Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Solanum_20lycopersicum_20[refseq_20GCF_5F000188115.3_202014-10-16] 3,145 sequences; 823,786,402 total letters Query= NC_029997.1 Length=105667 Score E Sequences producing significant alignments: (Bits) Value seq1 136 3e-27 seq10 116 3e-21 seq11 113 3e-20 seq12 95.1 8e-15 seq7 89.7 3e-13 >seq1 Length=98543444 Score = 136 bits (150), Expect = 3e-27 Identities = 148/194 (76%), Gaps = 2/194 (1%) Strand=Plus/Plus Query 23608 AAAATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCC 23667 ||||||||||| ||||| ||||| || ||||| || |||||||| || |||||||| || Sbjct 87380198 AAAATGCAGATCTTCGTGAAAACTCTTACGGGGAAGACGATCACGCTTGAAGTTGAATCG 87380257 Query 23668 ACGGACACTGTTGA-AATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGA 23726 | |||||| |||| ||| | ||| | || ||| ||||| |||||| | || || || Sbjct 87380258 AGCGACACTATTGACAATGTCAAAGC-TAAGATTCAAGACAAGGAAGGTATTCCACCGGA 87380316 Query 23727 TCAACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTA 23786 || ||||| || || || ||||| || || || ||||| | ||| ||| ||| ||||| Sbjct 87380317 CCAGCAGCGATTGATCTTCGCCGGAAAGCAGCTCGAAGATGGACGTACTCTAGCTGATTA 87380376 Query 23787 CAACATACAAAAAG 23800 |||||| || |||| Sbjct 87380377 CAACATTCAGAAAG 87380390 >seq10 Length=65527505 Score = 116 bits (128), Expect = 3e-21 Identities = 146/198 (74%), Gaps = 2/198 (1%) Strand=Plus/Minus Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670 |||||||| || |||||||||||||| ||||| || ||||| || || || || | | Sbjct 1072719 ATGCAGATATTTGTTAAAACCCTCACTGGAAAGACTATCACCCTTGAGGTGGAAAGCTCA 1072660 Query 23671 GACACTGTTGA-AATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCA 23729 ||||| |||| ||| ||||| | || | | ||||| ||||| | || ||||| || Sbjct 1072659 GACACCATTGACAATGTTAAAGCCAAGA-TCCAGGACAAGGAAGGCATTCCCCCAGACCA 1072601 Query 23730 ACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAA 23789 ||| | | || ||||| || || || || ||||||| || ||| ||| |||||||| Sbjct 1072600 GCAGAGGCTGATCTTTGCAGGAAAGCAGCTTGAAGACGGTCGTACTCTAGCTGATTACAA 1072541 Query 23790 CATACAAAAAGAGTCCAC 23807 ||| || |||||||| || Sbjct 1072540 CATTCAGAAAGAGTCAAC 1072523 Score = 93.3 bits (102), Expect = 3e-14 Identities = 141/198 (71%), Gaps = 2/198 (1%) Strand=Plus/Minus Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670 ||||| || || || || ||| | || || || || ||||| || || || || | Sbjct 1072035 ATGCAAATCTTTGTGAAGACCTTGACTGGCAAGACAATCACCCTTGAGGTGGAAAGTTCT 1071976 Query 23671 GACACTGTTGA-AATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCA 23729 ||||| |||| ||| |||| | |||| || |||||||||||| | || ||||| || Sbjct 1071975 GACACCATTGACAATGTTAAGGCCAAAA-TTCAGGACAAAGAAGGTATTCCACCAGACCA 1071917 Query 23730 ACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAA 23789 ||| | || || |||||||| || ||||| || |||| || || | | |||||||| Sbjct 1071916 GCAGAGGTTGATCTTTGCCGGAAAGCAACTTGAGGACGGCCGTACCCTTGCTGATTACAA 1071857 Query 23790 CATACAAAAAGAGTCCAC 23807 ||| || || ||||| || Sbjct 1071856 CATCCAGAAGGAGTCAAC 1071839 Score = 91.5 bits (100), Expect = 1e-13 Identities = 154/219 (70%), Gaps = 8/219 (4%) Strand=Plus/Minus Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGAC---TCC 23667 ||||| || || |||||||| |||| ||||| || || ||||| || || | ||| Sbjct 