Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Solanum_20lycopersicum_20[refseq_20GCF_5F000188115.3_202014-10-16]
3,145 sequences; 823,786,402 total letters
Query= NC_028701.2
Length=33509
Score E
Sequences producing significant alignments: (Bits) Value
seq1141 89.7 1e-13
>seq1141
Length=3271
Score = 89.7 bits (98), Expect = 1e-13
Identities = 272/412 (66%), Gaps = 14/412 (3%)
Strand=Plus/Minus
Query 2150 ATTGAACTGATCGCCAGTCCAGAAAGGATAGGCTTCATGTTCTTCACTGGAAGGCGTCGA 2209
||||||| | |||||| |||||| || || ||||| || | || |||||||||||
Sbjct 2887 ATTGAACAGCGCGCCAGACCAGAACGGGTACGCTTCGTGGGCAAGGCTCGAAGGCGTCGA 2828
Query 2210 AAAGTAGGTGCGGCGCAGTCCTTTTTGTG--TCGCCATGCCTGCGGCCACTGAGCGCAGT 2267
|| || || | ||| ||| ||| | ||||| || | |||||| ||||||
Sbjct 2827 GAAATAAGTCTGCCGC--CACTTCGAGTGGATGGCCATCCCGGAGGCCACCTTGCGCAG- 2771
Query 2268 TTGATGAAATTACT-GATCCAGAAGGCTTCATCCAGGTACAGATCGCCGGTGTAGCTCTG 2326
| || || || |||||||||| || ||||| || || | |||| ||||||||
Sbjct 2770 CTCTTGGAAGCGCTGGATCCAGAAGTACTCGTCCAGATAGAGGTTGCCGTGATAGCTCTG 2711
Query 2327 GGCCGTCGCG-GCGGAGGTGCCGAGAAAATACAGGATCGCACCGTTGCTTAACTCAATGG 2385
|| || ||| ||| |||||||| |||||||| |||| ||||| ||| | || |
Sbjct 2710 CGCGGT-GCGTGCGTTTGTGCCGAGGAAATACAGCGTCGCGCCGTTCGGCAACACCATCG 2652
Query 2386 CATCACCGCCCTTAAGTTCTACTC---CTATTTCCCTTGCCAGCTTCTGAATGAATCGCT 2442
| ||||||| || || || | | ||| | || | || ||| || |||
Sbjct 2651 GCT---CGCCCTTCAGCTCCACGCCGGCAGCATCCTTCGCGAACTGGATGATGTATTGCT 2595
Query 2443 TGAACTGGAACGCCTGGGCGCGGCTGGCTGACAGGAATATCTGGTTATTTCCGGTTTCCA 2502
|||| | ||||| || |||||| |||| ||| ||||| || || || ||
Sbjct 2594 TGAAAACGTGGGCCTGCGCCTTGCTGGCCGACAAGAAAATCTGATTGCGCCCCGTGGTCA 2535
Query 2503 GCGCACGCAACAGCGCTTCGCGGGCAAAGTACCAAGTGGCACCAATTTGGCG 2554
|||| | | || || || || || ||||| |||||||| || |||||
Sbjct 2534 ACGCATCAATGAAGGCCTCCCGTGCGAAATACCACGTGGCACCGATCTGGCG 2483
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 107103199880790
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |