Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Solanum_20melongena_20[genbank_20GCA_5F000787875.1_202014-09-30] 33,873 sequences; 833,080,760 total letters Query= NC_002520.1 Length=232392 Score E Sequences producing significant alignments: (Bits) Value seq24549 107 3e-18 seq18302 93.3 6e-14 seq22151 91.5 2e-13 >seq24549 Length=72154 Score = 107 bits (118), Expect = 3e-18 Identities = 79/92 (86%), Gaps = 0/92 (0%) Strand=Plus/Minus Query 146096 ATATTATAATCTGAAAGAGTTCTGCTATCATCTAATTGTTTTCCAGCAAAAATCAATCTT 146155 || ||||| |||| ||||||||| | ||| |||||||| ||||||||||| ||||| ||| Sbjct 57777 ATGTTATAGTCTGCAAGAGTTCTACCATCCTCTAATTGCTTTCCAGCAAAGATCAACCTT 57718 Query 146156 TGCTGATCCGGAGGAATTCCTTCTTTATCTTG 146187 |||||||| || ||||||||||| || ||||| Sbjct 57717 TGCTGATCAGGGGGAATTCCTTCCTTGTCTTG 57686 Score = 98.7 bits (108), Expect = 1e-15 Identities = 77/92 (84%), Gaps = 0/92 (0%) Strand=Plus/Minus Query 146096 ATATTATAATCTGAAAGAGTTCTGCTATCATCTAATTGTTTTCCAGCAAAAATCAATCTT 146155 || ||||| || | ||||||||| | ||| || || |||||||| || || |||||||| Sbjct 58005 ATGTTATAGTCAGCAAGAGTTCTTCCATCCTCCAACTGTTTTCCGGCGAAGATCAATCTC 57946 Query 146156 TGCTGATCCGGAGGAATTCCTTCTTTATCTTG 146187 |||||||| |||||||||||||| |||||||| Sbjct 57945 TGCTGATCTGGAGGAATTCCTTCCTTATCTTG 57914 Score = 89.7 bits (98), Expect = 8e-13 Identities = 102/137 (74%), Gaps = 0/137 (0%) Strand=Plus/Minus Query 146051 CCACCTCTAAGTCTTAATACCAAATGTAAAGTAGATTCTTTAGATATATTATAATCTGAA 146110 ||||| || || | | |||| ||| | ||| |||||||| ||||| || || | | Sbjct 58278 CCACCCCTTAGGCGCAGCACCAGATGAAGAGTGGATTCTTTCTGAATATTGTAGTCAGCA 58219 Query 146111 AGAGTTCTGCTATCATCTAATTGTTTTCCAGCAAAAATCAATCTTTGCTGATCCGGAGGA 146170 || || | | ||| || | ||| ||||||||||||||||| || |||||||| |||||| Sbjct 58218 AGGGTACGACCATCCTCAAGTTGCTTTCCAGCAAAAATCAACCTCTGCTGATCTGGAGGA 58159 Query 146171 ATTCCTTCTTTATCTTG 146187 || ||||| || || || Sbjct 58158 ATGCCTTCCTTGTCCTG 58142 Score = 87.8 bits (96), Expect = 3e-12 Identities = 152/229 (66%), Gaps = 0/229 (0%) Strand=Plus/Minus Query 146049 TTCCACCTCTAAGTCTTAATACCAAATGTAAAGTAGATTCTTTAGATATATTATAATCTG 146108 |||| ||||| |||| | |||||||| | || || ||||| || || ||||| | Sbjct 58508 TTCCTCCTCTCAGTCGGAGCACCAAATGGAGTGTGGACTCTTTCTGGATGTTGTAATCAG 58449 Query 146109 AAAGAGTTCTGCTATCATCTAATTGTTTTCCAGCAAAAATCAATCTTTGCTGATCCGGAG 146168 |||||| || | ||| || | || || ||||||||||| || | ||||| || || | Sbjct 58448 CAAGAGTCCTCCCATCCTCAAGCTGCTTGCCAGCAAAAATTAAACGCTGCTGGTCTGGTG 58389 Query 146169 GAATTCCTTCTTTATCTTGNNNNNNNNNNNNNNNNNNNNNNNNAGTATCTGAACTTTCTA 146228 |||| |||||||| ||||| || ||||||||||||| Sbjct 58388 GAATCCCTTCTTTGTCTTGGATCTTTGCTTTCACATTATCAATGGTGTCTGAACTTTCTA 58329 Query 146229 CTTCTAGTGTGATTGTTTTACCTGTTAATGTTTTAATGAATATTTGCAT 146277 | || || ||||| || || || || | ||| |||| || || ||||| Sbjct 58328 CCTCCAGGGTGATAGTCTTTCCAGTCAGTGTCTTAACAAAGATCTGCAT 58280 >seq18302 Length=24432 Score = 93.3 bits (102), Expect = 6e-14 Identities = 143/212 (67%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 146066 AATACCAAATGTAAAGTAGATTCTTTAGATATATTATAATCTGAAAGAGTTCTGCTATCA 146125 || |||||||| | ||| || || || || ||||| |||| |||||| || | ||| Sbjct 6726 AACACCAAATGGAGAGTGGACTCCTTCTGGATGTTATAGTCTGCAAGAGTCCTCCCATCC 6785 Query 146126 TCTAATTGTTTTCCAGCAAAAATCAATCTTTGCTGATCCGGAGGAATTCCTTCTTTATCT 146185 || | ||||||||||||||| ||||| | ||||| || || ||||| || || || ||| Sbjct 6786 TCAAGTTGTTTTCCAGCAAAGATCAAACGCTGCTGGTCTGGGGGAATACCCTCCTTGTCT 6845 Query 146186 TGNNNNNNNNNNNNNNNNNNNNNNNNAGTATCTGAACTTTCTACTTCTAGTGTGATTGTT 146245 || |||||||||||||| || || | ||| ||||| Sbjct 6846 TGAATCTTTGCTTTGACGTTGTCAATGGTATCTGAACTTTCAACCTCCAATGTAATTGTC 6905 Query 146246 TTACCTGTTAATGTTTTAATGAATATTTGCAT 146277 ||||| || || || || | || |||||||| Sbjct 6906 TTACCAGTCAACGTCTTGACAAAAATTTGCAT 6937 >seq22151 Length=46047 Score = 91.5 bits (100), Expect = 2e-13 Identities = 104/140 (74%), Gaps = 0/140 (0%) Strand=Plus/Minus Query 146048 GTTCCACCTCTAAGTCTTAATACCAAATGTAAAGTAGATTCTTTAGATATATTATAATCT 146107 ||||| || || || || || |||| || | || |||||||| || || ||||| Sbjct 13995 GTTCCTCCCCTCAGCCTCAAAACCAGGTGAAGTGTTGATTCTTTCTGGATGTTGTAATCA 13936 Query 146108 GAAAGAGTTCTGCTATCATCTAATTGTTTTCCAGCAAAAATCAATCTTTGCTGATCCGGA 146167 | ||||||| | ||| || || ||||||||||||||||| | ||| ||||| || ||| Sbjct 13935 GCCAGAGTTCGACCATCTTCCAACTGTTTTCCAGCAAAAATTAGTCTCTGCTGGTCAGGA 13876 Query 146168 GGAATTCCTTCTTTATCTTG 146187 || || |||||||| || || Sbjct 13875 GGTATCCCTTCTTTGTCCTG 13856 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 743211581628160