Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Solanum_20melongena_20[genbank_20GCA_5F000787875.1_202014-09-30] 33,873 sequences; 833,080,760 total letters Query= NC_001611.1 Length=185578 Score E Sequences producing significant alignments: (Bits) Value seq24612 172 7e-38 seq22878 84.2 3e-11 >seq24612 Length=73035 Score = 172 bits (190), Expect = 7e-38 Identities = 580/901 (64%), Gaps = 4/901 (0%) Strand=Plus/Plus Query 23829 GACATAACTCCCATTTTTTGGTATTCACCCACACGTTTTTCGAAAAAATTAGTTTTACCT 23888 ||||||||| ||| || || || || || | || || || |||||||| || ||| Sbjct 59101 GACATAACTGAAGCTTTCTGATACTCCCCAACTCTCTTCTCAAAGAAATTAGTCTTCCCT 59160 Query 23889 TCTAATGATATATTTTCCATGAAATCGGATGGATTGGTAACATTATAGATTCTTTTAAAT 23948 | ||| || ||||| |||| ||||||| | |||| || || | | | | Sbjct 59161 TGTAAGCTAATCAGCTCCATCCAATCAAATGGATTCTGAGCATTGTACATCTTGTCATAA 59220 Query 23949 CCCAATTCAGAAATCAATCTATCTGCGACAAACTCCATATATGTTTTCATCATTTCACAA 24008 ||||| || | |||||| || || ||||| || || ||||| |||||| || | | Sbjct 59221 CCCAAAGCATCCAACAATCTGTCAGCCACAAATTCTATGTATGTACTCATCAAATCTCCA 59280 Query 24009 TTCATTCCTATAAGTTTAACTGGAAGAGCCACAGTAAGAAATTCTTGTTCAATAGAGACC 24068 ||||| || | || | || ||||| || | ||| || ||| || || Sbjct 59281 TTCATACCCACCAGCGCACAGGGCAGAGCATCACACACAAACTCCCTTTCTATCTCCACA 59340 Query 24069 GCGTCTGTTATAATAGATCTTACTGTTTCTTCACTCGG--TGGATACAATAAATGTTTAA 24126 || |||| | || || ||| ||| || || | | | | || | ||| Sbjct 59341 GCCTCTGCAACGATTCCCCTGACTCGTTCCCCAGTCAGCTTCGTCCTCAGCAAACTGTAA 59400 Query 24127 ACATCAAACATGCGAAATCGCAGTGTAGACCCTCGTCTCTACTAATTAATTCGTTGGAAA 24186 | ||| || || ||||| ||||| | ||| |||||||| ||| || || || || | Sbjct 59401 AG--CAAGCACGCAAAATCACAGTGCAAACCTTCGTCTCTTGAAATCAACTCATTCGAGA 59458 Query 24187 ACGTGAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGACGCAAATGATCCAG 24246 | || | ||||||||||| || |||||||| | ||||||||| || || ||| | Sbjct 59459 AAGTTAATCCGGGCATTAACCCCCGCTTTTTCAACCAAAATATTGAACAGAAACTTCCGG 59518 Query 24247 AAAAGAAAATTCCTTCTACTGCCGCAAAGGCAATAAGTCTTTCTCCATAACCGGCGCTGT 24306 |||||||||| |||||||| ||||| || | | | ||| | | | | Sbjct 59519 AAAAGAAAATCCCTTCTACACAAGCAAAAGCCACCAAACGCTCTGCGAAGGTTTCAGAGC 59578 Query 24307 CATGTATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATTGTCTCTATAG 24366 ||| ||||| | ||||| | |||||||||| |||||||| || ||||| || | Sbjct 59579 CATCGATCCAACGAAGGGCCCACTTCGCCTTCTTTTCAACACAAGGGATAGTCTCGATTG 59638 Query 24367 CATTAAAGAGATAGtttttttCATTACTATCTTTAACATATGTATCAATCAAAAGACTAT 24426 | || | | ||||| | | || || | || | || | || | ||| | Sbjct 59639 CCCGGAACAACCTACTCTTTTCGTCAGAGTCCTTGATGTACGACTCCAACAGCAAACTGT 59698 Query 24427 ACATTTCCGAATGAATGTTTTCAATGGCCATTTGAAATCCGTAGAAACATCTAGCCTCGG 24486 |||| || ||||| || || |||||||| ||||| ||||| |||||| | ||||| | Sbjct 59699 ACATCTCGGAATGGATATTCTCAATGGCGATTTGGAATCCATAGAAAGCACGCGCCTCAG 59758 Query 24487 TAATCTGTACTTCTATACAAAATCGTTCTGCTAAATTTTCATTCACTATTCCGTCACTGG 24546 || || || ||| | || | | | || | || || || || ||||| || Sbjct 59759 CAACTTGGACATCTTTCATGAACCTTCCAGCGAGGTTCTCTAAAACGATGCCGTCTGAGG 59818 Query 24547 CTGCAAAAAACGCCAATACATGTTTTATAAAATATTTTTCGTCTGGTGTTAGTTTATTCC 24606 | ||||||||||| | ||||| | || |||| |||| | | |||||| || | || Sbjct 59819 CAGCAAAAAACGCAAGCACATGAGTGATGAAATGCCTTTCACCGGATGTTAGGTTTTCCC 59878 Query 24607 AATCATTGATATCTTTAGATATATCCACTTCTTCCACTGTCCAAAATGATGCCTCTGCCT 24666 ||| | |||| ||||| ||| |||||||| | ||||| || |||||| || | Sbjct 59879 AATGACGAGTATCGGCAGATAGATCGACTTCTTCTGCCGTCCAGAAAGATGCCATAGCTT 59938 Query 24667 TTTTATACATATTCCAGATGTCATGATATTGAATTGGAAAAATAACAAATCTATTTGGAT 24726 | || ||||| | ||| || | | || |||||||| || ||| ||||| | ||| | Sbjct 59939 TCTTGTACATTTCCCAAATTTGTGGGTACTGAATTGGGAACATACAGAATCTGTCTGGGT 59998 Query 24727 T 24727 | Sbjct 59999 T 59999 >seq22878 Length=52695 Score = 84.2 bits (92), Expect = 3e-11 Identities = 125/173 (72%), Gaps = 6/173 (3%) Strand=Plus/Minus Query 53924 TCTCTTTCGTATAGTGTATACAATCGTTCAAACTCGTCTCCCCAAACATTGTCCAATCCA 53983 |||||||| || |||||||| ||||| || || ||||| || |||||||| Sbjct 22898 TCTCTTTCATACTTTGTATACAGCTTCTCAAAATCTTCACCCCAGCAATCTGCCAATCCA 22839 Query 53984 GGACATTCATCCGGACACATCAACGACCACTCTCCGTCATCCTT--CACTCGTTTCATAA 54041 ||| ||||| ||||| | || ||||| | ||||| | ||| |||| || ||||| Sbjct 22838 GGAGCTTCATTTGGACAAAATAAAGACCATTGTCCGT--TGCTTTGGACTCTTTCCATAA 22781 Query 54042 AGAGATCAGGAATCCAAAGAGCTATA-AATAGATCTCTGGTTCTATGTTCCTC 54093 | |||||||| | ||||||||| ||| || ||||||| || | ||| || || Sbjct 22780 AAAGATCAGGCACCCAAAGAGC-ATAGAAAAGATCTCGGGCCCGATGCTCTTC 22729 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 593470210853040