Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Solanum_20lycopersicum_20[refseq_20GCF_5F000188115.3_202014-10-16] 3,145 sequences; 823,786,402 total letters Query= NC_028701.2 Length=33509 Score E Sequences producing significant alignments: (Bits) Value seq1141 89.7 1e-13 >seq1141 Length=3271 Score = 89.7 bits (98), Expect = 1e-13 Identities = 272/412 (66%), Gaps = 14/412 (3%) Strand=Plus/Minus Query 2150 ATTGAACTGATCGCCAGTCCAGAAAGGATAGGCTTCATGTTCTTCACTGGAAGGCGTCGA 2209 ||||||| | |||||| |||||| || || ||||| || | || ||||||||||| Sbjct 2887 ATTGAACAGCGCGCCAGACCAGAACGGGTACGCTTCGTGGGCAAGGCTCGAAGGCGTCGA 2828 Query 2210 AAAGTAGGTGCGGCGCAGTCCTTTTTGTG--TCGCCATGCCTGCGGCCACTGAGCGCAGT 2267 || || || | ||| ||| ||| | ||||| || | |||||| |||||| Sbjct 2827 GAAATAAGTCTGCCGC--CACTTCGAGTGGATGGCCATCCCGGAGGCCACCTTGCGCAG- 2771 Query 2268 TTGATGAAATTACT-GATCCAGAAGGCTTCATCCAGGTACAGATCGCCGGTGTAGCTCTG 2326 | || || || |||||||||| || ||||| || || | |||| |||||||| Sbjct 2770 CTCTTGGAAGCGCTGGATCCAGAAGTACTCGTCCAGATAGAGGTTGCCGTGATAGCTCTG 2711 Query 2327 GGCCGTCGCG-GCGGAGGTGCCGAGAAAATACAGGATCGCACCGTTGCTTAACTCAATGG 2385 || || ||| ||| |||||||| |||||||| |||| ||||| ||| | || | Sbjct 2710 CGCGGT-GCGTGCGTTTGTGCCGAGGAAATACAGCGTCGCGCCGTTCGGCAACACCATCG 2652 Query 2386 CATCACCGCCCTTAAGTTCTACTC---CTATTTCCCTTGCCAGCTTCTGAATGAATCGCT 2442 | ||||||| || || || | | ||| | || | || ||| || ||| Sbjct 2651 GCT---CGCCCTTCAGCTCCACGCCGGCAGCATCCTTCGCGAACTGGATGATGTATTGCT 2595 Query 2443 TGAACTGGAACGCCTGGGCGCGGCTGGCTGACAGGAATATCTGGTTATTTCCGGTTTCCA 2502 |||| | ||||| || |||||| |||| ||| ||||| || || || || Sbjct 2594 TGAAAACGTGGGCCTGCGCCTTGCTGGCCGACAAGAAAATCTGATTGCGCCCCGTGGTCA 2535 Query 2503 GCGCACGCAACAGCGCTTCGCGGGCAAAGTACCAAGTGGCACCAATTTGGCG 2554 |||| | | || || || || || ||||| |||||||| || ||||| Sbjct 2534 ACGCATCAATGAAGGCCTCCCGTGCGAAATACCACGTGGCACCGATCTGGCG 2483 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 107103199880790