65066730 ATGCAAATCTTTGTTAAAACTCTCATTGGAAAGACCATTACTCTGGATGTGAAGAGTTCC 65066671 Query 23668 ACGGACACTGTTGA-AATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGA 23726 | |||| || | ||| ||||| |||| | ||| ||||||||||| | || |||| Sbjct 65066670 A---ACACCATTAACAATGTTAAAGCAAAGA-TTGAAGACAAAGAAGGAATTCCCTCAGA 65066615 Query 23727 TCAACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTA 23786 |||||| | ||| |||||| || |||||| | | || || | || | | ||||| Sbjct 65066614 TCAACAAAGATTAGTATTTGGTGGAAAACAATTTAAGGATGATCATACACTTGCTGATTA 65066555 Query 23787 CAACATACAAAAAGAGTCCACATTACATTTAGTTTTAAG 23825 ||| || ||||| ||||| ||| | ||| | || || || Sbjct 65066554 CAATATTCAAAAGGAGTCTACAATTCATCTTGTCTTGAG 65066516 >seq11 Length=56302525 Score = 113 bits (124), Expect = 3e-20 Identities = 150/206 (73%), Gaps = 2/206 (1%) Strand=Plus/Plus Query 23603 TACTTAAAATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTG 23662 || || | |||||||| || ||||| || ||||| ||||| || |||||||| || |||| Sbjct 496325 TATTTCAGATGCAGATATTTGTTAAGACACTCACCGGAAAGACCATCACTCTTGAGGTTG 496384 Query 23663 ACTCCACGGACACTGTTGA-AATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCG 23721 | | ||||| |||| ||| | ||| | || | || ||||| ||||| | || Sbjct 496385 AGAGTTCTGACACCATTGATAATGTCAAAGCTAAGA-TTCAAGACAAGGAAGGCATTCCT 496443 Query 23722 CCAGATCAACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGC 23781 |||||||| ||| | | || ||||| || ||||| || ||||| | || || | | Sbjct 496444 CCAGATCAGCAGAGACTGATCTTTGCTGGGAAACAGCTTGAAGATGGCCGAACACTTGCT 496503 Query 23782 GATTACAACATACAAAAAGAGTCCAC 23807 ||||||||||| ||||||||||| || Sbjct 496504 GATTACAACATCCAAAAAGAGTCTAC 496529 Score = 102 bits (112), Expect = 6e-17 Identities = 143/198 (72%), Gaps = 2/198 (1%) Strand=Plus/Plus Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670 ||||| || || |||||||| || || ||||| || || ||||| || || || | | Sbjct 496561 ATGCAAATCTTTGTTAAAACTCTGACCGGAAAGACTATAACTCTTGAGGTCGAGAGCTCA 496620 Query 23671 GACACTGTTGA-AATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCA 23729 ||||| | || ||| | ||| | |||| || ||||| |||||| | || ||||| || Sbjct 496621 GACACCATCGATAATGTCAAAGCTAAAA-TTCAAGACAAGGAAGGTATTCCCCCAGACCA 496679 Query 23730 ACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAA 23789 ||| | | || ||||| || ||||| || ||||| | || || | | |||||||| Sbjct 496680 GCAGAGGCTGATCTTTGCTGGGAAACAGCTTGAAGATGGCCGAACACTTGCTGATTACAA 496739 Query 23790 CATACAAAAAGAGTCCAC 23807 ||| ||||| |||||||| Sbjct 496740 CATCCAAAAGGAGTCCAC 496757 Score = 95.1 bits (104), Expect = 8e-15 Identities = 149/211 (71%), Gaps = 2/211 (1%) Strand=Plus/Plus Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670 |||||||| || || || || || || ||||| || ||||| || |||||||| | Sbjct 496789 ATGCAGATCTTTGTCAAGACACTTACTGGAAAGACCATCACCCTTGAAGTTGAAAGTTCC 496848 Query 23671 GACACTGTTGA-AATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCA 23729 || ||| |||| ||| | || | |||| || || || ||||| | || ||||| || Sbjct 496849 GATACTATTGACAATGTGAAGGCCAAAA-TTCAGGATAAGGAAGGGATTCCTCCAGACCA 496907 Query 23730 ACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAA 23789 ||| | | || ||||||||||| ||||| || || | | | || | | || ||||| Sbjct 496908 GCAGAGACTGATCTTTGCCGGCAAGCAACTTGAGGATGGAAGGACCCTGGCTGACTACAA 