Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Solanum_20lycopersicum_20[refseq_20GCF_5F000188115.3_202014-10-16] 3,145 sequences; 823,786,402 total letters Query= NC_029304.1 Length=111246 Score E Sequences producing significant alignments: (Bits) Value seq11 87.8 1e-12 seq10 87.8 1e-12 seq7 84.2 2e-11 >seq11 Length=56302525 Score = 87.8 bits (96), Expect = 1e-12 Identities = 160/230 (70%), Gaps = 6/230 (3%) Strand=Plus/Plus Query 27790 ATGCAAATTTTTGTGAAAACTCTTACTGGGAAATGTATTACAATTGATGTCGAAAGCACC 27849 |||||||||||||| || ||| | |||||||| |||||| | || || || || | Sbjct 497245 ATGCAAATTTTTGTCAAGACTTTGACTGGGAAGACAATTACATTGGAGGTTGAGAGTTCA 497304 Query 27850 GA--CGATGTACAATCGGTCAAACAAAAAATAGCCGACAAAGAAGGTGTTCCGATGGAGC 27907 || | || ||||| || ||| ||| || ||||| || ||| |||| || | Sbjct 497305 GATACCATTGACAAT--GTGAAAGCAAAGATTCAAGACAAGGAGGGTATTCCCCCAGACC 497362 Query 27908 AGCAACGGTTAATTTTTGCCGGAAAACAATTGGACGACGAACGCAG-CTTGTCCGATTAC 27966 | || || || || ||||| || |||||| | || |||| | | |||| | || ||| Sbjct 497363 AACAGCGTTTGATCTTTGCTGGTAAACAACTTGAGGACGGGAGGACTCTTG-CAGACTAC 497421 Query 27967 AACATCCAAAAAGAGAGCACTTTGCATTTGGTTTTGCGTTTGCGTGGCGG 28016 |||||||| || ||| ||| | ||| |||| ||||||||| | || || Sbjct 497422 AACATCCAGAAGGAGTCAACTCTCCATCTGGTGTTGCGTTTGAGAGGAGG 497471 Score = 82.4 bits (90), Expect = 5e-11 Identities = 138/195 (71%), Gaps = 6/195 (3%) Strand=Plus/Plus Query 27790 ATGCAAATTTTTGTGAAAACTCTTACTGGGAAATGTATTACAATTGATGTCGAAAGCACC 27849 |||||||| ||||| |||||||| || || || ||| || |||| ||||| ||| | Sbjct 496561 ATGCAAATCTTTGTTAAAACTCTGACCGGAAAGACTATAACTCTTGAGGTCGAGAGCTCA 496620 Query 27850 GACG--ATGTACAATCGGTCAAACAAAAAATAGCCGACAAAGAAGGTGTTCCGATGGAGC 27907 ||| || | ||| |||||| ||||| ||||| |||||| |||| || | Sbjct 496621 GACACCATCGATAAT--GTCAAAGCTAAAATTCAAGACAAGGAAGGTATTCCCCCAGACC 496678 Query 27908 AGCAACGGTTAATTTTTGCCGGAAAACAATTGGACGACGAACGCAG-CTTGTCCGATTAC 27966 |||| || | || ||||| || ||||| | || || | || | |||| | |||||| Sbjct 496679 AGCAGAGGCTGATCTTTGCTGGGAAACAGCTTGAAGATGGCCGAACACTTG-CTGATTAC 496737 Query 27967 AACATCCAAAAAGAG 27981 ||||||||||| ||| Sbjct 496738 AACATCCAAAAGGAG 496752 >seq10 Length=65527505 Score = 87.8 bits (96), Expect = 1e-12 Identities = 158/229 (69%), Gaps = 4/229 (2%) Strand=Plus/Minus Query 27790 ATGCAAATTTTTGTGAAAACTCTTACTGGGAAATGTATTACAATTGATGTCGAAAGCACC 27849 |||||||| |||||||| || | ||||| || || || |||| || ||||| | Sbjct 1072035 ATGCAAATCTTTGTGAAGACCTTGACTGGCAAGACAATCACCCTTGAGGTGGAAAGTTCT 1071976 Query 27850 GACG--ATGTACAATCGGTCAAACAAAAAATAGCCGACAAAGAAGGTGTTCCGATGGAGC 