Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Solanum_20melongena_20[genbank_20GCA_5F000787875.1_202014-09-30] 33,873 sequences; 833,080,760 total letters Query= NC_003389.1 Length=146454 Score E Sequences producing significant alignments: (Bits) Value seq24612 109 5e-19 seq22878 93.3 4e-14 seq24630 84.2 2e-11 >seq24612 Length=73035 Score = 109 bits (120), Expect = 5e-19 Identities = 381/590 (65%), Gaps = 6/590 (1%) Strand=Plus/Plus Query 11627 AAACACGCAAAATCACAATGTAAACCTTCGTCTCTACTTATTAGTTCATTAGAAAATGTT 11686 || |||||||||||||| || |||||||||||||| || | ||||| || || ||| Sbjct 59404 AAGCACGCAAAATCACAGTGCAAACCTTCGTCTCTTGAAATCAACTCATTCGAGAAAGTT 59463 Query 11687 AATCCGGGCATCAATCCTCGtttttttATCCAAAATAT--AGCAGCAAATGAACCAGAAA 11744 ||||||||||| || || || ||||| | ||||||||| | ||| || | || |||| Sbjct 59464 AATCCGGGCATTAACCCCCGCTTTTTCAACCAAAATATTGAACAGAAACT--TCCGGAAA 59521 Query 11745 AGAATATTCCCTCCACAGCTGCAAATGCTACTACTCTTTCTCCATATACCTTGTTGCTAG 11804 |||| || || || ||| ||||| || || | | ||| | | | || | Sbjct 59522 AGAAAATCCCTTCTACACAAGCAAAAGCCACCAAACGCTCTGCGAAGGTTTCAGAGCCAT 59581 Query 11805 ATATCCATTTTCTGGCCCAATCAGCTTTCTTTTTTACGCATTCCATTGTTTCTATAGCGT 11864 ||||| |||||| | || ||||||| || || || || || || || Sbjct 59582 CGATCCAACGAAGGGCCCACTTCGCCTTCTTTTCAACACAAGGGATAGTCTCGATTGCCC 59641 Query 11865 TAAATAAATGCATTTTTTCTATATTATCTCTTACATATGTATCTATTAATAAACTATACA 11924 || || | ||||| | || | | || | || | | ||||| |||| Sbjct 59642 GGAACAACCTACTCTTTTCGTCAGAGTCCTTGATGTACGACTCCAACAGCAAACTGTACA 59701 Query 11925 TTTCTGAATGAATATTTTCCATAGCTATTTGAAATCCATAGAAACATCGTGCCTCTGAAC 11984 | || ||||| ||||| || || || ||||| |||||||||||| || ||||| | | Sbjct 59702 TCTCGGAATGGATATTCTCAATGGCGATTTGGAATCCATAGAAAGCACGCGCCTCAGCAA 59761 Query 11985 ACTGTACATC-CACATAAAATCTTTCCGCTAAATTCTCATTTACAATACCATCACTAGAT 12043 || ||||| ||| || ||| | || | ||||| || || || || | Sbjct 59762 CTTGGACATCTTTCAT-GAACCTTCCAGCGAGGTTCTCTAAAACGATGCCGTCTGAGGCA 59820 Query 12044 GCAAAAAATGCTAGTATATGTTTTATAAAGTATTTTTCGTCTTTAGTTAATTTATCCCAA 12103 |||||||| || || | ||| | || || | |||| | |||| || |||||| Sbjct 59821 GCAAAAAACGCAAGCACATGAGTGATGAAATGCCTTTCACCGGATGTTAGGTTTTCCCAA 59880 Query 12104 TCATCTAAATCTTTTGATAAATCTACTTCTTCAACGGTCCAAAAACTTGCCACTGATTGT 12163 | | ||| |||| ||| |||||||| | ||||| ||| ||||| | || Sbjct 59881 TGACGAGTATCGGCAGATAGATCGACTTCTTCTGCCGTCCAGAAAGATGCCATAGCTTTC 59940 Query 12164 TTATACATTTTCCAGATATCATGATACTTAATAGGGAAAATAACGAACCT 12213 || ||||||| ||| || | | |||| ||| ||||| ||| ||| || Sbjct 59941 TTGTACATTTCCCAAATTTGTGGGTACTGAATTGGGAACATACAGAATCT 59990 >seq22878 Length=52695 Score = 93.3 bits (102), Expect = 4e-14 Identities = 114/156 (73%), Gaps = 0/156 (0%) Strand=Plus/Minus Query 38396 ACATTTGAGGCAATGGAGTTCCGGCGTTAAATAATGTAGGAGATGCATGTATGAACCATT 38455 ||| ||||||| ||||||||| || ||||| | || ||||| ||||| |||||||| Sbjct 22080 ACACTTGAGGCCTTGGAGTTCCAGCATTAAAAAGAGTTGGAGAAGCATGAGTGAACCATC 22021 Query 38456 TTTCCGACAAATAATTATATGTTTCTATTACATCATCTATATCACCGCCGTGAATACCTA 38515 ||| |||| ||| ||| || | || || || |||||| | ||| || || | Sbjct 22020 TTTGAGACATCAAATGATAAGTCTTGATGGCAGATTCAATATCATCTTTGTGGATCCCAA 21961 Query 38516 GAGATACCCTCATTAGCATATGTTGTGGTCTTTCTA 38551 ||| || | ||| |||||||||||||| ||||||| Sbjct 21960 CAGAGACTCGCATCAGCATATGTTGTGGCCTTTCTA 21925 >seq24630 Length=73539 Score = 84.2 bits (92), Expect = 2e-11 Identities = 114/159 (72%), Gaps = 0/159 (0%) Strand=Plus/Minus Query 38400 TTGAGGCAATGGAGTTCCGGCGTTAAATAATGTAGGAGATGCATGTATGAACCATTTTTC 38459 |||||| |||||| || || ||||| | || ||||||||||| ||||||| || Sbjct 27531 TTGAGGTCTTGGAGTGCCAGCATTAAACAGCGTTGGAGATGCATGAGTGAACCAGCGTTG 27472 Query 38460 CGACAAATAATTATATGTTTCTATTACATCATCTATATCACCGCCGTGAATACCTAGAGA 38519 |||| ||| |||||| | || || || ||||| | ||| || || | ||| Sbjct 27471 AGACATCAAATGATATGTCTTGATGGCAGATTCAATATCCTCCTTGTGGATTCCAACAGA 27412 Query 38520 TACCCTCATTAGCATATGTTGTGGTCTTTCTATTATTTT 38558 ||| ||||| ||||| |||||||| ||||||| ||||| Sbjct 27411 TACTCTCATCAGCATGTGTTGTGGCCTTTCTACAATTTT 27373 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 468326420743120