Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Solanum_20lycopersicum_20[refseq_20GCF_5F000188115.3_202014-10-16] 3,145 sequences; 823,786,402 total letters Query= NC_033780.1 Length=144510 Score E Sequences producing significant alignments: (Bits) Value seq12 122 8e-23 seq1 118 1e-21 seq7 116 3e-21 seq11 105 6e-18 seq10 93.3 4e-14 >seq12 Length=67145203 Score = 122 bits (134), Expect = 8e-23 Identities = 167/231 (72%), Gaps = 2/231 (1%) Strand=Plus/Plus Query 41636 CCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAG 41695 || || || ||||| | || || || || ||| ||||||||| ||||| ||||| | Sbjct 66287141 CCACCACGGAGACGGAGGACAAGGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCAGCT 66287200 Query 41696 AGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGA 41755 || || || | || ||||||||||| |||||||| |||| ||||| ||||| | ||| Sbjct 66287201 AGCGTTCGGCCATCCTCGAGCTGCTTACCGGCGAAAATCAATCGCTGCTGGTCTGGTGGA 66287260 Query 41756 ACGCTCTCCTTGTCCATGATTTTTTGCTTCAACGACGAC-ACAGTGTCGCTCGACTCCAC 41814 | || ||||||| | ||| | || || | ||| | | | ||||| ||||| || Sbjct 66287261 ATGCCTTCCTTGT-CTTGAATCTTAGCCTTAACATTGTCAATGGTGTCTGATGACTCTAC 66287319 Query 41815 CTCCACCGTTATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCATGTT 41865 ||||| || || || || |||||||| ||||| || || |||||||| || Sbjct 66287320 CTCCAAGGTAATGGTCTTGCCCGTCAGGGTCTTCACAAAGATCTGCATTTT 66287370 >seq1 Length=98543444 Score = 118 bits (130), Expect = 1e-21 Identities = 143/192 (74%), Gaps = 2/192 (1%) Strand=Plus/Minus Query 41675 TTCTGAATGTTATAGTCGGAGAGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATC 41734 ||||||||||| || || | || || || | || ||||||||||| |||||||| ||| Sbjct 87380388 TTCTGAATGTTGTAATCAGCTAGAGTACGTCCATCTTCGAGCTGCTTTCCGGCGAAGATC 87380329 Query 41735 AGGCGCTGTTGGTCCGCGGGAACGCTCTCCTTGTCCATGATTTTTTGCTTCAACGACGAC 41794 | ||||| ||||||| |||| | ||||||| | ||| | || |||| || | | Sbjct 87380328 AATCGCTGCTGGTCCGGTGGAATACCTTCCTTGT-CTTGAATCTTAGCTTTGACATTGTC 87380270 Query 41795 -ACAGTGTCGCTCGACTCCACCTCCACCGTTATCGTTTTACCCGTCAGCGTCTTTACGAA 41853 | |||||||||||| || || || | ||| ||||| || ||||| || || || ||||| Sbjct 87380269 AATAGTGTCGCTCGATTCAACTTCAAGCGTGATCGTCTTCCCCGTAAGAGTTTTCACGAA 87380210 Query 41854 AATCTGCATGTT 41865 |||||||| || Sbjct 87380209 GATCTGCATTTT 87380198 >seq7 Length=68045021 Score = 116 bits (128), Expect = 3e-21 Identities = 164/228 (72%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 41636 CCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAG 41695 || || |||||||| | || || || || || ||||||||| ||||| ||||||| Sbjct 66407027 CCACCACGTAGACGGAGGACAAGGTGAAGGGTCGACTCCTTCTGGATGTTGTAGTCGGCA 66406968 Query 41696 AGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGA 41755 |||||||| |||| ||||||||||| || ||||| |||| | ||| ||||| | ||| Sbjct 66406967 AGGGTGCGGCCGTCCTCGAGCTGCTTACCAGCGAAAATCAACCTCTGCTGGTCTGAAGGA 66406908 Query 41756 ACGCTCTCCTTGTCCATGATTTTTTGCTTCA-ACGACGACACAGTGTCGCTCGACTCCAC 41814 | | |||||||||| ||| || ||| | | | | | |||||| ||||| Sbjct 66406907 ATTCCCTCCTTGTCCTGGATCTTAGCCTTAACATTATCA-ATGGTGTCGGAGCTTTCCAC 66406849 Query 41815 CTCCACCGTTATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCAT 41862 ||||| || || || || || || || ||||| || ||||||||||| Sbjct 66406848 CTCCAAAGTGATGGTCTTTCCGGTGAGGGTCTTAACAAAAATCTGCAT 66406801 Score = 107 bits (118), Expect = 2e-18 Identities = 162/228 (71%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 41636 CCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAG 41695 || || || ||||| | || ||||| || || ||||||||| ||||| ||||| | Sbjct 66406799 CCACCACGGAGACGGAGGACAAGATGGAGGGTAGACTCCTTCTGGATGTTGTAGTCAGCC 66406740 Query 41696 AGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGA 41755 |||||||| | || ||||||||||| || ||||| |||| | ||| ||||| | ||| Sbjct 66406739 AGGGTGCGACCATCCTCGAGCTGCTTTCCAGCGAAGATCAACCTCTGCTGGTCTGGGGGG 66406680 Query 41756 ACGCTCTCCTTGTCCATGATTTTTTGCTTCAACGACGAC-ACAGTGTCGCTCGACTCCAC 41814 | | ||||| ||| ||| || |||| ||| | | | |||||| ||||| Sbjct 66406679 ATCCCTTCCTTATCCTGGATCTTAGCCTTC-ACGTTGTCAATGGTGTCGGAGCTTTCCAC 66406621 Query 41815 CTCCACCGTTATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCAT 41862 ||||| || || || || || || || ||||| ||||| |||||||| Sbjct 66406620 CTCCAAAGTGATGGTCTTTCCGGTAAGAGTCTTAACGAAGATCTGCAT 66406573 Score = 102 bits (112), Expect = 8e-17 Identities = 161/228 (71%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 41636 CCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAG 41695 || || || ||||| | || || ||||| ||| ||||||||| || || ||||| | Sbjct 66407483 CCACCACGGAGACGGAGGACAAGGTGCAGGGTGGACTCCTTCTGGATATTGTAGTCAGCA 66407424 Query 41696 AGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGA 41755 |||||||| | || || |||||||| || ||||| |||| | ||| ||||| | || Sbjct 66407423 AGGGTGCGGCCATCCTCAAGCTGCTTACCAGCGAAAATCAACCTCTGCTGGTCTGGTGGG 66407364 Query 41756 ACGCTCTCCTTGTCCATGATTTTTTGCTTCAACGACGAC-ACAGTGTCGCTCGACTCCAC 41814 | | |||||||||| ||| | || |||| || | | | ||||| |||||| Sbjct 66407363 ATCCCCTCCTTGTCC-TGAATCTTAGCTTTCACATTGTCGATGGTGTCAGAACTCTCCAC 66407305 Query 41815 CTCCACCGTTATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCAT 41862 ||||| || || || || || |||| ||||| || || |||||||| Sbjct 66407304 CTCCAAAGTGATGGTCTTCCCGGTCAAGGTCTTCACAAAGATCTGCAT 66407257 Score = 89.7 bits (98), Expect = 5e-13 Identities = 148/211 (70%), Gaps = 2/211 (1%) Strand=Plus/Minus Query 41653 CACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAGAGGGTGCGCTCGTCGTC 41712 ||||| ||||| || |||||| || ||||||||||| | | ||||| | || || Sbjct 66407238 CACCAAGTGCAGGGTCGACTCCTTTTGGATGTTATAGTCCGCCAAAGTGCGGCCATCCTC 66407179 Query 41713 GAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGAACGCTCTCCTTGTCCAT 41772 |||||||||||| || || |||| | ||| ||||| | ||||| | |||||||| | | Sbjct 66407178 GAGCTGCTTGCCAGCAAAAATCAACCTCTGCTGGTCTGGGGGAATACCCTCCTTGT-CTT 66407120 Query 41773 GATTTTTTGCTTCAACGACGAC-ACAGTGTCGCTCGACTCCACCTCCACCGTTATCGTTT 41831 | | || || | || | | | |||||| ||| ||||||| || || |||| Sbjct 66407119 GGATCTTGGCCTTGACATTGTCAATGGTGTCGGAGCTCTCAACCTCCAGGGTGATGGTTT 66407060 Query 41832 TACCCGTCAGCGTCTTTACGAAAATCTGCAT 41862 | || || || ||||| || || || ||||| Sbjct 66407059 TCCCGGTAAGGGTCTTCACAAAGATTTGCAT 66407029 >seq11 Length=56302525 Score = 105 bits (116), Expect = 6e-18 Identities = 157/219 (72%), Gaps = 4/219 (2%) Strand=Plus/Minus Query 41647 ACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAGAGGGTGCGCTC 41706 ||| ||||||||||| || || ||||||||| ||||| ||||| | || || | | | Sbjct 497460 ACGCAACACCAGATGGAGAGTTGACTCCTTCTGGATGTTGTAGTCTGCAAGAGTCCTCCC 497401 Query 41707 GTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGAACGCTCTCCTT 41766 ||| || || || || || || || |||| ||||||||||| | ||||| | |||||| Sbjct 497400 GTCCTCAAGTTGTTTACCAGCAAAGATCAAACGCTGTTGGTCTGGGGGAATACCCTCCTT 497341 Query 41767 GTCCATGATTTTTTGCTTCAACGACGACACAGTGTCGCTCGA--CTCCACCTCCACCGTT 41824 || | ||| | ||||||| || | || | || || | ||| ||||||| || Sbjct 497340 GT-CTTGAATCTTTGCTTTCACATTGTCA-ATGGTATCTGAACTCTCAACCTCCAATGTA 497283 Query 41825 ATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCATG 41863 || || || || |||| ||||| || ||||| |||||| Sbjct 497282 ATTGTCTTCCCAGTCAAAGTCTTGACAAAAATTTGCATG 497244 Score = 100 bits (110), Expect = 3e-16 Identities = 155/218 (71%), Gaps = 4/218 (2%) Strand=Plus/Minus Query 41647 ACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAGAGGGTGCGCTC 41706 ||| ||||||||||| || || ||||||||| ||||| ||||| | || || | | | Sbjct 497688 ACGCAACACCAGATGGAGAGTTGACTCCTTCTGGATGTTGTAGTCTGCAAGAGTCCTCCC 497629 Query 41707 GTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGAACGCTCTCCTT 41766 || || || || || || || || |||| ||||||||||| | ||||| | |||||| Sbjct 497628 ATCCTCAAGTTGTTTACCAGCAAAGATCAAACGCTGTTGGTCTGGGGGAATACCCTCCTT 497569 Query 41767 GTCCATGATTTTTTGCTTCAACGACGACACAGTGTCGCTCGA--CTCCACCTCCACCGTT 41824 || | ||| | ||||||| || | || | || || | ||| ||||||| || Sbjct 497568 GT-CTTGAATCTTTGCTTTCACATTGTCA-ATGGTATCTGAACTCTCAACCTCCAATGTG 497511 Query 41825 ATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCAT 41862 || || || || |||| ||||| || || |||||||| Sbjct 497510 ATTGTCTTCCCAGTCAAAGTCTTCACAAAGATCTGCAT 497473 Score = 95.1 bits (104), Expect = 1e-14 Identities = 164/232 (71%), Gaps = 10/232 (4%) Strand=Plus/Minus Query 41636 CCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAG 41695 ||||| || || | | || ||||| || || ||| ||||| ||||||||||| | Sbjct 497927 CCGCCACGGAGCCTCAGGACAAGATGAAGAGTAGACTCTTTCTGGATGTTATAGTCTGCA 497868 Query 41696 AGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTC-CGCGGG 41754 |||||||| | || || |||||||| || || || || || | |||||| || | ||| Sbjct 497867 AGGGTGCGGCCATCCTCAAGCTGCTTACCAGCAAAGATGAGCCTCTGTTGATCTGGTGGG 497808 Query 41755 AACGCTCTCCTTGTCCATGATTTTTTGCTTCAACGACGAC-ACAGTGTC---GCTCGACT 41810 | | || ||||||||| || | ||||||| || | | | ||| || ||| || Sbjct 497807 ATCCCT-TCCTTGTCC-TGTATCTTTGCTTTCACATTGTCAATAGTATCAGAGCT---CT 497753 Query 41811 CCACCTCCACCGTTATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCAT 41862 ||||||||| || || || || || || || ||||| || || |||||||| Sbjct 497752 CCACCTCCAATGTGATTGTCTTCCCAGTAAGAGTCTTCACAAAGATCTGCAT 497701 >seq10 Length=65527505 Score = 93.3 bits (102), Expect = 4e-14 Identities = 162/232 (70%), Gaps = 8/232 (3%) Strand=Plus/Plus Query 41635 GCCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGA 41694 ||| || || ||||| | ||||| || || || ||| ||||||||||| || || | Sbjct 1072492 GCCACCACGAAGACGGAGCACCAAGTGGAGAGTTGACTCTTTCTGAATGTTGTAATCAGC 1072551 Query 41695 GAGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGG 41754 || || || |||| || |||||||| || || || ||||| | ||| ||||| | ||| Sbjct 1072552 TAGAGTACGACCGTCTTCAAGCTGCTTTCCTGCAAAGATCAGCCTCTGCTGGTCTGGGGG 1072611 Query 41755 AACGCTCTCCTTGTCCATGATTTTTTGCTTCAACGACGAC-ACAGTGTC---GCTCGACT 41810 || || ||||||||| || | || |||| ||| | | | ||||| ||| | Sbjct 1072612 AATGCCTTCCTTGTCC-TGGATCTTGGCTTTAACATTGTCAATGGTGTCTGAGCT---TT 1072667 Query 41811 CCACCTCCACCGTTATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCAT 41862 ||||||| | || || || || || || || || || || || |||||||| Sbjct 1072668 CCACCTCAAGGGTGATAGTCTTTCCAGTGAGGGTTTTAACAAATATCTGCAT 1072719 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 462285825674000