAATGGAGGGTGGACTCCTTCTGGATGTTGTAATCAGCTAGAGTACGT 66406275
Query 34549 TCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGCACTCCCTCC 34608
|||| || | || || || || || || | | || || ||||| || | ||| |||
Sbjct 66406274 CCGTCCTCCAACTGCTTTCCAGCGAAGATAAGCCTTTGCTGATCCGGGGGAATTCCTTCC 66406215
Query 34609 TTGTCTGTGATCTTTTGTTTTAACGAT-AAAATTGTGTCTTCGCTCTCCACTTCCACGGT 34667
|| || |||| || | |||||| | ||||| || || ||||| || | |||
Sbjct 66406214 TTATCCTGGATC-TTAGCCTTAACGTTGTCGATTGTATCAGAACTTTCCACCTCTAGGGT 66406156
Query 34668 TATCGTTTTACCGGTTAACGTTTTCACAAAAATCTGCAT 34706
|| || || ||||| | ||||||||||| ||||||||
Sbjct 66406155 GATAGTCTTTCCGGTGAGAGTTTTCACAAAGATCTGCAT 66406117
Score = 86.0 bits (94), Expect = 4e-12
Identities = 143/204 (70%), Gaps = 2/204 (1%)
Strand=Plus/Minus
Query 34504 TGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAAAGTGTTCGCTCGTCTTCAAGTTGT 34563
|| || ||| |||||| || || || || || | ||| || || | || ||||| ||
Sbjct 66407459 TGCAGGGTGGACTCCTTCTGGATATTGTAGTCAGCAAGGGTGCGGCCATCCTCAAGCTGC 66407400
Query 34564 TTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGCACTCCCTCCTTGTCTGTGATCTTT 34623
||||| || || || || | ||| ||||| || || | ||||||||||| ||| ||
Sbjct 66407399 TTACCAGCGAAAATCAACCTCTGCTGGTCTGGTGGGATCCCCTCCTTGTC-CTGAATCTT 66407341
Query 34624 TGTTTTAACGAT-AAAATTGTGTCTTCGCTCTCCACTTCCACGGTTATCGTTTTACCGGT 34682
| ||| || | || ||||| |||||||| |||| || || || || |||||
Sbjct 66407340 AGCTTTCACATTGTCGATGGTGTCAGAACTCTCCACCTCCAAAGTGATGGTCTTCCCGGT 66407281
Query 34683 TAACGTTTTCACAAAAATCTGCAT 34706
|| || |||||||| ||||||||
Sbjct 66407280 CAAGGTCTTCACAAAGATCTGCAT 66407257
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 314717536512785
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |