Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Solanum_20melongena_20[genbank_20GCA_5F000787875.1_202014-09-30]
33,873 sequences; 833,080,760 total letters
Query= NC_001623.1
Length=133894
Score E
Sequences producing significant alignments: (Bits) Value
seq24416 96.9 3e-15
seq24483 84.2 2e-11
seq26232 82.4 7e-11
>seq24416
Length=70076
Score = 96.9 bits (106), Expect = 3e-15
Identities = 150/213 (70%), Gaps = 1/213 (0%)
Strand=Plus/Plus
Query 28962 ATGCAAATATTCATCAAAACATTGACGGGCAAAACCATTACCGCCGAAACGGAACCCGCA 29021
|||||||| || | || || ||||| ||||| || |||||| ||| |||| |
Sbjct 31587 ATGCAAATCTTTGTGAAGACCTTGACTGGCAAGACTATTACCCTTGAAGTGGAAAGTTCT 31646
Query 29022 -GAGACGGTGGCCGATCTTAAGCAAAAAATTGCCGATAAAGAAGGTGTGCCCGTAGATCA 29080
|| || | | | || ||||| || ||| || ||||||||| | || ||| ||
Sbjct 31647 CGACACCATTGACAATGTTAAGGCCAAGATTCAGGACAAAGAAGGTATCCCACCAGACCA 31706
Query 29081 ACAAAGACTTATCTTTGCGGGCAAACAACTGGAAGATTCCAAAACTATGGCCGATTACAA 29140
||||| | || ||||| || || || |||||||| | ||| |||| ||||||||
Sbjct 31707 GCAAAGGTTGATTTTTGCTGGTAAGCAGTTGGAAGATGGAAGAACACTGGCTGATTACAA 31766
Query 29141 TATTCAGAAGGAATCTACTCTTCACATGGTGTT 29173
||||||||||||||| || ||||| | |||||
Sbjct 31767 TATTCAGAAGGAATCGACCCTTCATCTTGTGTT 31799
Score = 87.8 bits (96), Expect = 2e-12
Identities = 77/96 (80%), Gaps = 0/96 (0%)
Strand=Plus/Plus
Query 29075 AGATCAACAAAGACTTATCTTTGCGGGCAAACAACTGGAAGATTCCAAAACTATGGCCGA 29134
||||||||||||||| || ||||| || || || |||||||| | ||| |||| ||
Sbjct 35780 AGATCAACAAAGACTGATTTTTGCTGGTAAGCAGTTGGAAGATGGAAGGACTCTGGCTGA 35839
Query 29135 TTACAATATTCAGAAGGAATCTACTCTTCACATGGT 29170
|||||| || ||||||||||| || |||||| ||||
Sbjct 35840 TTACAACATCCAGAAGGAATCAACCCTTCACTTGGT 35875
Score = 84.2 bits (92), Expect = 2e-11
Identities = 88/116 (76%), Gaps = 0/116 (0%)
Strand=Plus/Plus
Query 29055 GATAAAGAAGGTGTGCCCGTAGATCAACAAAGACTTATCTTTGCGGGCAAACAACTGGAA 29114
||||| ||||| | || ||| || ||||| | |||||||| ||||| || || |||
Sbjct 35304 GATAAGGAAGGCATTCCTCCAGACCAGCAAAGGTTGATCTTTGCCGGCAAGCAGCTTGAA 35363
Query 29115 GATTCCAAAACTATGGCCGATTACAATATTCAGAAGGAATCTACTCTTCACATGGT 29170
|| ||| |||| |||||||| |||||||||||||| ||||||||| ||||
Sbjct 35364 GACGGTCGTACTCTGGCTGATTACAACATTCAGAAGGAATCCACTCTTCACTTGGT 35419
>seq24483
Length=75877
Score = 84.2 bits (92), Expect = 2e-11
Identities = 90/118 (76%), Gaps = 2/118 (2%)
Strand=Plus/Minus
Query 29050 TTGCC--GATAAAGAAGGTGTGCCCGTAGATCAACAAAGACTTATCTTTGCGGGCAAACA 29107
||||| ||||||||||| | || ||||| || ||||| || ||||| || |||||
Sbjct 24071 TTGCCAGGATAAAGAAGGCATACCTCCTGATCAGCAGAGACTGATATTTGCTGGGAAACA 24012
Query 29108 ACTGGAAGATTCCAAAACTATGGCCGATTACAATATTCAGAAGGAATCTACTCTTCAC 29165
|||||||| |||| |||| |||||||| |||||||| ||||| || ||||||
Sbjct 24011 GTTGGAAGATGGTCGAACTTTGGCTGATTACAACATTCAGAAAGAATCAACCCTTCAC 23954
>seq26232
Length=132409
Score = 82.4 bits (90), Expect = 7e-11
Identities = 81/105 (77%), Gaps = 0/105 (0%)
Strand=Plus/Minus
Query 107782 TAAACCATGCGGTTCTTTTAGTGGGTTATGGTGTTGAAAACAACATTCCATATTGGACCT 107841
|||||||||| |||||| |||||||| ||||||||||| ||||||| || ||| |
Sbjct 128215 TAAACCATGCTGTTCTTGCTGTGGGTTACGGTGTTGAAAATGACATTCCCTACTGGCTCA 128156
Query 107842 TTAAAAACACTTGGGGCACGGATTGGGGAGAGGACGGATTTTTCA 107886
| || ||| | ||||| | |||||||| || | |||| |||||
Sbjct 128155 TAAAGAACTCATGGGGAGCAGATTGGGGTGATCATGGATATTTCA 128111
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 428159171253815
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |