Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Solanum_20melongena_20[genbank_20GCA_5F000787875.1_202014-09-30] 33,873 sequences; 833,080,760 total letters Query= NC_002642.1 Length=144575 Score E Sequences producing significant alignments: (Bits) Value seq24612 131 2e-25 >seq24612 Length=73035 Score = 131 bits (144), Expect = 2e-25 Identities = 579/899 (64%), Gaps = 31/899 (3%) Strand=Plus/Plus Query 15927 TTGACATAACTGACATTTTTTGATATTCACTAACTCTCTTTTCAAAGAAATTTGTTTTTC 15986 ||||||||||||| ||| ||||| || | ||||||||| ||||||||||| || || | Sbjct 59099 TTGACATAACTGAAGCTTTCTGATACTCCCCAACTCTCTTCTCAAAGAAATTAGTCTTCC 59158 Query 15987 CTTCTAATGAAATATTTTCCATAAAATCAAAAGGATTTTTTGAACAATAGTA---TTTAT 16043 ||| ||| ||| ||||| ||||||| ||| || ||| | || ||| || | Sbjct 59159 CTTGTAAGCTAATCAGCTCCATCCAATCAAATGGA--TTCTGAGC-ATTGTACATCTTGT 59215 Query 16044 CGCATCCCAATTCCAACAATAATCTATCCGCCACAAATTCTATATACTGT-TTCATTAAA 16102 | | ||||| | ||| ||||| || |||||||||||||| || ||| |||| ||| Sbjct 59216 CATAACCCAAAGCATCCAACAATCTGTCAGCCACAAATTCTATGTA-TGTACTCATCAAA 59274 Query 16103 TCACAGTTCATTCCTATTAATTTAACAGGG-ATTGCTTCTGTTAAAAAAtttttttCTAT 16161 || | ||||| || | | |||||| | || || | ||| | ||||||| Sbjct 59275 TCTCCATTCATACCCA-CCAGCGCACAGGGCAGAGCATCACACACAAACTCCCTTTCTAT 59333 Query 16162 AT---TAACCGCTTCAATGATTATATCTCTTAC---TACACTATTTAACGGAGGGTTTAA 16215 | | || || ||| |||| | || || | | | | | | | | | | Sbjct 59334 CTCCACAGCCTCTGCAACGATT---CCCCTGACTCGTTCCCCAGTCAGCTTCGTCCTCAG 59390 Query 16216 TAAGTGTTTAAACATTATACAAGCAAAATCACAATGCAATCCTTCGTCCCTACTTATTAA 16275 || | ||| | | || ||||||||||| ||||| |||||||| || || || Sbjct 59391 CAA-ACTGTAA--AGCAAGCACGCAAAATCACAGTGCAAACCTTCGTCTCTTGAAATCAA 59447 Query 16276 CTCGTTTGAAAATGTAAGACCTGGCATTAGTCCTCGTTTTTTAATCCAAAATAT--AGCG 16333 ||| || || || || | || ||||||| || || ||||| | ||||||||| | | Sbjct 59448 CTCATTCGAGAAAGTTAATCCGGGCATTAACCCCCGCTTTTTCAACCAAAATATTGAACA 59507 Query 16334 GCAAATGAACCAGAAAAGAATATACCTTCAACTGCGGCAAATGCAACCAATCGCTCACCG 16393 | || | || |||||||| || ||||| || ||||| || ||||| ||||| || Sbjct 59508 GAAACT--TCCGGAAAAGAAAATCCCTTCTACACAAGCAAAAGCCACCAAACGCTCTGCG 59565 Query 16394 TACGTTCTAtttttactttctatccattttttagcccaatttgctttttgtttAACACAG 16453 | ||| | | || ||||| ||||| || || || | || |||||| Sbjct 59566 AAGGTT---TCAGAGCCATCGATCCAACGAAGGGCCCACTTCGCCTTCTTTTCAACACAA 59622 Query 16454 TTCATGTTCTCTATTGCATTAAATAAATAAtttttttCTTTGCTATCTAAAATATAAGTA 16513 || |||| ||||| || || | | ||||| | || || || | Sbjct 59623 GGGATAGTCTCGATTGCCCGGAACAACCTACTCTTTTCGTCAGAGTCCTTGATGTACGAC 59682 Query 16514 TCTATTAGTAAACTATACATTTCTGAATGAATATTCTCCATTGCTATCTGAAAACCATA- 16572 || | || ||||| ||||| || ||||| |||||||| || || || || || ||||| Sbjct 59683 TCCAACAGCAAACTGTACATCTCGGAATGGATATTCTCAATGGCGATTTGGAATCCATAG 59742 Query 16573 AAAGCATCTAGCTTCGGATATTTGTACTTCAGAGTAAAACCTTTCTGCTAAGTTTTCGTT 16632 |||||| | || || | | ||| || || |||||| | || | ||| || Sbjct 59743 AAAGCA-CGCGCCTCAGCAACTTGGACATCTTTCATGAACCTTCCAGCGAGGTTCTCTAA 59801 Query 16633 AACTATTCCATCGCTAGCTGCAAAAAACGCAAGTATGTGTTTAATAAAAtttttttCGTT 16692 ||| || || || || |||||||||||||| | || | || |||| |||| Sbjct 59802 AACGATGCCGTCTGAGGCAGCAAAAAACGCAAGCACATGAGTGATGAAATGCCTTTCACC 59861 Query 16693 ATCTGAAAGTTTTAACCAGTCAGAAAAATCTTTTGATAAATCGACCTCTTCTACAGTCCA 16752 || || ||| ||| | | | ||| |||| |||||| |||||| | ||||| Sbjct 59862 GGATGTTAGGTTTTCCCAATGACGAGTATCGGCAGATAGATCGACTTCTTCTGCCGTCCA 59921 Query 16753 AAAAGAAGCAACAGCCTTTTTATACATTTTCCATATGTCTTCGTAAACAATAGGAAACA 16811 ||||| || | ||| || || ||||||| ||| || | | ||| ||| || |||| Sbjct 59922 GAAAGATGCCATAGCTTTCTTGTACATTTCCCAAATTTGTGGGTACTGAATTGGGAACA 59980 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 462316166637800