496967 Query 23790 CATACAAAAAGAGTCCACATTACATTTAGTT 23820 || || |||||||| || |||||| | ||| Sbjct 496968 TATTCAGAAAGAGTCTACCTTACATCTTGTT 496998 Score = 93.3 bits (102), Expect = 3e-14 Identities = 140/198 (71%), Gaps = 1/198 (1%) Strand=Plus/Minus Query 23611 ATGCAGATTTTCGTTAAA-ACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCAC 23669 |||||||| || ||| || || ||||| ||||| || |||||||| || || || | | Sbjct 487727 ATGCAGATATTTGTTTAAGACGCTCACCGGAAAGACCATCACTCTTGAGGTCGAGAGCTC 487668 Query 23670 GGACACTGTTGAAATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCA 23729 |||||| ||| | ||||| || ||| ||||| ||||| | || |||||||| Sbjct 487667 TGACACTAGTGATAATGTAAAAGCTAAGATTCAAGACAAGGAAGGCATTCCTCCAGATCA 487608 Query 23730 ACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAA 23789 ||| | | || ||||| || ||||| || ||||| | | || | | |||||||| Sbjct 487607 GCAGAGGCTGATCTTTGCTGGGAAACAGCTTGAAGATGGCCAAACAGTTGCTGATTACAA 487548 Query 23790 CATACAAAAAGAGTCCAC 23807 ||| ||| | ||||| || Sbjct 487547 CATCCAAGACGAGTCTAC 487530 Score = 93.3 bits (102), Expect = 3e-14 Identities = 159/228 (70%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670 ||||| ||||| || || || | || || || || || || | || ||||| | Sbjct 497245 ATGCAAATTTTTGTCAAGACTTTGACTGGGAAGACAATTACATTGGAGGTTGAGAGTTCA 497304 Query 23671 GACACTGTTGA-AATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCA 23729 || || |||| ||| | ||| |||| | || ||||| || ||| | || ||||| || Sbjct 497305 GATACCATTGACAATGTGAAAGCAAAGA-TTCAAGACAAGGAGGGTATTCCCCCAGACCA 497363 Query 23730 ACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAA 23789 ||||||||| || ||||| || |||||||| || |||| | ||| | | || ||||| Sbjct 497364 ACAGCGTTTGATCTTTGCTGGTAAACAACTTGAGGACGGGAGGACTCTTGCAGACTACAA 497423 Query 23790 CATACAAAAAGAGTCCACATTACATTTAGTTTTAAGGTTGCGAGGAGG 23837 ||| || || ||||| || | ||| | || || | ||| ||||||| Sbjct 497424 CATCCAGAAGGAGTCAACTCTCCATCTGGTGTTGCGTTTGAGAGGAGG 497471 Score = 93.3 bits (102), Expect = 3e-14 Identities = 159/228 (70%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670 |||||||| || || || || | || || || || ||||| | || ||||| | Sbjct 497473 ATGCAGATCTTTGTGAAGACTTTGACTGGGAAGACAATCACATTGGAGGTTGAGAGTTCA 497532 Query 23671 GACACTGTTGA-AATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCA 23729 || || |||| ||| | ||| |||| | || ||||| || ||| | || ||||| || Sbjct 497533 GATACCATTGACAATGTGAAAGCAAAGA-TTCAAGACAAGGAGGGTATTCCCCCAGACCA 497591 Query 23730 ACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAA 23789 ||||||||| || ||||| || |||||||| || || | | ||| | | || ||||| Sbjct 497592 ACAGCGTTTGATCTTTGCTGGTAAACAACTTGAGGATGGGAGGACTCTTGCAGACTACAA 497651 Query 23790 CATACAAAAAGAGTCCACATTACATTTAGTTTTAAGGTTGCGAGGAGG 23837 ||| || || ||||| || | ||| | || || | ||| ||||||| Sbjct 497652 CATCCAGAAGGAGTCAACTCTCCATCTGGTGTTGCGTTTGAGAGGAGG 497699 Score = 91.5 bits (100), Expect = 1e-13 Identities = 131/182 (72%), Gaps = 2/182 (1%) Strand=Plus/Minus Query 23627 AAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACGGACACTGTTGA-AATA 23685 |||| || || ||||| || || ||||| || ||||| | | ||||| |||| ||| Sbjct 487495 AAACTCTGACCGGAAAGACTATAACTCTTGAGGTTGAGAGCTCAGACACCATTGATAATG 487436 Query 23686 TTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCAACAGCGTTTAATATTT 23745 | ||| | |||| ||| ||||| |||||| | | ||||| || ||| | | || ||| Sbjct 487435 TCAAAGCTAAAA-TTGAAGACAAGGAAGGTATTTCCCCAGACCAGCAGAGGCTGATCTTT 487377 Query 23746 GCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAACATACAAAAAGAGTCC 23805 || || ||||| || ||||| | || || | ||||||||||| ||||| |||||| Sbjct 487376 GCTGGGAAACAGCTTGAAGATGGCCGAACACTTACTGATTACAACATCCAAAAGGAGTCC 487317 Query 23806 AC 23807 || Sbjct 487316 AC 487315 Score = 82.4 bits (90), Expect = 5e-11 Identities = 147/211 (70%), Gaps = 3/211 (1%) Strand=Plus/Minus Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670 |||||||| | || || || || || ||||| || ||||| || |||||||| | Sbjct 487283 ATGCAGATCTCTGTCAAGACACTTACTGGAAAGACCATCACCCTTGAAGTTGAAAGTTCA 487224 Query 23671 GACACTGTTGA-AATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCA 23729 || || |||| || | || || |||| || || || ||||| | || ||||| || Sbjct 487223 GATACAATTGACAACGTGAAGACCAAAA-TTCAGGATAAGGAAGGGATTCCTCCAGACCA 487165 Query 23730 ACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAA 23789 ||| | | || ||| ||||||| ||||| || || | | | || | | || ||||| Sbjct 487164 GCAGAGACTGATCTTT-CCGGCAAGCAACTTGAGGATGGAAGGACCCTGGCTGACTACAA 487106 Query 23790 CATACAAAAAGAGTCCACATTACATTTAGTT 23820 || || ||||||||||| |||||| | ||| Sbjct 487105 TATTCAGAAAGAGTCCACCTTACATCTTGTT 487075 >seq12 Length=67145203 Score = 95.1 bits (104), Expect = 8e-15 Identities = 143/201 (71%), Gaps = 2/201 (1%) Strand=Plus/Minus Query 23608 AAAATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCC 23667 ||||||||||| || || || ||||| ||||| || || || || | || || || || Sbjct 66287370 AAAATGCAGATCTTTGTGAAGACCCTGACGGGCAAGACCATTACCTTGGAGGTAGAGTCA 66287311 Query 23668 ACGGACACTGTTGA-AATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGA 23726 | ||||| |||| ||| |||| | || ||| ||||| ||||| | || ||||| Sbjct 66287310 TCAGACACCATTGACAATGTTAAGGC-TAAGATTCAAGACAAGGAAGGCATTCCACCAGA 66287252 Query 23727 TCAACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTA 23786 || ||||| || || || ||||| || || || || || | || || ||| || || Sbjct 66287251 CCAGCAGCGATTGATTTTCGCCGGTAAGCAGCTCGAGGATGGCCGAACGCTAGCTGACTA 66287192 Query 23787 CAACATACAAAAAGAGTCCAC 23807 |||||| || || |||||||| Sbjct 66287191 CAACATCCAGAAGGAGTCCAC 66287171 >seq7 Length=68045021 Score = 89.7 bits (98), Expect = 3e-13 Identities = 140/198 (71%), Gaps = 2/198 (1%) Strand=Plus/Plus Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670 ||||||||||| ||||| |||||||| ||||| || |||||| | || || || | | Sbjct 66406801 ATGCAGATTTTTGTTAAGACCCTCACCGGAAAGACCATCACTTTGGAGGTGGAAAGCTCC 66406860 Query 23671 GACACTGTTGA-AATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCA 23729 ||||| |||| ||| |||| | || || ||||| || || | || |||| || Sbjct 66406861 GACACCATTGATAATGTTAAGGC-TAAGATCCAGGACAAGGAGGGAATTCCTTCAGACCA 66406919 Query 23730 ACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAA 23789 ||| | || || || || || || || || || |||| ||||| | | ||| ||||| Sbjct 66406920 GCAGAGGTTGATTTTCGCTGGTAAGCAGCTCGAGGACGGCCGCACCCTTGCCGACTACAA 66406979 Query 23790 CATACAAAAAGAGTCCAC 23807 ||| || || ||||| || Sbjct 66406980 CATCCAGAAGGAGTCGAC 66406997 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 337996644197660