Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Solanum_20lycopersicum_20[refseq_20GCF_5F000188115.3_202014-10-16] 3,145 sequences; 823,786,402 total letters Query= NC_030940.1 Length=32637 Score E Sequences producing significant alignments: (Bits) Value seq182 491 9e-135 seq1141 150 4e-32 >seq182 Length=7241 Score = 491 bits (544), Expect = 9e-135 Identities = 819/1172 (70%), Gaps = 66/1172 (6%) Strand=Plus/Plus Query 420 TGCGACCAACGGTAGCCTAGGGAAACGTGCGTTGCTGGTAACGGCAGGGTGCGAAGCTTT 479 |||||| | | |||||||||||| || ||||| |||||||||| ||||| |||||| | Sbjct 4406 TGCGACTAGCAGTAGCCTAGGGAGACATGCGTCACTGGTAACGGTGGGGTGTGAAGCTCT 4465 Query 480 CCCGACAACGTAGCCCCCGCGAGGGTGCGAATTCA--CCGTGAGGTGAACC-GCAGAGGG 536 | ||||||| ||||||| |||||||| | || |||||||| | | | ||| Sbjct 4466 TCTGACAACGCTGCCCCCGTAAGGGTGCG--TCCATGCCGTGAGGCGGGGATGTAAAGGC 4523 Query 537 TCGGAGTAGCACCGACC-CAAGGCGCTAGGCTGACTGGTACGGGCAACCTAGGTGAACTG 595 || || |||| | | ||| || ||||| |||||| ||| ||| || ||||||| Sbjct 4524 TCCAAGCAGCAAAGGGGTCGAGGTGCG-GGCTGGCTGGTATGGGTAACGCAG-TGAACTG 4581 Query 596 CTGATAAACACCGTAAGGATTGACGAGCCAAAGCTGCTGACAGGCTCGAACCAAAAGGTA 655 ||||||||| ||||||||||| | |||||||||||||| |||| | |||||||||||| Sbjct 4582 CTGATAAACGTCGTAAGGATTGCGGTGCCAAAGCTGCTGATAGGCACTAACCAAAAGGTA 4641 Query 656 CGTGGTCGGTTATCTCCGTAGGTCGTGGAGATACGTCGCCTTCA-GACCACCGGTGAAAA 714 ||||||||| | | | | | | || ||||||| | ||||||||| | | | Sbjct 4642 CGTGGTCGGATGCCCCGCTCAAAACTCGGGACACGTCGCTAGTATGACCACCGGCGGAGA 4701 Query 715 GGCAGGTCCTAACCCAGTCGTGTGACAGTCAGGGAACGTGGTAAGCCCGTATCGCCGCC- 773 |||||| |||||||||||||||| | ||||||||||||||||||||||| || ||| Sbjct 4702 GGCAGGCCCTAACCCAGTCGTGTAATGCGCAGGGAACGTGGTAAGCCCGTATGGCTGCCG 4761 Query 774 -------------CTCGGGGCAGGGGAGCCGTAAGGCGAACTGTTGGCGGTGCGGGTATG 820 ||| || |||| || |||||||| |||||||| ||||||||||| Sbjct 4762 GAGTGCAGTTTGACTCAGG-CAGGCGAACCGTAAGGAACGCTGTTGGCTGTGCGGGTATG 4820 Query 821 GGATCGCAGAGAAAGCGAACGCCAGGCTGTAATCGTCTGGATAGGGGTTGGAACATCACC 880 ||| ||||||||||||||||||||||||| ||| |||||||||||| ||||||| | Sbjct 4821 GGAGGTTGGAGAAAGCGAACGCCAGGCTGTAATGGTCCGGATAGGGGTTGAAACATCATC 4880 Query 881 CCACGGGAAACCGGGCAGACTTCTGCGTGGTCTTTCGTCGCAAGAACTCTGATTGAACCT 940 ||||| |||| || ||||||||| ||||||||||||||||| |||| |||| Sbjct 4881 CCACGCGAAAGCGAGCAGACTTCCAACTGGTCTTTCGTCGCAAGGCGGCTGACTGAA--- 4937 Query 941 GTCTCAATGAACCCAGGGCTCAGCAACATCGAGCCCACACAAACCAACCTTGGCGGGGTG 1000 ||| | | | | | || |||||| |||||| Sbjct 4938 --CTCGCTT-------GTTTAATTTTCTTC-----------------CCTTGG-GGGGTG 4970 Query 1001 CGCGCATCCCGTCAGGGACCGGCGTGCGCCTTCCGCTCGGGTGGACTAACCATCATGAGA 1060 ||| || || || ||| || || ||| | ||| | | ||| || | Sbjct 4971 A---CATGCCCCCAAGGG--GGCATGTTGTCTCTGCT-GTTTGGGGAAGTCCTCAAGATA 5024 Query 1061 GGAAAGCAGCATGAAAGAACTCAGCCCATCGGCCGGGTCTGCGCTTTCCGGCGCTCCGCA 1120 ||| ||||||||| ||| | | | || | || | ||||||| |||||| ||||| Sbjct 5025 GGAGAGCAGCATGGAAGCATTGATCCGAGAGGATGAATCTGCGCCCTCCGGCATCCCGCA 5084 Query 1121 GCAGTGGCACGACATCGACTGGTGTCGGGTCCAGCGGAATGTCCGGGGAATGCAGGTACG 1180 | ||| ||||||| | ||| | || ||| | |||||||| |||| ||||||| | || Sbjct 5085 ACGATGGGGCGACATCAATTGGCGCCGCGTCGATCGGAATGTTCGGGCAATGCAGATTCG 5144 Query 1181 GATTGCGAAGGCTTGTCGGGAAGGCAAATGGCGCAGGGTGAAGGCCCTACAACGGATGCT 1240 ||||||||||| | |||| | | |||||||||||||| ||| | ||||| || Sbjct 5145 AATTGCGAAGGCAACACAGGAAAGGGACTGGCGCAGGGTGAAAGCCTTGCAACGATCCCT 5204 Query 1241 GACCCGCTCGACGTCGGCC-AGGTACCTGGCTGTACGGAGAGTCACTGAAAACCAGGGCA 1299 |||||||||| || ||| | | | | ||| ||| || |||| | ||||| || Sbjct 5205 GACCCGCTCGTTTTCCGCCAAAGCATC-GGCGGTAAGGCGAGTGGCGATGAACCAAGGTG 5263 Query 1300 AGCGCACGGCGGGAGTCGACCGCGTGCTCTGGGATACGCCTGACACCAAGTGGAAAGCGG 1359 ||| ||||| ||||||||||||| ||| | ||||||| | ||| |||| Sbjct 5264 CGCGGACGGCAGGAGTCGACCGCGAAAAGTGGAAATCGCCTGAGGTCCGATGGGAAGC-- 5321 Query 1360 CACAAG--GGTTGAAAAGGCGCGGGTACCAACCTCGGCCTCTACGGCGAGTGTTCATCCC 1417 || | ||||||| | || ||||| | || ||| ||||||| || || ||||| Sbjct 5322 CATTGGGCGGTTGAAGCGCCGGGGGTATCGGCCCATGCCATTACGGCGGGTCTTTATCCC 5381 Query 1418 GAAGTCGAACGGAAAGGAGCGCCCCCTGGGTATCCCGACCATGACTGACAGGGCAATGCA 1477 || | ||||| ||||| ||||| |||||||| ||||||||| ||||| || ||||| Sbjct 5382 CAAAGCCAACGGGAAGGAACGCCCTCTGGGTATTCCGACCATGTTGGACAGAGCCATGCA 5441 Query 1478 GGCACTCTACCTGCTCGCTCTGTCGCCCATTGCAGAAACCACCGGCGATCCGAACAGCTA 1537 ||| | || ||||| || ||| || | | ||| || ||||||||||| ||| Sbjct 5442 GGCGTTGTATCTGCTGGCGCTGGAACCAGTGTCCGAAGGGACGAGCGATCCGAACTCCTA 5501 Query 1538 TGGCTTCAGGATCGAGCGATCCACGGCGGATG 1569 ||| ||| ||||| | |||||||||||||||| Sbjct 5502 TGGGTTCCGGATCAATCGATCCACGGCGGATG 5533 Score = 387 bits (428), Expect = 3e-103 Identities = 689/986 (70%), Gaps = 36/986 (4%) Strand=Plus/Plus Query 1681 ATGTCCCCACGGACAAGGTGATCCTCCGGAAATGGTTGAAGGCCGGCGTGATCCACAAAG 1740 ||||||| | |||||| | ||||| ||||| ||| |||| || |||||| | ||| Sbjct 6086 ATGTCCCTATGGACAAAGCAATCCTGCGGAAGTGGCTGAAAGCTGGCGTGGTATTTCAAG 6145 Query 1741 