Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Solanum_20melongena_20[genbank_20GCA_5F000787875.1_202014-09-30] 33,873 sequences; 833,080,760 total letters Query= NC_002331.1 Length=178733 Score E Sequences producing significant alignments: (Bits) Value seq24416 109 6e-19 seq24549 105 8e-18 seq18302 105 8e-18 seq23505 104 3e-17 seq26813 102 9e-17 seq23168 86.0 7e-12 >seq24416 Length=70076 Score = 109 bits (120), Expect = 6e-19 Identities = 165/231 (71%), Gaps = 8/231 (3%) Strand=Plus/Minus Query 42957 CCTCCTCTTAAACGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCC 43016 ||||| || | | |||||| | ||| | || || || ||||||||||| ||||| Sbjct 35665 CCTCCCCTGAGCCTCAACACAAGATGAAGAGTCGATTCTTTCTGAATATTGTAGTCAGCG 35606 Query 43017 AGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCCGGC 43076 ||||||| | || || | |||||||||||| || || |||| |||||||| | || Sbjct 35605 AGAGTCCTTCCATCTTCCAACTGCTTACCAGCAAAAATCAGTCTTTGCTGGTCTGGGGGG 35546 Query 43077 ACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGTCG-CCACCGTGTC---GCTCGATTC 43132 | || |||||||||| ||| | || | || ||| | | | ||||| ||| ||| Sbjct 35545 ATGCCCTCCTTGTCC-TGAATCTTGGCTTTCACGTTGTCAATGGTGTCAGAGCT---TTC 35490 Query 43133 CACATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCAT 43183 ||| || | ||||||||||| || || || || || |||||||| ||||| Sbjct 35489 CACCTCAAGAGTGATGGTTTTTCCTGTGAGGGTTTTCACAAAGATCTGCAT 35439 Score = 100 bits (110), Expect = 3e-16 Identities = 142/196 (72%), Gaps = 8/196 (4%) Strand=Plus/Minus Query 42992 CTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAA 43051 |||||| || || ||||||||||| || ||||| | || || |||||||| ||||| || Sbjct 35174 CTCCTTCTGGATGTTGTAATCAGCAAGGGTCCGACCATCTTCGAGCTGCTTCCCAGCAAA 35115 Query 43052 TATGAGTCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGT 43111 || || | ||||||||| | || | || |||||||||| ||| || |||| ||| Sbjct 35114 GATCAGCCTCTGCTGGTCTGGAGGAATGCCCTCCTTGTCCTGGATCTTGGCCTTGA-CGT 35056 Query 43112 CG-CCACCGTGTC---GCTCGATTCCACATCGACCGTGATGGTTTTGCCCGTTAGCGTCT 43167 | | | ||||| ||| |||||| |||| |||||||| || || || || || | Sbjct 35055 TGTCAATGGTGTCAGAGCT---TTCCACCTCGAGGGTGATGGTCTTTCCGGTGAGGGTTT 34999 Query 43168 TTACAAAGATTTGCAT 43183 | || || || ||||| Sbjct 34998 TCACGAAAATCTGCAT 34983 Score = 93.3 bits (102), Expect = 5e-14 Identities = 140/195 (72%), Gaps = 8/195 (4%) Strand=Plus/Minus Query 42993 TCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAAT 43052 ||||| || || ||||||||||||||||||| | || || | |||||||||||| || Sbjct 35857 TCCTTCTGGATGTTGTAATCAGCCAGAGTCCTTCCATCTTCCAACTGCTTACCAGCAAAA 35798 Query 43053 ATGAGTCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGTC 43112 || |||| || || || | || | || |||||||||| ||| | || | | ||| Sbjct 35797 ATCAGTCTTTGTTGATCTGGGGGAATGCCCTCCTTGTCC-TGAATCTTGGCCTTCACGTT 35739 Query 43113 G-CCACCGTGTC---GCTCGATTCCACATCGACCGTGATGGTTTTGCCCGTTAGCGTCTT 43168 | | | ||||| ||| |||||| || | |||||||| ||||| || || ||||| Sbjct 35738 GTCGATGGTGTCAGAGCT---TTCCACCTCCAAAGTGATGGTCTTGCCAGTAAGAGTCTT 35682 Query 43169 TACAAAGATTTGCAT 43183 || || || ||||| Sbjct 35681 CACGAAAATCTGCAT 35667 >seq24549 Length=72154 Score = 105 bits (116), Expect = 8e-18 Identities = 160/228 (70%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 42956 TCCTCCTCTTAAACGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGC 43015 ||||||||| | || | ||||||||| | |||| ||| || || || ||||||||||| Sbjct 58507 TCCTCCTCTCAGTCGGAGCACCAAATGGAGTGTGGACTCTTTCTGGATGTTGTAATCAGC 58448 Query 43016 CAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCCGG 43075 ||||||| | | || || |||||||| ||||| || || | ||||||||||| | || Sbjct 58447 AAGAGTCCTCCCATCCTCAAGCTGCTTGCCAGCAAAAATTAAACGCTGCTGGTCTGGTGG 58388 Query 43076 CACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGTCGCCACCGTGTCGCTCGATTCCAC 43135 | | || ||||| ||| ||| ||| | | | | ||||| ||| || Sbjct 58387 AATCCCTTCTTTGTCTTGGATCTTTGCTTTCACATTATCAATGGTGTCTGAACTTTCTAC 58328 Query 43136 ATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCAT 43183 || | ||||| || || || || || ||||| |||||||| ||||| Sbjct 58327 CTCCAGGGTGATAGTCTTTCCAGTCAGTGTCTTAACAAAGATCTGCAT 58280 >seq18302 Length=24432 Score = 105 bits (116), Expect = 8e-18 Identities = 165/230 (72%), Gaps = 6/230 (3%) Strand=Plus/Plus Query 42957 CCTCCTCTTAAACGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCC 43016 ||||| || ||||||||||||||||| | ||| |||||| || || || || || || Sbjct 6711 CCTCCCCTCAAACGCAACACCAAATGGAGAGTGGACTCCTTCTGGATGTTATAGTCTGCA 6770 Query 43017 AGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCCGGC 43076 ||||||| | | || || || || || ||||| || || | ||||||||||| | || Sbjct 6771 AGAGTCCTCCCATCCTCAAGTTGTTTTCCAGCAAAGATCAAACGCTGCTGGTCTGGGGGA 6830 Query 43077 ACGCTCTCCTTGTCCATGATTTTTTG-TTTGAGCGTCGCCACCGTGTCGCTCGA--TTCC 43133 | | |||||||| | ||| | |||| ||||| ||| | || | || || | ||| Sbjct 6831 ATACCCTCCTTGT-CTTGAATCTTTGCTTTGA-CGTTGTCAATG-GTATCTGAACTTTCA 6887 Query 43134 ACATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCAT 43183 || || | || || || || || || | |||||| ||||| |||||||| Sbjct 6888 ACCTCCAATGTAATTGTCTTACCAGTCAACGTCTTGACAAAAATTTGCAT 6937 Score = 98.7 bits (108), Expect = 1e-15 Identities = 160/228 (70%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 42957 CCTCCTCTTAAACGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCC 43016 ||||| || | ||||||||||||||| | ||| |||||| || || || || || || Sbjct 6483 CCTCCCCTCAGACGCAACACCAAATGGAGAGTGGACTCCTTCTGGATGTTATAGTCTGCA 6542 Query 43017 AGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCCGGC 43076 || |||| | || || || || |||||||| || || | ||||||||||| | || Sbjct 6543 AGTGTCCTGCCATCCTCAAGTTGTTTACCAGCAAAGATCAAACGCTGCTGGTCTGGGGGA 6602 Query 43077 ACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGTCG-CCACCGTGTCGCTCGATTCCAC 43135 | | |||||||| | ||| | |||| || | | | | | | || || || ||||| Sbjct 6603 ATACCCTCCTTGT-CTTGAATCTTTGCTTTAACATTGTCAATGGTATCTGAGGACTCCAC 6661 Query 43136 ATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCAT 43183 || | ||||| || || || || || ||||| || ||||| ||||| Sbjct 6662 CTCCAATGTGATAGTCTTCCCAGTCAGGGTCTTCACGAAGATCTGCAT 6709 >seq23505 Length=59109 Score = 104 bits (114), Expect = 3e-17 Identities = 163/232 (70%), Gaps = 6/232 (3%) Strand=Plus/Plus Query 42956 TCCTCCTCTTAAACGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGC 43015 |||||| || | | || |||||| || | || ||||||||| || |||||||| || Sbjct 2441 TCCTCCCCTCAGCCTCAGCACCAAGTGAAGGGTCGACTCCTTTTGGATGTTGTAATCCGC 2500 Query 43016 CAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCCGG 43075 ||| || || | || || |||||||||||||| || || | | ||||||||| | ||| Sbjct 2501 CAGGGTGCGGCCATCCTCAAGCTGCTTACCAGCAAAGATCAACCTCTGCTGGTCTGGCGG 2560 Query 43076 CACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGTCGCCACCGTGTC---GCTCGATTC 43132 | | |||||||||| ||| || |||| | | | ||||| |||| || Sbjct 2561 GATTCCCTCCTTGTCCTGGATCTTGGCCTTGACATTGTCGATGGTGTCGGAGCTC---TC 2617 Query 43133 CACATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCATT 43184 || || | |||||||| || || || || ||||| ||||| || |||||| Sbjct 2618 AACCTCCAAGGTGATGGTCTTCCCGGTGAGGGTCTTGACAAAAATCTGCATT 2669 Score = 98.7 bits (108), Expect = 1e-15 Identities = 161/231 (70%), Gaps = 6/231 (3%) Strand=Plus/Plus Query 42956 TCCTCCTCTTAAACGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGC 43015 |||||| || | | || |||||| || | || ||||||||| || |||||||| || Sbjct 2669 TCCTCCCCTCAGCCTCAGCACCAAGTGAAGGGTCGACTCCTTTTGGATGTTGTAATCCGC 2728 Query 43016 CAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCCGG 43075 ||| || || | || || |||||||||||||| || || | | ||||||||| | || Sbjct 2729 CAGGGTGCGGCCATCCTCAAGCTGCTTACCAGCAAAGATCAACCTCTGCTGGTCTGGTGG 2788 Query 43076 CACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGTCGCCACCGTGTC---GCTCGATTC 43132 | | |||||||||| ||| || |||| | | | ||||| |||| || Sbjct 2789 GATTCCCTCCTTGTCCTGGATCTTGGCCTTGACATTGTCGATGGTGTCGGAGCTC---TC 2845 Query 43133 CACATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCAT 43183 || || | || ||||| || || || | ||||| |||||||||||||| Sbjct 2846 AACCTCCAGGGTAATGGTCTTCCCGGTGAAGGTCTTCACAAAGATTTGCAT 2896 Score = 95.1 bits (104), Expect = 1e-14 Identities = 136/192 (71%), Gaps = 0/192 (0%) Strand=Plus/Plus Query 42992 CTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAA 43051 |||||| || || ||||||||||| || ||||| | || || | |||||||||||| || Sbjct 2933 CTCCTTCTGGATGTTGTAATCAGCAAGGGTCCGGCCATCCTCAAACTGCTTACCAGCAAA 2992 Query 43052 TATGAGTCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGT 43111 || | | ||||||||| | || | | |||||||||| ||| || || | | Sbjct 2993 GATCAACCTCTGCTGGTCCGGGGGAATACCCTCCTTGTCCTGGATCTTAGCCTTAACATT 3052 Query 43112 CGCCACCGTGTCGCTCGATTCCACATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTAC 43171 | | |||||| |||||| || | |||||||| ||||| || || ||||| || Sbjct 3053 GTCAATGGTGTCGGAGCTTTCCACCTCAAGGGTGATGGTCTTGCCGGTGAGTGTCTTGAC 3112 Query 43172 AAAGATTTGCAT 43183 ||||| ||||| Sbjct 3113 GAAGATCTGCAT 3124 Score = 93.3 bits (102), Expect = 5e-14 Identities = 141/197 (72%), Gaps = 8/197 (4%) Strand=Plus/Plus Query 42992 CTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAA 43051 |||||| || |||||||| || || || || || | || || |||||||||||||| || Sbjct 2249 CTCCTTCTGGATATTGTAGTCCGCAAGGGTGCGGCCATCCTCGAGCTGCTTACCAGCAAA 2308 Query 43052 TATGAGTCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATTTTTTG-TTTGAGCG 43110 || | | ||||||||| | || | | |||||||||| ||| | || | ||| | Sbjct 2309 GATCAACCTCTGCTGGTCTGGGGGAATTCCCTCCTTGTCC-TGAATCTTAGCTTTCACAT 2367 Query 43111 TCGCCACCGTGTC---GCTCGATTCCACATCGACCGTGATGGTTTTGCCCGTTAGCGTCT 43167 | | | |||||| ||| ||||| || | |||||||| || || || || |||| Sbjct 2368 TGTCGATCGTGTCAGAACTC---TCCACCTCCAAGGTGATGGTCTTCCCTGTAAGGGTCT 2424 Query 43168 TTACAAAGATTTGCATT 43184 | |||||||| |||||| Sbjct 2425 TAACAAAGATCTGCATT 2441 Score = 84.2 bits (92), Expect = 2e-11 Identities = 153/220 (70%), Gaps = 8/220 (4%) Strand=Plus/Plus Query 42968 ACGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTC 43027 ||| | ||||||||| | || |||||| || || ||||||||||| ||||| || | Sbjct 3137 ACGAAGCACCAAATGGAGGGTAGACTCCTTCTGGATGTTGTAATCAGCTAGAGTACGTCC 3196 Query 43028 GTCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCCGGCACGCTCTCCTT 43087 ||| || |||||||| || ||||| || || | ||||| || | || | | ||||| Sbjct 3197 GTCCTCAAGCTGCTTTCCGGCGAAAATAAGCCTTTGCTGATCCGGGGGAATCCCTTCCTT 3256 Query 43088 GTCCATGATTTTTTGTTTGAGCGTCG-CCACCGTGTC---GCTCGATTCCACATCGACCG 43143 ||| || | || | | | ||| | | | || || |||| ||||| || | | Sbjct 3257 ATCC-TGGATCTTAGCCTTAACGTTGTCAATTGTATCGGAGCTC---TCCACCTCTAGGG 3312 Query 43144 TGATGGTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCAT 43183 ||||||| || || || || || ||||| ||||| ||||| Sbjct 3313 TGATGGTCTTTCCGGTGAGTGTTTTTACGAAGATCTGCAT 3352 >seq26813 Length=197329 Score = 102 bits (112), Expect = 9e-17 Identities = 140/196 (71%), Gaps = 0/196 (0%) Strand=Plus/Plus Query 42992 CTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAA 43051 |||||| || || ||||| ||||| || || || | || || ||||||||||| ||||| Sbjct 97341 CTCCTTCTGGATGTTGTAGTCAGCTAGTGTTCGTCCATCCTCGAGCTGCTTACCTGCGAA 97400 Query 43052 TATGAGTCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGT 43111 || | | ||||||||| | || | || ||||||||| ||| || |||| | Sbjct 97401 AATCAACCTCTGCTGGTCTGGTGGAATGCCTTCCTTGTCCTGGATCTTAGCCTTGACATT 97460 Query 43112 CGCCACCGTGTCGCTCGATTCCACATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTAC 43171 | | ||||| || || || || | || || || ||||||||||| ||||| || Sbjct 97461 GTCAATGGTGTCAGATGACTCTACCTCTAAGGTAATAGTCTTGCCCGTTAGGGTCTTCAC 97520 Query 43172 AAAGATTTGCATTTTT 43187 |||||| ||||||||| Sbjct 97521 AAAGATCTGCATTTTT 97536 Score = 91.5 bits (100), Expect = 2e-13 Identities = 140/197 (71%), Gaps = 2/197 (1%) Strand=Plus/Minus Query 42992 CTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAA 43051 |||||| || || ||||| ||||| || || || | || || ||||||||||| ||||| Sbjct 149190 CTCCTTCTGGATGTTGTAGTCAGCTAGTGTTCGTCCATCCTCAAGCTGCTTACCTGCGAA 149131 Query 43052 TATGAGTCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGT 43111 || | ||||||||||| | || | || ||||||||| ||| | || | | | | | Sbjct 149130 AATCAACCGCTGCTGGTCTGGTGGAATGCCTTCCTTGTCC-TGAATCTTAGCCTTAACAT 149072 Query 43112 CG-CCACCGTGTCGCTCGATTCCACATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTA 43170 | | | ||||| || || || || | || || || || ||||| || ||||| | Sbjct 149071 TGTCGATGGTGTCTGATGACTCTACCTCCAAGGTAATAGTCTTACCCGTCAGGGTCTTCA 149012 Query 43171 CAAAGATTTGCATTTTT 43187 ||||||| ||||| ||| Sbjct 149011 CAAAGATCTGCATGTTT 148995 >seq23168 Length=55519 Score = 86.0 bits (94), Expect = 7e-12 Identities = 136/195 (70%), Gaps = 0/195 (0%) Strand=Plus/Plus Query 42992 CTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAA 43051 |||||| || || ||||| || || ||||| || | || || |||||||| || ||||| Sbjct 53752 CTCCTTCTGGATGTTGTAGTCGGCAAGAGTGCGACCATCCTCAAGCTGCTTTCCGGCGAA 53811 Query 43052 TATGAGTCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGT 43111 || | |||||||||||| | || | | |||||||| ||| || ||||| | Sbjct 53812 AATCAATCGCTGCTGGTCTGGGGGAATCCCTTCCTTGTCTTGGATCTTGGCTTTGACATT 53871 Query 43112 CGCCACCGTGTCGCTCGATTCCACATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTAC 43171 | | ||||| || || || || | ||||| || || |||||||| || || || Sbjct 53872 GTCGATGGTGTCAGAAGACTCAACCTCTAGGGTGATCGTCTTCCCCGTTAGGGTTTTCAC 53931 Query 43172 AAAGATTTGCATTTT 43186 ||||| ||||| || Sbjct 53932 GAAGATCTGCATCTT 53946 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 571575485280440