Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Solanum_20lycopersicum_20[refseq_20GCF_5F000188115.3_202014-10-16]
3,145 sequences; 823,786,402 total letters
Query= NC_029996.1
Length=134272
Score E
Sequences producing significant alignments: (Bits) Value
seq11 104 2e-17
seq1 87.8 2e-12
seq3 82.4 7e-11
>seq11
Length=56302525
Score = 104 bits (114), Expect = 2e-17
Identities = 148/207 (71%), Gaps = 6/207 (3%)
Strand=Plus/Minus
Query 39082 TGTAGCGTGCTCTCTTTTTGTATATTATAATCGGCAAGTGTTCGTTCGTCATCAAGCTGT 39141
|| || ||| ||| ||||| || || ||||| ||||||||||| | || |||||||||
Sbjct 496763 TGAAGGGTGGACTCCTTTTGGATGTTGTAATCAGCAAGTGTTCGGCCATCTTCAAGCTGT 496704
Query 39142 TTGCCCGCAAATATAAGACGCTGCTGGTCGGTGGGCACGCTCTCTTTGTCCATGATTTTC 39201
|| || ||||| || || | ||||||||| | ||| | | || ||||| |||||
Sbjct 496703 TTCCCAGCAAAGATCAGCCTCTGCTGGTCTGGGGGAATACCTTCCTTGTCTTGAATTTTA 496644
Query 39202 TGTTTGAGCGTCGCCACCGTATC---GCTCGACTCCACGTCCACCGTGATACTTTTTCCC 39258
||||| | | | || || ||| ||| || || | || ||| | |||||
Sbjct 496643 GCTTTGACATTATCGATGGTGTCTGAGCT---CTCGACCTCAAGAGTTATAGTCTTTCCG 496587
Query 39259 GTCAGCGTTTTAACAAAGATTTGCATC 39285
||||| |||||||||||||||||||||
Sbjct 496586 GTCAGAGTTTTAACAAAGATTTGCATC 496560
>seq1
Length=98543444
Score = 87.8 bits (96), Expect = 2e-12
Identities = 147/213 (69%), Gaps = 0/213 (0%)
Strand=Plus/Minus
Query 39075 CACCAAATGTAGCGTGCTCTCTTTTTGTATATTATAATCGGCAAGTGTTCGTTCGTCATC 39134
||| | ||| || ||| ||| || || || || || |||||||| || || | || ||
Sbjct 57604317 CACGAGATGGAGAGTGGACTCCTTCTGGATGTTGTAGTCGGCAAGAGTACGACCATCCTC 57604258
Query 39135 AAGCTGTTTGCCCGCAAATATAAGACGCTGCTGGTCGGTGGGCACGCTCTCTTTGTCCAT 39194
|||||| || || || || || | |||||||||||| | ||| | | || ||||||
Sbjct 57604257 AAGCTGCTTTCCGGCGAAAATCAAACGCTGCTGGTCTGGGGGAATCCCTTCCTTGTCCTG 57604198
Query 39195 GATTTTCTGTTTGAGCGTCGCCACCGTATCGCTCGACTCCACGTCCACCGTGATACTTTT 39254
||| || ||| | | | | || ||| ||||| || || | ||||| | ||
Sbjct 57604197 GATCTTGGCTTTCACATTGTCGATGGTGTCGGAAGACTCAACCTCTAGGGTGATCGTCTT 57604138
Query 39255 TCCCGTCAGCGTTTTAACAAAGATTTGCATCTT 39287
||||| || ||||| || ||||| ||||||||
Sbjct 57604137 CCCCGTTAGGGTTTTCACGAAGATCTGCATCTT 57604105
>seq3
Length=70787664
Score = 82.4 bits (90), Expect = 7e-11
Identities = 68/82 (83%), Gaps = 1/82 (1%)
Strand=Plus/Plus
Query 39095 CTTTTTGTATATTATAATCGGCAAGTGTTCGTTCGTCATCAAGCTGTTTGCCCGCAAATA 39154
||||||| ||||||||||| || ||||| || | || ||||||||||| || ||||| |
Sbjct 52499884 CTTTTTGAATATTATAATCCGCCAGTGTACGCCCATCTTCAAGCTGTTTACCAGCAAAGA 52499943
Query 39155 TAAGACGCTGCTGGT-CGGTGG 39175
| || |||||||||| ||||||
Sbjct 52499944 TCAGTCGCTGCTGGTCCGGTGG 52499965
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 429529135651385
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |