Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Solanum_20lycopersicum_20[refseq_20GCF_5F000188115.3_202014-10-16] 3,145 sequences; 823,786,402 total letters Query= NC_029996.1 Length=134272 Score E Sequences producing significant alignments: (Bits) Value seq11 104 2e-17 seq1 87.8 2e-12 seq3 82.4 7e-11 >seq11 Length=56302525 Score = 104 bits (114), Expect = 2e-17 Identities = 148/207 (71%), Gaps = 6/207 (3%) Strand=Plus/Minus Query 39082 TGTAGCGTGCTCTCTTTTTGTATATTATAATCGGCAAGTGTTCGTTCGTCATCAAGCTGT 39141 || || ||| ||| ||||| || || ||||| ||||||||||| | || ||||||||| Sbjct 496763 TGAAGGGTGGACTCCTTTTGGATGTTGTAATCAGCAAGTGTTCGGCCATCTTCAAGCTGT 496704 Query 39142 TTGCCCGCAAATATAAGACGCTGCTGGTCGGTGGGCACGCTCTCTTTGTCCATGATTTTC 39201 || || ||||| || || | ||||||||| | ||| | | || ||||| ||||| Sbjct 496703 TTCCCAGCAAAGATCAGCCTCTGCTGGTCTGGGGGAATACCTTCCTTGTCTTGAATTTTA 496644 Query 39202 TGTTTGAGCGTCGCCACCGTATC---GCTCGACTCCACGTCCACCGTGATACTTTTTCCC 39258 ||||| | | | || || ||| ||| || || | || ||| | ||||| Sbjct 496643 GCTTTGACATTATCGATGGTGTCTGAGCT---CTCGACCTCAAGAGTTATAGTCTTTCCG 496587 Query 39259 GTCAGCGTTTTAACAAAGATTTGCATC 39285 ||||| ||||||||||||||||||||| Sbjct 496586 GTCAGAGTTTTAACAAAGATTTGCATC 496560 >seq1 Length=98543444 Score = 87.8 bits (96), Expect = 2e-12 Identities = 147/213 (69%), Gaps = 0/213 (0%) Strand=Plus/Minus Query 39075 CACCAAATGTAGCGTGCTCTCTTTTTGTATATTATAATCGGCAAGTGTTCGTTCGTCATC 39134 ||| | ||| || ||| ||| || || || || || |||||||| || || | || || Sbjct 57604317 CACGAGATGGAGAGTGGACTCCTTCTGGATGTTGTAGTCGGCAAGAGTACGACCATCCTC 57604258 Query 39135 AAGCTGTTTGCCCGCAAATATAAGACGCTGCTGGTCGGTGGGCACGCTCTCTTTGTCCAT 39194 |||||| || || || || || | |||||||||||| | ||| | | || |||||| Sbjct 57604257 AAGCTGCTTTCCGGCGAAAATCAAACGCTGCTGGTCTGGGGGAATCCCTTCCTTGTCCTG 57604198 Query 39195 GATTTTCTGTTTGAGCGTCGCCACCGTATCGCTCGACTCCACGTCCACCGTGATACTTTT 39254 ||| || ||| | | | | || ||| ||||| || || | ||||| | || Sbjct 57604197 GATCTTGGCTTTCACATTGTCGATGGTGTCGGAAGACTCAACCTCTAGGGTGATCGTCTT 57604138 Query 39255 TCCCGTCAGCGTTTTAACAAAGATTTGCATCTT 39287 ||||| || ||||| || ||||| |||||||| Sbjct 57604137 CCCCGTTAGGGTTTTCACGAAGATCTGCATCTT 57604105 >seq3 Length=70787664 Score = 82.4 bits (90), Expect = 7e-11 Identities = 68/82 (83%), Gaps = 1/82 (1%) Strand=Plus/Plus Query 39095 CTTTTTGTATATTATAATCGGCAAGTGTTCGTTCGTCATCAAGCTGTTTGCCCGCAAATA 39154 ||||||| ||||||||||| || ||||| || | || ||||||||||| || ||||| | Sbjct 52499884 CTTTTTGAATATTATAATCCGCCAGTGTACGCCCATCTTCAAGCTGTTTACCAGCAAAGA 52499943 Query 39155 TAAGACGCTGCTGGT-CGGTGG 39175 | || |||||||||| |||||| Sbjct 52499944 TCAGTCGCTGCTGGTCCGGTGG 52499965 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 429529135651385