Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Solanum_20lycopersicum_20[refseq_20GCF_5F000188115.3_202014-10-16] 3,145 sequences; 823,786,402 total letters Query= NC_029003.2 Length=29733 Score E Sequences producing significant alignments: (Bits) Value seq1141 297 4e-76 >seq1141 Length=3271 Score = 297 bits (328), Expect = 4e-76 Identities = 555/804 (69%), Gaps = 16/804 (2%) Strand=Plus/Minus Query 1740 CGGCACTGTCGCC---GGTGTGGGACGGGTCGTAGCCAATCCAGACCGGGCGCGAGCCGA 1796 ||||||||||||| | | | |||||||||||| | ||| ||| || |||| Sbjct 3254 CGGCACTGTCGCCACCGCCGCCGTTCGGGTCGTAGCCCACCCATACCTCACGATTACCGA 3195 Query 1797 ATGGATGGT-CGGCGAACGGGGCGAAGTCCTCCCATGTTTCCATCACGTCGACCATGCAG 1855 | || || || | || || | |||||||||||| ||| ||||||||||| | Sbjct 3194 AAGGGCGGGGCGACCAATGGCG-GAAGTCCTCCCACACCTCCCAGCTGTCGACCATGCCG 3136 Query 1856 CGCTGCAGCTCCTCGAACGGGAATACCGATGCCTTATCGTCGACAAACTCGCACATAAAC 1915 ||| ||| | | |||||| || || ||| | || |||| || ||||||| | | Sbjct 3135 CGCATGAGCATCGACAGCGGGAAGACAGAGGCCGTGTCATCGATGAAGCCGCACATCAGC 3076 Query 1916 AGGTTCTTAAAGTCCTCATCACTGTTTTCGCGTCTGAGCTGGTCGAGGTCGAACAGGGTG 1975 ||||||| |||||| |||| |||| || | | | ||||||||||||||||||| || Sbjct 3075 AGGTTCTCGAAGTCCGCATCGCTGTACTCCAGCCGCAACTGGTCGAGGTCGAACAGGTTG 3016 Query 1976 CAGCCACCGGCAAGGGCGTCCTCAATAGTGACAATCTGCCGCCACTGTCCGTCAGCGCAA 2035 ||||||||||| | |||||| || | ||||||||||| |||||| ||||| ||||| Sbjct 3015 CAGCCACCGGCGATGGCGTCTTCCACCGTGACAATCTGTTTCCACTGACCGTCCGCGCAC 2956 Query 2036 AGAAGCCCA-CCGGCGAGCGCGCTGTGACTGATGTCGATTTCGATGCGGTCAGCGGCACT 2094 | | || || || || ||| ||| |||| ||| | |||| |||| | | Sbjct 2955 CGCCGGCCGTCCTGCAAGTTCGC-GTGGCTGACGTCAACGCGGATGTGGTCTTCCTTCTT 2897 Query 2095 GGCGCGCCCCTTGTTGAACAGCTCGCCAGACCAGAAGGGGTAAGCGCCGTGCGCCAGCGT 2154 ||||| ||||||||| ||||||||||||| ||||| || |||| || || | Sbjct 2896 C---CGCCCGCGATTGAACAGCGCGCCAGACCAGAACGGGTACGCTTCGTGGGCAAGGCT 2840 Query 2155 GGAAGGTGTCGAAAAGTAAGTTGAGCGCAGATGCTTTTGCGAGGCCATGCCCGATGCGAC 2214 ||||| ||||| || ||||| ||| | | || |||||| || || || || Sbjct 2839 CGAAGGCGTCGAGAAATAAGTCTGCCGCCACTTCGAGTGGATGGCCATCCCGGAGGCCAC 2780 Query 2215 TTTGCGCAGCTTCTGAAAATTCGGGATCCAGAATATTTCATCGACATACAGGTCGCCGTT 2274 |||||||||| || || | |||||||||| || || | ||| |||| ||||| Sbjct 2779 CTTGCGCAGCTCTTGGAAGCGCTGGATCCAGAAGTACTCGTCCAGATAGAGGTTGCCGTG 2720 Query 2275 ATGGCTCTGTGCGGTGTTGGAATTGGTGCCGAGAAAAATCAGCTTTGCGCCGTTGTTGCC 2334 || |||||| |||||| | || |||||||| ||| |||| | |||||||| || Sbjct 2719 ATAGCTCTGCGCGGTGCGTGCGTTTGTGCCGAGGAAATACAGCGTCGCGCCGTTCG-GC- 2662 Query 2335 GATGACAATCGGGTCGCCGGTCAGGTCGACGTCAAC--CAGTCG-CGCAAACTGGATGAT 2391 | || ||||| ||||| |||| || ||| | | || | ||| ||||||||||| Sbjct 2661 -AACACCATCGGCTCGCCCTTCAGCTCCACGCCGGCAGCATCCTTCGCGAACTGGATGAT 2603 Query 2392 GTATTCCCGGAACACGTAAGCCTGCGTTTTACTGGCCGACAGAAAAATCTGGTTATGGCC 2451 ||||| | ||| |||| ||||||| || |||||||||| |||||||| || | || Sbjct 2602 GTATTGCTTGAAAACGTGGGCCTGCGCCTTGCTGGCCGACAAGAAAATCTGATTGCGCCC 2543 Query 2452 GGTCTTGAGCGCGCGCAGCAGTGCCTCGCGGGAAAAGTAGAACGTCGCGCCAATCTGGCG 2511 || | | ||| | | ||||| || | || || |||| || || |||||||| Sbjct 2542 CGTGGTCAACGCATCAATGAAGGCCTCCCGTGCGAAATACCACGTGGCACCGATCTGGCG 2483 Query 2512 GGATTTGAGAATATCGCGAATACG 2535 | || |||| || ||| ||||| Sbjct 2482 GCTCTTCAGAACATTGCGGATACG 2459 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 95020451150550