Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Solanum_20lycopersicum_20[refseq_20GCF_5F000188115.3_202014-10-16]
3,145 sequences; 823,786,402 total letters
Query= NC_028943.1
Length=29237
Score E
Sequences producing significant alignments: (Bits) Value
seq1141 210 4e-50
>seq1141
Length=3271
Score = 210 bits (232), Expect = 4e-50
Identities = 551/823 (67%), Gaps = 22/823 (3%)
Strand=Plus/Minus
Query 8836 GCCAGCACCACGCATC-CGGCACTGTCGCCACGGT----GTGACGGGTCGTAACCAATCC 8890
|||| ||||| || | ||||||||||||||| | || ||||||||| || | ||
Sbjct 3270 GCCACGACCAC-CAGCGCGGCACTGTCGCCACCGCCGCCGTT-CGGGTCGTAGCCCACCC 3213
Query 8891 AGACCGGGCGGGAGCCGAACGGATTCG-CGGCAAACGGCGCATAGTCTTCCCATTCTTCC 8949
| ||| || ||||| || | || | || |||| | |||| ||||| | |||
Sbjct 3212 ATACCTCACGATTACCGAAAGGGCGGGGCGACCAATGGCGGA-AGTCCTCCCACACCTCC 3154
Query 8950 -AGCGTGTCGACCATGCAGCGTTGCAGCTCCTCGAACGGGAACACCGACGCCTTGTCGTC 9008
||| |||||||||||| ||| ||| | | |||||| || || ||| |||| ||
Sbjct 3153 CAGC-TGTCGACCATGCCGCGCATGAGCATCGACAGCGGGAAGACAGAGGCCGTGTCATC 3095
Query 9009 AACAAATTCACACATGAACAGGTTTTTAAAATCGTCGGCGCTGTTTTCGCGTTTAAGCTG 9068
| || | ||||| | |||||| | || || | |||||| || | | |||
Sbjct 3094 GATGAAGCCGCACATCAGCAGGTTCTCGAAGTCCGCATCGCTGTACTCCAGCCGCAACTG 3035
Query 9069 CTCAATGTCGAACAGCGTGCAGCCACCTTTCAGGGCGTCCTCAATGGTGACAATCTGCCG 9128
|| | ||||||||| |||||||||| | |||||| || | |||||||||||
Sbjct 3034 GTCGAGGTCGAACAGGTTGCAGCCACCGGCGATGGCGTCTTCCACCGTGACAATCTGTTT 2975
Query 9129 CCACTGACCGTCCGCACAGAGAAGCCCA-CCGGCAAGAGCGTTATGACTGACGTCGATTT 9187
||||||||||||||| || | | || || ||||| || || |||||||| |
Sbjct 2974 CCACTGACCGTCCGCGCACCGCCGGCCGTCCTGCAAGTTCGCG-TGGCTGACGTCAACGC 2916
Query 9188 CCACGCGTTCGGCGGCGCTGGCGCGTCCCCGGTTGAACAGTTCACCCGACCAGAACGGGT 9247
| | | || | || ||| || || |||||||| | || |||||||||||||
Sbjct 2915 GGATGTGGTCTTCCTT-CTTCCGC--CCGCGATTGAACAGCGCGCCAGACCAGAACGGGT 2859
Query 9248 AGGCGTCGTGCGCCAGCGTGGACGGGGTGGAGAAATAGGTCGAGCGCAGGTGACTCTGTG 9307
| || ||||| || || | || || || |||||||| ||| ||| | ||
Sbjct 2858 ACGCTTCGTGGGCAAGGCTCGAAGGCGTCGAGAAATAAGTCTGCCGCCACTTCGAGTGGA 2799
Query 9308 AGGCCATACCTGATGCCACCTTACGCAGTACCTGAAAATTCGGTATCCAGAAAATCTCGT 9367
|||||| || || |||||||| ||||| | || || | | |||||||| |||||
Sbjct 2798 TGGCCATCCCGGAGGCCACCTTGCGCAGCTCTTGGAAGCGCTGGATCCAGAAGTACTCGT 2739
Query 9368 CGACGTACAGGTCGCCGTTATGGCTCTGCGCGGTGTTGGAGTTGGTGCCGAGAAAAATCA 9427
| | || |||| ||||| || ||||||||||||| | ||| |||||||| ||| ||
Sbjct 2738 CCAGATAGAGGTTGCCGTGATAGCTCTGCGCGGTGCGTGCGTTTGTGCCGAGGAAATACA 2679
Query 9428 GTTTTGCGCCGTTATTGCCCAGGACAATCGGGTCACCGGTCAGGTCAACGTC--AACCAG 9485
| | |||||| || || || ||||| || || |||| || ||| | | ||
Sbjct 2678 GCGTCGCGCCG---TTCGGCAACACCATCGGCTCGCCCTTCAGCTCCACGCCGGCAGCAT 2622
Query 9486 CC-GGGCAAAGGCGATGATGTATTCGCGGAACACATACGCCTGCGTTTTACTGGCCGACA 9544
|| || || ||||||||||| ||| || | ||||||| || ||||||||||
Sbjct 2621 CCTTCGCGAACTGGATGATGTATTGCTTGAAAACGTGGGCCTGCGCCTTGCTGGCCGACA 2562
Query 9545 GAAAAATCTGGTTATGACCGGTTTTCAGGGCGCGCAGCAGCGCCTCGCGGGAAAAATAAA 9604
|||||||| || | || || ||| || | | ||||| || | |||||
Sbjct 2561 AGAAAATCTGATTGCGCCCCGTGGTCAACGCATCAATGAAGGCCTCCCGTGCGAAATACC 2502
Query 9605 ACGTCGCGCCAATCTGGCGGGATTTCAGGATATCGCGGATGCG 9647
|||| || || ||||||||| ||||| | || |||||| ||
Sbjct 2501 ACGTGGCACCGATCTGGCGGCTCTTCAGAACATTGCGGATACG 2459
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 93433310427510
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |