Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Solanum_20lycopersicum_20[refseq_20GCF_5F000188115.3_202014-10-16] 3,145 sequences; 823,786,402 total letters Query= NC_028943.1 Length=29237 Score E Sequences producing significant alignments: (Bits) Value seq1141 210 4e-50 >seq1141 Length=3271 Score = 210 bits (232), Expect = 4e-50 Identities = 551/823 (67%), Gaps = 22/823 (3%) Strand=Plus/Minus Query 8836 GCCAGCACCACGCATC-CGGCACTGTCGCCACGGT----GTGACGGGTCGTAACCAATCC 8890 |||| ||||| || | ||||||||||||||| | || ||||||||| || | || Sbjct 3270 GCCACGACCAC-CAGCGCGGCACTGTCGCCACCGCCGCCGTT-CGGGTCGTAGCCCACCC 3213 Query 8891 AGACCGGGCGGGAGCCGAACGGATTCG-CGGCAAACGGCGCATAGTCTTCCCATTCTTCC 8949 | ||| || ||||| || | || | || |||| | |||| ||||| | ||| Sbjct 3212 ATACCTCACGATTACCGAAAGGGCGGGGCGACCAATGGCGGA-AGTCCTCCCACACCTCC 3154 Query 8950 -AGCGTGTCGACCATGCAGCGTTGCAGCTCCTCGAACGGGAACACCGACGCCTTGTCGTC 9008 ||| |||||||||||| ||| ||| | | |||||| || || ||| |||| || Sbjct 3153 CAGC-TGTCGACCATGCCGCGCATGAGCATCGACAGCGGGAAGACAGAGGCCGTGTCATC 3095 Query 9009 AACAAATTCACACATGAACAGGTTTTTAAAATCGTCGGCGCTGTTTTCGCGTTTAAGCTG 9068 | || | ||||| | |||||| | || || | |||||| || | | ||| Sbjct 3094 GATGAAGCCGCACATCAGCAGGTTCTCGAAGTCCGCATCGCTGTACTCCAGCCGCAACTG 3035 Query 9069 CTCAATGTCGAACAGCGTGCAGCCACCTTTCAGGGCGTCCTCAATGGTGACAATCTGCCG 9128 || | ||||||||| |||||||||| | |||||| || | ||||||||||| Sbjct 3034 GTCGAGGTCGAACAGGTTGCAGCCACCGGCGATGGCGTCTTCCACCGTGACAATCTGTTT 2975 Query 9129 CCACTGACCGTCCGCACAGAGAAGCCCA-CCGGCAAGAGCGTTATGACTGACGTCGATTT 9187 ||||||||||||||| || | | || || ||||| || || |||||||| | Sbjct 2974 CCACTGACCGTCCGCGCACCGCCGGCCGTCCTGCAAGTTCGCG-TGGCTGACGTCAACGC 2916 Query 9188 CCACGCGTTCGGCGGCGCTGGCGCGTCCCCGGTTGAACAGTTCACCCGACCAGAACGGGT 9247 | | | || | || ||| || || |||||||| | || ||||||||||||| Sbjct 2915 GGATGTGGTCTTCCTT-CTTCCGC--CCGCGATTGAACAGCGCGCCAGACCAGAACGGGT 2859 Query 9248 AGGCGTCGTGCGCCAGCGTGGACGGGGTGGAGAAATAGGTCGAGCGCAGGTGACTCTGTG 9307 | || ||||| || || | || || || |||||||| ||| ||| | || Sbjct 2858 ACGCTTCGTGGGCAAGGCTCGAAGGCGTCGAGAAATAAGTCTGCCGCCACTTCGAGTGGA 2799 Query 9308 AGGCCATACCTGATGCCACCTTACGCAGTACCTGAAAATTCGGTATCCAGAAAATCTCGT 9367 |||||| || || |||||||| ||||| | || || | | |||||||| ||||| Sbjct 2798 TGGCCATCCCGGAGGCCACCTTGCGCAGCTCTTGGAAGCGCTGGATCCAGAAGTACTCGT 2739 Query 9368 CGACGTACAGGTCGCCGTTATGGCTCTGCGCGGTGTTGGAGTTGGTGCCGAGAAAAATCA 9427 | | || |||| ||||| || ||||||||||||| | ||| |||||||| ||| || Sbjct 2738 CCAGATAGAGGTTGCCGTGATAGCTCTGCGCGGTGCGTGCGTTTGTGCCGAGGAAATACA 2679 Query 9428 GTTTTGCGCCGTTATTGCCCAGGACAATCGGGTCACCGGTCAGGTCAACGTC--AACCAG 9485 | | |||||| || || || ||||| || || |||| || ||| | | || Sbjct 2678 GCGTCGCGCCG---TTCGGCAACACCATCGGCTCGCCCTTCAGCTCCACGCCGGCAGCAT 2622 Query 9486 CC-GGGCAAAGGCGATGATGTATTCGCGGAACACATACGCCTGCGTTTTACTGGCCGACA 9544 || || || ||||||||||| ||| || | ||||||| || |||||||||| Sbjct 2621 CCTTCGCGAACTGGATGATGTATTGCTTGAAAACGTGGGCCTGCGCCTTGCTGGCCGACA 2562 Query 9545 GAAAAATCTGGTTATGACCGGTTTTCAGGGCGCGCAGCAGCGCCTCGCGGGAAAAATAAA 9604 |||||||| || | || || ||| || | | ||||| || | ||||| Sbjct 2561 AGAAAATCTGATTGCGCCCCGTGGTCAACGCATCAATGAAGGCCTCCCGTGCGAAATACC 2502 Query 9605 ACGTCGCGCCAATCTGGCGGGATTTCAGGATATCGCGGATGCG 9647 |||| || || ||||||||| ||||| | || |||||| || Sbjct 2501 ACGTGGCACCGATCTGGCGGCTCTTCAGAACATTGCGGATACG 2459 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 93433310427510