Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Solanum_20lycopersicum_20[refseq_20GCF_5F000188115.3_202014-10-16] 3,145 sequences; 823,786,402 total letters Query= NC_028896.1 Length=32675 Score E Sequences producing significant alignments: (Bits) Value seq1141 201 2e-47 >seq1141 Length=3271 Score = 201 bits (222), Expect = 2e-47 Identities = 549/823 (67%), Gaps = 22/823 (3%) Strand=Plus/Plus Query 19847 CGCATCCGCGATATCCTGAAATCCCGCCAGATTGGCGCGACGTTTTATTTTTCCCGCGAG 19906 || |||||| || | ||||| ||||||||| || || |||| ||||| | || ||| Sbjct 2459 CGTATCCGCAATGTTCTGAAGAGCCGCCAGATCGGTGCCACGTGGTATTTCGCACGGGAG 2518 Query 19907 GCGCTGCTGCGCGCCCTGAAAACCGGTCATAACCAGATTTTTCTGTCGGCCAGTAAAACG 19966 || | | || ||| || || | || |||||||| |||||||||| || || Sbjct 2519 GCCTTCATTGATGCGTTGACCACGGGGCGCAATCAGATTTTCTTGTCGGCCAGCAAGGCG 2578 Query 19967 CAGGCGTATGTGTTCCGCGAATACATCATCGCCTTTGCCC-GGCTGGTT--GACGTTGAC 20023 ||||| | || ||| ||||||||||| || || || || | | ||| || Sbjct 2579 CAGGCCCACGTTTTCAAGCAATACATCATCCAGTTCGCGAAGGATGCTGCCGGCGTGGAG 2638 Query 20024 CTGACCGGTGACCCGATTGTCCTGGGCAATAACGGCGCAAAACTGATTTTTCTCGGCACC 20083 |||| || || ||||| || || || |||||| | ||| ||| |||||||| Sbjct 2639 CTGAAGGGCGAGCCGATGGTGTTGCCGAA---CGGCGCGACGCTGTATTTCCTCGGCACA 2695 Query 20084 AACTCCAACACCGCACAGAGCCATAACGGCGACCTGTACGTCGACGAGATTTTCTGGATC 20143 ||| | |||||| |||||| || ||||| |||| || | |||||| ||||||||| Sbjct 2696 AACGCACGCACCGCGCAGAGCTATCACGGCAACCTCTATCTGGACGAGTACTTCTGGATC 2755 Query 20144 CCGAATTTTCAGGTACTGCGTAAGGTGGCATCAGGTATGGCCTCACAGAGTCACCTGCGC 20203 | | || || | ||||| |||||||| || || |||||| || | ||| Sbjct 2756 CAGCGCTTCCAAGAGCTGCGCAAGGTGGCCTCCGGGATGGCCATCCACTCGAAGTGGCGG 2815 Query 20204 TCGACCTATTTCTCCACCCCGTCCACGCTGGCGCACGACGCCTACCCGTTCTGGTCGGGT 20263 ||| |||||||| || || || | || || ||||| || |||||||||||||| || Sbjct 2816 CAGACTTATTTCTCGACGCCTTCGAGCCTTGCCCACGAAGCGTACCCGTTCTGGTCTGGC 2875 Query 20264 GAACTGTTCAACCGGGGACGCGCCAGCGCCGCCGAACGCGTGGAAATCGACGTCAGTCAT 20323 | |||||||| || || ||| || | || | | | | |||||||| || Sbjct 2876 GCGCTGTTCAATCGCGG--GCGGAAG-AAGGAAGACCACATCCGCGTTGACGTCAGCCA- 2931 Query 20324 AACGCCCTTGCCGGA-GGTCTTCTCTGTGCGGACGGCCAGTGGCGGCAGATTGTCACCAT 20382 || ||||| ||| || | | || |||||||| |||||| ||||||||||| | Sbjct 2932 CGCGAACTTGCAGGACGGCCGGCGGTGCGCGGACGGTCAGTGGAAACAGATTGTCACGGT 2991 Query 20383 TGAGGACGCCCTGAAAGGCGGCTGCACGCTGTTCGACATTGAGCAGCTCAAACGTGAAAA 20442 || |||||| | || ||||||| ||||||||| | || ||| | | || | Sbjct 2992 GGAAGACGCCATCGCCGGTGGCTGCAACCTGTTCGACCTCGACCAGTTGCGGCTGGAGTA 3051 Query 20443 CAGCGCCGACGATTTTAAAAACCTGTTCATGTGTGAATTTGTTGACGACAAGGCGTCGGT 20502 ||||| | || || | |||||| | ||||| | || | || |||| ||| || || Sbjct 3052 CAGCGATGCGGACTTCGAGAACCTGCTGATGTGCGGCTTCATCGATGACACGGCCTCTGT 3111 Query 20503 GTTCCCGTTCGAGGAGCTGCAACGTTGCATGGTCGACACGCT-GGAAGAATGGGAAGACT 20561 |||||| | | ||| || |||||||||||| ||| ||| | ||||| |||| Sbjct 3112 CTTCCCGCTGTCGATGCTCATGCGCGGCATGGTCGACA-GCTGGGAGGTGTGGGAGGACT 3170 Query 20562 ATGCGCCGTTTGCCG-CAAATCCGTTCGGCTCCCGCCCGGTATGGATTGGTTACGACCCG 20620 | |||| || | || | || ||||| || ||||||| | || ||||||||| Sbjct 3171 -TCCGCCATTGGTCGCCCCGCCCTTTCGGTAATCGTGAGGTATGGGTGGGCTACGACCCG 3229 Query 20621 TCAC----ACCGTGGCGACAGCGCCG-GATGCGTGGTACTGGC 20658 || | |||||||||| |||| | || ||||| |||| Sbjct 3230 -AACGGCGGCGGTGGCGACAGTGCCGCGCTG-GTGGTCGTGGC 3270 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 104434499552130