27907 ||| || ||||| || || ||||| |||||||||||| |||| || | Sbjct 1071975 GACACCATTGACAAT--GTTAAGGCCAAAATTCAGGACAAAGAAGGTATTCCACCAGACC 1071918 Query 27908 AGCAACGGTTAATTTTTGCCGGAAAACAATTGGACGACGAACGCAGCTTGTCCGATTACA 27967 |||| |||| || ||||||||||| ||| | || |||| || | | | | ||||||| Sbjct 1071917 AGCAGAGGTTGATCTTTGCCGGAAAGCAACTTGAGGACGGCCGTACCCTTGCTGATTACA 1071858 Query 27968 ACATCCAAAAAGAGAGCACTTTGCATTTGGTTTTGCGTTTGCGTGGCGG 28016 ||||||| || ||| || | || ||||| ||||| | || || || Sbjct 1071857 ACATCCAGAAGGAGTCAACCCTTCACTTGGTCCTGCGTCTCCGAGGTGG 1071809 >seq7 Length=68045021 Score = 84.2 bits (92), Expect = 2e-11 Identities = 157/229 (69%), Gaps = 4/229 (2%) Strand=Plus/Plus Query 27790 ATGCAAATTTTTGTGAAAACTCTTACTGGGAAATGTATTACAATTGATGTCGAAAGCACC 27849 ||||| || || ||||| ||||| || || || ||||| |||| ||||||||| | Sbjct 66406345 ATGCAGATCTTCGTGAAGACTCTCACGGGTAAGACGATTACCCTTGAGGTCGAAAGCTCA 66406404 Query 27850 GACG--ATGTACAATCGGTCAAACAAAAAATAGCCGACAAAGAAGGTGTTCCGATGGAGC 27907 ||| || |||| ||||| || || || || ||||| |||| || | Sbjct 66406405 GACACCATTGACAAC--GTCAAGGCTAAGATCCAGGATAAGGAAGGCATTCCCCCAGACC 66406462 Query 27908 AGCAACGGTTAATTTTTGCCGGAAAACAATTGGACGACGAACGCAGCTTGTCCGATTACA 27967 |||| |||| || ||||| ||||| || ||||| || | |||| | | | || |||| Sbjct 66406463 AGCAGAGGTTGATCTTTGCAGGAAAGCAGTTGGAAGATGGCCGCACCCTAGCTGACTACA 66406522 Query 27968 ACATCCAAAAAGAGAGCACTTTGCATTTGGTTTTGCGTTTGCGTGGCGG 28016 ||||||| || ||| ||| | |||||||| | ||| | ||||| || Sbjct 66406523 ACATCCAGAAGGAGTCCACCCTCCATTTGGTGCTCCGTCTCCGTGGTGG 66406571 Score = 82.4 bits (90), Expect = 5e-11 Identities = 146/211 (69%), Gaps = 4/211 (2%) Strand=Plus/Plus Query 27790 ATGCAAATTTTTGTGAAAACTCTTACTGGGAAATGTATTACAATTGATGTCGAAAGCACC 27849 |||||||| |||||||| || ||||| |||||| || || | || || || ||| || Sbjct 66407029 ATGCAAATCTTTGTGAAGACCCTTACCGGGAAAACCATCACCCTGGAGGTTGAGAGCTCC 66407088 Query 27850 GACG--ATGTACAATCGGTCAAACAAAAAATAGCCGACAAAGAAGGTGTTCCGATGGAGC 27907 ||| || ||||| ||||| || || ||||| || ||| |||| || | Sbjct 66407089 GACACCATTGACAAT--GTCAAGGCCAAGATCCAAGACAAGGAGGGTATTCCCCCAGACC 66407146 Query 27908 AGCAACGGTTAATTTTTGCCGGAAAACAATTGGACGACGAACGCAGCTTGTCCGATTACA 27967 |||| |||| |||||||| || || || | || || | |||| ||| | || || | Sbjct 66407147 AGCAGAGGTTGATTTTTGCTGGCAAGCAGCTCGAGGATGGCCGCACTTTGGCGGACTATA 66407206 Query 27968 ACATCCAAAAAGAGAGCACTTTGCATTTGGT 27998 |||||||||| ||| || |||| ||||| Sbjct 66407207 ACATCCAAAAGGAGTCGACCCTGCACTTGGT 66407237 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 355848759905415