Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Solanum_20lycopersicum_20[refseq_20GCF_5F000188115.3_202014-10-16] 3,145 sequences; 823,786,402 total letters Query= NC_031033.1 Length=217124 Score E Sequences producing significant alignments: (Bits) Value seq4 105 9e-18 >seq4 Length=66470942 Score = 105 bits (116), Expect = 9e-18 Identities = 160/228 (70%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 78398 AGTTCCTGCATTAAATAATGTCGGAGATGCATGCGTAAACCATTTTTCAGAAAGTAGATT 78457 ||| || |||||||||| ||| ||||||||||| || ||||| || ||| | | || Sbjct 50409318 AGTGCCAGCATTAAATAGTGTTGGAGATGCATGAGTGAACCAGCGTTGAGACATCAAATG 50409259 Query 78458 GTATGTTTCAATAGCTGATTCTATGTCCCATTGATGAATTCCTACCGCTACACGCATCAA 78517 ||||| | || | ||||| || ||| || || ||||| || | ||| | ||||| Sbjct 50409258 ATATGTCTTGATGACAGATTCAATATCCTCTTTGTGGATTCCAACAGATACTCTCATCAG 50409199 Query 78518 CATATGCTGAGGTCTTTCAACCGTCTTATTATTTATTTTCAACAAGTATGATTTTTCCAA 78577 |||||| || || ||||| || |||| | || || || | ||| || |||| | Sbjct 50409198 CATATGTTGTGGCCTTTCCACAATCTTTCCCTGAATCTTTAAAAGGTAAGACCTTTCAAG 50409139 Query 78578 AGTTTTAAAACCAAAATAGTTGTATGAAAAGTCTCTCTCGTAAATAAT 78625 ||||| |||||||| || | || ||||||||| ||||| || || Sbjct 50409138 GGTTTTGAAACCAAAGTAATCATAGTCAAAGTCTCTGTCGTATATGAT 50409091 Score = 95.1 bits (104), Expect = 2e-14 Identities = 157/224 (70%), Gaps = 2/224 (1%) Strand=Plus/Plus Query 78158 ACCTCCCTGATCTATATATCTGGCGGTGTTATTATAAACTCTCAACATTGGAATAATACC 78217 |||||| || || | ||||| || |||| |||| | || | | ||| |||||||| || Sbjct 4387790 ACCTCCTTGGTCAACATATCGAGCAGTGTCATTAAACACACGTAGCATCGGAATAATTCC 4387849 Query 78218 GTTAGATGTTCCATTTGTTCCAGAAATATAACTTCCACTTGCGCGAATATTACTAATGGA 78277 || ||||| |||||||||||| ||||||||| ||| | | |||||||| | || Sbjct 4387850 ATTTGATGTCCCATTTGTTCCACGAATATAACTCCCAGTGCCACGAATATTGTGCACAGA 4387909 Query 78278 TATCCCTATTCCTCCTGCCATCTTAGAT-ATTAGAGCGCAACGTTTCAATGTATCGTAGA 78336 || || |||||||| | || || | | || | ||| || || | || || || | Sbjct 4387910 TACTCCAATTCCTCCAG-CAGATTTGCTAATAACAGCACACTCCTTAAGAGTGTCATATA 4387968 Query 78337 TACCCTCTATACTGTCATCCATCATGTTAAGAAGAAAACAGCTA 78380 | ||||| ||||| ||||| ||||| | || || |||||| Sbjct 4387969 TGCCCTCAATACTATCATCTTTCATGCATATCAGGAAGCAGCTA 4388012 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 694641490832800