GCCAGCTCCAGGCAACGGATGCTGGAACACCTCAAGGCGGAATCATCTCGCCTACTTTGG 1800 ||||| | ||||| || || ||||||||||| || || || ||||| || || || |||| Sbjct 6146 GCCAGTTTCAGGCGACCGACGCTGGAACACCACAGGGGGGCATCATTTCCCCGACCTTGG 6205 Query 1801 CAAACATGGTGCTCGATGGCCTGGAATCACAGCT---CAAG------CG---ACACCTGG 1848 | ||| ||| || |||| ||||| ||| || | || || | | |||| Sbjct 6206 CTAACGTGGCACTGAATGGGTTGGAACAACAACTGGTCGAGTCCCTACGGGCAAAGCTGG 6265 Query 1849 GCGTGACAAGGGCGAAGAAGCTGAAACTCAATGTGGTGCGCTATGCGGACGACTTCGTCA 1908 | || || | | |||||| ||||| | ||||| || || |||||||| |||||||| | Sbjct 6266 GAGTAACCAACACTAAGAAGTTGAAAGTGAATGTCGTACGATATGCGGATGACTTCGTGA 6325 Query 1909 TCACCGGTGTCTCTCCCGAGGTACTGGAGAAAGAAGTCAAACCCTGGGTAGAGCAGTTCC 1968 ||||||| | | || || || || || || ||||| || || ||||| || ||||||| Sbjct 6326 TCACCGGCTACACGCCGGAAGTTCTAGAAAACGAAGTGAAGCCGTGGGTGGAACAGTTCC 6385 Query 1969 TGGCGGTACGCGGGCTGCAGCTCTCTCTGGAGAAAACGCGGATCGCCCACATAGATCAGG 2028 | || | | ||||| ||| || |||||||||||| |||| | |||| | | | | Sbjct 6386 TAGCAACAAGGGGGCTTTCGCTGTCCACGGAGAAAACGCGAATCGTCAACATCGCTGAAG 6445 Query 2029 GCTTCGACTTCCTCGGTTGGAACTTCCGCAAGTACAACGGGAA-GCTTCTGATCAAACCC 2087 |||| |||||||| || ||||| ||||| |||||| |||||| || || |||||||| Sbjct 6446 GCTTTGACTTCCTTGGGTGGAATTTCCGGAAGTAC-TCGGGAACCCTGCTCATCAAACCG 6504 Query 2088 AGCCAGAAGAACGCGAAAGCGTTCTACGGCAAGGTGAAGGAGGTCATCGAAAC---CAGC 2144 ||| |||||||||| || |||| || |||||||||||||||||||| || |||| Sbjct 6505 AGCAAGAAGAACGCACAAACGTTTTATTGCAAGGTGAAGGAGGTCATCAGTACTCACAGC 6564 Query 2145 AGGACGGCAAGGCAAGAGGACTTGATCCGAACGCTGAATCCGATTCTGCGCGGCTGGGCG 2204 || || || ||| | |||| || ||| ||||||||| ||||| || | ||||||||| Sbjct 6565 -GGGCG--AAAGCAGGCGGACCTGGTCCAAACGCTGAACCCGATGCTTAGGGGCTGGGCG 6621 Query 2205 CTGTATCACCAGCCAGTGGTTGCCAAGCAAACGTTCAGCCGCATGGA-CAACAGAGTGTT 2263 | ||||||| ||||||||||| ||| ||||||| | | ||||| || | || || Sbjct 6622 CAGTATCACAGCCCAGTGGTTGCGAAGGCGACGTTCACCAGAATGGAGCACCTGA---TT 6678 Query 2264 TCTCAAGCTC--TGGCGTTGGGCGAAACGGCGGCACCCGAACAAGTCACTGGATTGGATC 2321 | | |||| ||||| ||||| |||||||| || | | ||| | | || ||| | Sbjct 6679 TTTAGGGCTCTGTGGCGGTGGGCAAAACGGCGACATCGAAGAAAGAAAGTTGACTGGGTG 6738 Query 2322 AGGAGGCGATATTTCCGGATTCA-CGGGGACAAGACTTGGGTGTTCGCTACCACGGTGCT 2380 | | | |||||| || || | || || || ||||||||||| | |||||| | Sbjct 6739 CGAAAGAAATATTT-CGCATCAATCGATGATCGGAATTGGGTGTTCGGTTCCACGGAAGT 6797 Query 2381 G--GAAAGCAACGGTAAGAAACGGGAGGTCGCGCTGTACTCGCTGGCGAGCACGCCGATT 2438 | || || | | | || ||| | ||||| ||| | |||| ||||| || Sbjct 6798 GAACAAGGCTGGCGAACGCTACTGGA--AAGGACTGTATTCGATCCCGAGTACGCCAATC 6855 Query 2439 GAGCGACATAGGAAGGTGAGTGGGGAATACAACCCCTACGATCCAGC-CATGGAAGCAAT 2497 | | || | ||||||| | ||||| |||||||| | ||| ||||| || | || || Sbjct 6856 CGGAGGCACAAGAAGGTGCGGGGGGACTACAACCCTTTCGACCCAGCGCAGGAAATGTAT 6915 Query 2498 AGGTGAAAAACTGCGAACGGAACGGATGTTGAAAAAGC-TGAAGTACCGAACTCAGATCA 2556 || |||| |||||| |||||| ||| | ||||| || |||||| | ||| Sbjct 6916 -GGCGAAACGCTGCGACAGGAACGCATG-GCAGAAAGCATGGCGTACCGGAAGCAGTGGG 6973 Query 2557 GAAACCTATACCTCTCCCAGAAGGGGCTCTGCTCGCTCTGCAACCAACCGATAACCAGGG 2616 ||| || | | | |||||| || | ||| || | || || |||||| || | Sbjct 6974 CAAAGCTGTTCATGTCCCAGCGAGGCTTGTGCGCGGTGTGTCACAGCGCGATAAGCAAAG 7033 Query 2617 AAACCGGGTGGCACGACCACCACATC 2642 | ||||||||||| ||||| |||||| Sbjct 7034 AGACCGGGTGGCATGACCATCACATC 7059 >seq1141 Length=3271 Score = 150 bits (166), Expect = 4e-32 Identities = 277/400 (69%), Gaps = 17/400 (4%) Strand=Plus/Minus Query 12529 TCGATGAACTTGCACATGAACAGCTGTTCGAAGCGCTCTTCGTCGTACTCCAGCTGCAGG 12588 |||||||| |||||| | ||| | |||||| | | ||| |||||||||| ||| Sbjct 3096 TCGATGAAGCCGCACATCAGCAGGTTCTCGAAGTCCGCATCGCTGTACTCCAGCCGCAAC 3037 Query 12589 CGCTCCAGGTCGAACAGGTTGCAGCCGCCGGCGATGGCGTCTTGAATCGTGATGACCTTG 12648 | || |||||||||||||||||||| |||||||||||||||| | ||||| | || Sbjct 3036 TGGTCGAGGTCGAACAGGTTGCAGCCACCGGCGATGGCGTCTTCCACCGTGACAATCTGT 2977 Query 12649 CGCCACTGCCCGTCCGGGCACAACGCGCCGGCGTGGATCTGCGCTTCGCTG--GGCCACG 12706 |||||| ||||||| |||| | |||| | || | | ||| | |||| | | ||| Sbjct 2976 TTCCACTGACCGTCCGCGCACCGCCGGCCGTCCTGCAAGTTCGCGTGGCTGACGTCAACG 2917 Query 12707 -------GCCCGGCCTTCTTTCCGCGCTTGCTGTTGCGGAACTCCTCGCCGGTCCAGTAC 12759 | | ||||| |||||| | || || |||| | |||| | |||| || Sbjct 2916 CGGATGTGGTCTTCCTTC-TTCCGCCC--GCGATT---GAACAGCGCGCCAGACCAGAAC 2863 Query 12760 GGATATGCCTGGTGCGTTA-CCGCGCTGGGCGTGGAGAAGTAGGTCAGGCGCCACTTTGC 12818 || || || | ||| | | | || ||||| ||||| || ||| | |||||||| | Sbjct 2862 GGGTACGCTTCGTGGGCAAGGCTCG-AAGGCGTCGAGAAATAAGTCTGCCGCCACTTCGA 2804 Query 12819 ATGCGAGGCCATCGCGCTGGCCACCGTCTGCAGCTTCTGGAAATTGGGGATCCAGAACAC 12878 || ||||||| || ||||||| | |||||| ||||| |||||||||| Sbjct 2803 GTGGATGGCCATCCCGGAGGCCACCTTGCGCAGCTCTTGGAAGCGCTGGATCCAGAAGTA 2744 Query 12879 TTCGTCGATGTAGACGTGGCCGTGGTAGCTCTGCGCCGTG 12918 ||||| | |||| || |||||| ||||||||||| ||| Sbjct 2743 CTCGTCCAGATAGAGGTTGCCGTGATAGCTCTGCGCGGTG 2704 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 104312904093510