Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Solanum_20lycopersicum_20[refseq_20GCF_5F000188115.3_202014-10-16]
3,145 sequences; 823,786,402 total letters
Query= NC_032111.1
Length=163005
Score E
Sequences producing significant alignments: (Bits) Value
seq2 172 6e-38
>seq2
Length=55340444
Score = 172 bits (190), Expect = 6e-38
Identities = 397/597 (66%), Gaps = 11/597 (2%)
Strand=Plus/Minus
Query 23506 AAACATGCAAAATCACAATGTAGGCCTTCATCCCTACTAATCAATTCATTAGAAAATGTT 23565
||||| ||||||||||| || | ||||| || || ||| || ||||| || || |||
Sbjct 54781790 AAACACGCAAAATCACAGTGCAAACCTTCGTCTCTTGAAATTAACTCATTTGAGAAGGTT 54781731
Query 23566 AATCCTGGCATTAATCCTCGTTTTTTAATCCAAAATATTGCAGCAAATGATCCGGAAAAG 23625
||||| |||||||| || |||||||| | ||||||||| | | || |||| |||
Sbjct 54781730 AATCCAGGCATTAACCCCCGTTTTTTCAACCAAAATATCGAACAGAAGCTTCCGCTGAAG 54781671
Query 23626 AAAATACCCTCAACAGCCGCAAAGGCCACAAGACGTGTACCAAATGTTGCATTATAATCA 23685
||||| || |||||| ||||| ||||| | ||| | || ||| | | ||
Sbjct 54781670 AAAATCCCTTCAACACAAGCAAAAGCCACCAAACGCTCCGCGAAAGTT---TCGGACCCA 54781614
Query 23686 GAAATCCAtttttttGTCCAATTAGCCTTCAATTTTACACACTCAATTGTTTCAATTGCT 23745
||||| | ||| || |||||| || ||||| ||||| ||||||||
Sbjct 54781613 TCGATCCAACGAAGGGCCCATTTCGCCTTCTTTTCAACACAAGGGATTGTCTCAATTGC- 54781555
Query 23746 TTTAAGAGAAAAGTT----TTTTCTTCATTATCTGTTATATATGTATCAATTAGTAAACT 23801
| | | || || ||||| ||| ||| | || || | || | || |||||
Sbjct 54781554 ---ACGGAACAATTTGCTCTTTTCGTCAGAATCCTTGATGTACGACTCCAACAGCAAACT 54781498
Query 23802 ATACATTTCAGAATGAATATTTTCAATAGCAATCTGAAACCCATAAAAACATCTAGCTTC 23861
||||| || ||||| ||||| ||||| || || || |||||||| ||| | ||| ||
Sbjct 54781497 GTACATCTCGGAATGGATATTCTCAATGGCGATTTGGAACCCATAGAAAGCACGAGCCTC 54781438
Query 23862 AGACAATTGAACATCATTAAAAAATCTTTTAGCTAAATTTTCGTTAACAATACCATCACT 23921
| | || ||||| || | || ||| ||| | || || ||| || || ||
Sbjct 54781437 GGCAACCTGGACATCTTTCATGAACCTTCCAGCGAGGTTCTCTAAAACGATGCCGTCTGA 54781378
Query 23922 AGCAGCAAAGAAAGCAAGAACATATTTTATAAAATGTCTTTCATCAGTTGATAATTTTTT 23981
|| ||||| || |||||||||| | || ||||| |||||| | | || || ||||
Sbjct 54781377 GGCGGCAAAAAAGGCAAGAACATGAGTGATGAAATGCCTTTCACCGGATGTTAGGTTTTC 54781318
Query 23982 CCAATCATTAATATCTTTTGATAAATCAACTTCATCAACTGTCCAAAAACTTGCCAAGGC 24041
||| | | | |||| | || | ||| ||||| || | ||||| ||| ||||| |||
Sbjct 54781317 CCAGTGACGAGTATCGGTGGAGAGATCGACTTCTTCTGCCGTCCAGAAAGATGCCATGGC 54781258
Query 24042 ACGCTTATACATTAGCCAAATATCATTATGTTGTATTGGAAATATTACGAATCTATC 24098
||| |||||| |||||| | || || ||||| || || ||||| |||
Sbjct 54781257 TTTCTTGTACATTTCCCAAATCTGTGGATACTGAATTGGGAACATACAGAATCGATC 54781201
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 521467499003000
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |