Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Solanum_20lycopersicum_20[refseq_20GCF_5F000188115.3_202014-10-16] 3,145 sequences; 823,786,402 total letters Query= NC_032111.1 Length=163005 Score E Sequences producing significant alignments: (Bits) Value seq2 172 6e-38 >seq2 Length=55340444 Score = 172 bits (190), Expect = 6e-38 Identities = 397/597 (66%), Gaps = 11/597 (2%) Strand=Plus/Minus Query 23506 AAACATGCAAAATCACAATGTAGGCCTTCATCCCTACTAATCAATTCATTAGAAAATGTT 23565 ||||| ||||||||||| || | ||||| || || ||| || ||||| || || ||| Sbjct 54781790 AAACACGCAAAATCACAGTGCAAACCTTCGTCTCTTGAAATTAACTCATTTGAGAAGGTT 54781731 Query 23566 AATCCTGGCATTAATCCTCGTTTTTTAATCCAAAATATTGCAGCAAATGATCCGGAAAAG 23625 ||||| |||||||| || |||||||| | ||||||||| | | || |||| ||| Sbjct 54781730 AATCCAGGCATTAACCCCCGTTTTTTCAACCAAAATATCGAACAGAAGCTTCCGCTGAAG 54781671 Query 23626 AAAATACCCTCAACAGCCGCAAAGGCCACAAGACGTGTACCAAATGTTGCATTATAATCA 23685 ||||| || |||||| ||||| ||||| | ||| | || ||| | | || Sbjct 54781670 AAAATCCCTTCAACACAAGCAAAAGCCACCAAACGCTCCGCGAAAGTT---TCGGACCCA 54781614 Query 23686 GAAATCCAtttttttGTCCAATTAGCCTTCAATTTTACACACTCAATTGTTTCAATTGCT 23745 ||||| | ||| || |||||| || ||||| ||||| |||||||| Sbjct 54781613 TCGATCCAACGAAGGGCCCATTTCGCCTTCTTTTCAACACAAGGGATTGTCTCAATTGC- 54781555 Query 23746 TTTAAGAGAAAAGTT----TTTTCTTCATTATCTGTTATATATGTATCAATTAGTAAACT 23801 | | | || || ||||| ||| ||| | || || | || | || ||||| Sbjct 54781554 ---ACGGAACAATTTGCTCTTTTCGTCAGAATCCTTGATGTACGACTCCAACAGCAAACT 54781498 Query 23802 ATACATTTCAGAATGAATATTTTCAATAGCAATCTGAAACCCATAAAAACATCTAGCTTC 23861 ||||| || ||||| ||||| ||||| || || || |||||||| ||| | ||| || Sbjct 54781497 GTACATCTCGGAATGGATATTCTCAATGGCGATTTGGAACCCATAGAAAGCACGAGCCTC 54781438 Query 23862 AGACAATTGAACATCATTAAAAAATCTTTTAGCTAAATTTTCGTTAACAATACCATCACT 23921 | | || ||||| || | || ||| ||| | || || ||| || || || Sbjct 54781437 GGCAACCTGGACATCTTTCATGAACCTTCCAGCGAGGTTCTCTAAAACGATGCCGTCTGA 54781378 Query 23922 AGCAGCAAAGAAAGCAAGAACATATTTTATAAAATGTCTTTCATCAGTTGATAATTTTTT 23981 || ||||| || |||||||||| | || ||||| |||||| | | || || |||| Sbjct 54781377 GGCGGCAAAAAAGGCAAGAACATGAGTGATGAAATGCCTTTCACCGGATGTTAGGTTTTC 54781318 Query 23982 CCAATCATTAATATCTTTTGATAAATCAACTTCATCAACTGTCCAAAAACTTGCCAAGGC 24041 ||| | | | |||| | || | ||| ||||| || | ||||| ||| ||||| ||| Sbjct 54781317 CCAGTGACGAGTATCGGTGGAGAGATCGACTTCTTCTGCCGTCCAGAAAGATGCCATGGC 54781258 Query 24042 ACGCTTATACATTAGCCAAATATCATTATGTTGTATTGGAAATATTACGAATCTATC 24098 ||| |||||| |||||| | || || ||||| || || ||||| ||| Sbjct 54781257 TTTCTTGTACATTTCCCAAATCTGTGGATACTGAATTGGGAACATACAGAATCGATC 54781201 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 521467499003000